Week 3 Flashcards

1
Q

bacterial cell envelope is anything ______

A

from the plasma membrane out

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2
Q

parts of gram + bacteria cell envelope (inner to out)

A

-periplasm (gel-like cytoplasm outside pm)
-thick peptidoglycan layer

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3
Q

parts of gram - bacteria cell envelope (inner to out)

A

-periplasm (gel-like cytoplasm outside pm)
-thin peptidoglycan layer
-periplasm (gel-like cytoplasm outside pm)
-outer membrane (only in gram -)

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4
Q

PM are mostly ______

A

phospholipids and carbohydrates with proteins imbedded within

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5
Q

functions of cytoplasmic membrane

A

1) permeability barrier: prevents leakage, transport of nutrients in and wastes out
2) protein anchor: proteins participate in transport etc.
3) energy conservation: charge differential across membrane

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6
Q

parts of PM

A

fatty acid tail chains –> glycerol –> phosphate head group –> sidechain

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7
Q

glycerol is connected to lipid tails in PM by ____ in bacteria and eurkarya but not archaea (____)

A

-ester linkage
-ether linkage

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8
Q

saturated fatty acids are ____
unsaturated fatty acids are _____

A

-straight, inflexible
-kinky, mobile

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9
Q

types of phospholipids most common in e-coli

A

-Phosphatidylethanolamine
-Phosphatidylserine

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10
Q

phospholipid + side chain
a) Phosphatidic acid
b) Phosphatidylethanolamine
c) Phosphatidylserine
d) Phosphatidylcholine
e) Phosphatidylglycerol
f) Cardiolipin

A

a) X=H
b) X=CH2CH2NH3
c) X=CH2CH2(NH3)COOH
d) X=CH2CH2N(CH3)3
e) X=CH2CH(OH)CH2OH
f) X=Phosphatidylglycerol

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11
Q

lipid acyl chains affects _____

A

membrane fluidity

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12
Q

PM with only saturated lipids is needed for _____

A

bacteria that lives in high temp

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13
Q

PM with mixed saturated/unsaturated lipids is needed for _____

A

bacteria that lives in low temp

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14
Q

____ , an activated carrier molecule, is also part of PM and consists of _____.

A

-undecaprenyl pyrophosphate
-55C in isoprene units and 2 PO4

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15
Q

integral membrane proteins are ____

A

imbedded in the membrane

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16
Q

types of integral membrane proteins

A

1) monotopic alpha helix - cross PM once
2) polytopic alpha helices - cross PM more than once
3) polytopic beta barrel - cross PM more than once

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17
Q

peripheral membrane proteins are ______

A

associated with membrane on either side but not imbedded

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18
Q

types of peripheral membrane proteins

A

1) alpha helix (part of protein associates with membrane)
2) loops associated with membrane
3) acylated (fatty acid attached imbedded in membrane)
4) ionic (charged interactions with hydrophilic head groups)

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19
Q

diffusion (def., energy requirement, permitted/not permitted to pass)

A
  • Free movement of molecules along a concentration gradient
  • Does not require energy (passive)
  • Permitted: Small hydrophobic molecules, Water, O2,CO2
  • Not permitted: Charged molecules (ions), large hydrophilic molecules (sugars, NA. proteins, etc.)
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20
Q

osmosis (def.)

A

Movement of water along a concentration gradient

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21
Q

osmosis can do what?

A

Can exert a physical force on the membrane

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22
Q

hypertonic solution (def.) + effect on cell

A

-[H2O] outside cell < [H2O] inside cell
-H2O leaves cell & cell dehydrates

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23
Q

isotonic solution (def.) + effect on cell

A

-[H2O] outside cell = [H2O] inside cell
-no net movement of water

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24
Q

isotonic solution of bacteria is not ____

A

saline like for animal cells

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25
Q

hypotonic solution (def.) + effect on cell

A

-[H2O] outside cell > [H2O] inside cell
-animal: H2O enters cell & cell burst no net movement of water
-bacteria: peptidoglycan and S-layers prevent cell from bursting

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26
Q

facilitated diffusion (def., energy requirement, permitted/not permitted to pass)

A
  • Movement of molecules along a concentration
    gradient - requires a protein carrier that is selective for its substarte (size-dependent)
  • Does not require energy (passive)
  • Ions, sugars, amino acids can pass
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27
Q

In facilitated diffusion, movement rate is determined by ____

A

the number of transporters & transporter affinity for solute & a bit of [solute]

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28
Q

in simple diffusion, movement rate is ____

A

directly proportional to [solute] - linear

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29
Q

types of transporters

A

-uniport
-symport
-antiport

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30
Q

uniport (def.)

A

protein transporter that moves one molecule across membrane, usually facilitated diffusion

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31
Q

symport (def.)

A

protein transporter that moves two molecules across membrane in same direction (can use energy from proton motive force)

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32
Q

antiport (def.)

A

protein transporter that moves two molecules across membrane in opposite direction (can use energy from proton motive force)

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33
Q

proton motive force (PMF) (def.)

A
  • Higher concentration of protons outside the cell
  • Protons want to go inside cell along concentration gradient
  • Proton movement contains energy
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34
Q

PMF can be used to transport _______

A

molecules against a concentration gradient

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35
Q

How Glucose transport work?

A
  • glucose enter cell via facilitated diffusion
  • when glucose enters cell, it is phosphorylated immediately upon entering cell
  • glucose-6-phosphate cannot enter transporter
  • glucose gradient still maintained
36
Q

active transport (def., energy requirement, permitted/not permitted to pass)

A
  • Movement of molecules against a concentration
    gradient - requires a protein carrier
  • Requires energy, usually in the form of ATP (active)
  • Transporters are selective for particular substrates
  • Movement rate is limited by the number of transporters
  • Used to pump nutrients into the cells and harmful
    substances out of the cell
37
Q

ABC (______) transporters description

A
  • ATP binding casette
  • 4 parts (4 separate proteins or 1 protein with 4 domains)
38
Q

parts of ABC transporters

A

-2 transmembrane domains
-2 nucleotide binding domain in the cytoplasm

39
Q

how ABC transporters work?

A

-substrate binds to binding protein which helps facilitate interaction with ABC transporter
-ATP bound transporter is in outward facing position + substrate binds to transporter
-ATP hydrolysis opens transporter to cytoplasm and substrate enters cytoplasm

40
Q

peptidoglycan general structure

A

-polysaccharide backbone (made from disaccharide monomer) linked by peptides = glycan tetra-peptide

41
Q

disaccharide monomer of peptidoglycan

A

-N-acetylmuramic acid (MurNAc) & N-acetylglucosamine (GlcNAc) linked through B (1,4) linkages

42
Q

B (1,4) linkages of peptidoglycan are _____

A

the bonds broken by lysozyme when degrading peptidoglycan

43
Q

tetrapeptide of peptidoglycan is found in ______

A

mature peptidopglycan (immature form has extra a.a that are cleaved off)

44
Q

tetrapeptide of peptidoglycan is attached to _____

A

-N-acetylmuramic acid (MurNAc) via COOH group

45
Q

tetrapeptide of peptidoglycan in e-coli

A

-l-alanine (connected to MurNAc)
-d-glutamic acid
-diaminopimelic acid (forms peptide cross-links to neighbouring d-alanine)
-d-alanine

46
Q

some gram + bacteria like staphylococcus aureus have _____ in peptidoglycan (gram - bacteria have direct links)

A

peptide interbridges (ex. glycine) between tetrapeptides (thick peptidoglycan)

47
Q

glycosidic bonds of peptidoglycan are ___ while peptide bonds are ____

A

-within one layer (strength around cell)
-between layers (strength along axis of cell)

48
Q

diaminopimelic acid (DAP) is the _____

A

acid version of lysine (EXTRA NH2)

49
Q
  • In Gram-negative bacteria the peptidoglycan layer is ____ and is located ______
  • In Gram-positive bacteria, the peptidoglycan layer is _____ and is located _____
A

-2-7 nm thick (1-3 layers)
-between the inner and outer membranes
-between 20 and 35 nm thick (~15 layers)
-outside the plasma membrane

50
Q

Particles of _____ can freely traverse the peptidoglycan layer, while others need a protein channel/carrier + examples

A

2 nm or less (Na+, H2O, monosacc., disacc., ATP, lysozyme sometimes)

51
Q

Teichoic acids are what?

A

-sugar-alcohol phosphate thats form covalent bonds with peptidoglycan

52
Q

Lipoteichoic acids are _____

A

Teichoic acids attached to lipids (attach cell wall to cell membrane)

53
Q

Teichoic acid monomer structure

A

-ribitol (reduced form of ribose with OH groups- linear)
-3 peptides attached to OH groups of ribitiol and 2 phosphate attached to ends of ribitol

54
Q

gram negative outer membrane descr.

A
  • Asymmetric
  • Inner leaflet = phospholipids
  • Outer leaflet = lipopolysaccharide (LPS)
55
Q

parts of LPS (outer to inner)

A

-O-specific polysaccharide (repeats, interacts with environment/immune system, strain dependent)
-core polysaccharide (more variable, KDO + Hep sugars +PO4)
-Lipid A (anchored in membrane with acyl chains & GlcN sugar + phosphate)_

56
Q

lipid A core is made in ____ while O -antigen is _____

A

-one piece
-made in another process which allows for diversity of O.antigen

57
Q

O antigen biosynthesis

A

O-antigen is synthesized in undecaprenyl pyrophosphate in cytoplasm and it’s flipped into periplasm by Wzx (ATP-independent) and repeating units are synthesized by Wzy & Wzz

58
Q

LPS core biosynthesis

A

core synthesized in cytoplasm then MsbA (ABC transporter) flips lipid A CORE in periplasm

59
Q

LPS core and O-antigen ligation & export

A

-WaaL helps lIgate lipid core to O-antigen with energy from PP of O-antigen/undecaprenyl pyrosphospate
-ABC transporter (Lpt proteins) experience conformational change to LptA (bridge from cytoplasmic membrane to outer membrane) to move LPS to outer membrane

60
Q

endotoxin of lipopolysacchride is _____

A

lipid A portion

61
Q

lipopolysaccharide function

A
  • Contributes to negative charge on cell surface
  • Helps stabilize outer membrane structure
  • May contribute to attachment to surfaces and biofilm formation
  • Creates a permeability barrier
  • Protects from host defenses (O antigen)
62
Q

porins are ______

A
  • Mostly β-barrel trimeric proteins that allow molecules
    to passively cross membranes found in gram-negative outer membrane
63
Q

porins function

A

*Contribute to making outer membrane more permeable than cytoplasmic membrane

64
Q

Types of Secretion systems in gram negative bacteria

A

1) Type I: secrete proteins outside cell
2) Type II: secrete proteins outside cell but proteins from Sec/Tat
3) Type V: like Type II but protein is unfolded first
4) Type III: secrete protein in another bacterial cell
5) Type IV: like Type III but DNA instead (like pilus)
6) Type VI: like type III but has sheath/needle that contracts to inject cell

65
Q

S layers are what?

A
  • Crystalline later of (glyco)proteins
  • Uncommon in bacteria
  • Self-assemble into 2-dimensional sheets attached to LPS or peptidoglycan
  • Protection against bacteriophage, low pH, lytic enzymes
66
Q

There are multiple configurations of _____

A

cell envelope

67
Q

capsules are ____

A

really long polysacch. that help with protection and help with attachment (slime layer)

68
Q

glycocalyx (def.)

A

all the polysaccharides outside cell membrane

69
Q

glycocalyx examples

A
  • Lipopolysaccharide/teichoic acid/S-layer glycans
  • Capsule
  • Alginate
  • Poly-N-acetylglucosamine
  • Enterobacterial common antigen
  • Cellulose
70
Q

pili are what?

A

-Thin (2–10 nm in diameter) filamentous structures
* Made of protein
* Extend from the surface of a cell
* Retractable

71
Q

pili are found in _____

A
  • all Gram-negative bacteria and many Gram-positive bacteria
72
Q

pili or fimbrae functions

A
  • Conjugation (transfer of genetic material)
  • Electrically conductive pili
  • Type IV pili (type of secretion system)
73
Q

Type IVa pilus structure

A

-pilus made for pilin subunit
-structure that stabilizes pilus in peptidoglycan and anchor in inner membrane

74
Q

motility on solid surfaces

A

a) twitching: uses pilus that extends, attach to surface and then retracts causing forward movement
b) gliding: uses helical intracellular protein track with extracellular adhesion proteins & PMP –> helical movement of adhesion portions causes forward motion and rotation of cell

75
Q

motility on semisolid surfaces

A

-swarming (mediated by flagella, coordinated movement that leads to dendritic patterns)

76
Q

types of bacterial flagella

A

1) peritrichous (multiple all over)
2) polar (1 at a pole of cell)
3) lophotrichous (multiple @ one pole)

77
Q

bacterial flagella grows ___

A

at the ends as flagellin is transported through hollow tube

78
Q

flagella uses ____ to propel movement as____

A

-PMP
-protons enters cells through stator

79
Q

parts of flagella

A

-hollow filament made of flagellin monomer
-hook (flexible)
-motor (MS/C ring)
-stator (anchors flagella in peptido. + cytoplasm)

80
Q

flagella synthesis

A

-MS/C ring + motor proteins
-P ring
-L-ring
-early hook
-late hook + cap
- filament synthesis + cap on top

81
Q

e-coli flagella

A

peritrichous

82
Q

swimming motility of peritrichous flagella

A

CCW rotation - cell runs (fwd motion)= bundled flagella
CW rotation - cell tumbles = flagella spread apart

83
Q

swimming motility of polar/lophotrichous flagella

A

a) reversible flagella –>
CCW rotation - cell runs (fwd motion)
CW rotation - cell reverses
b) unidirectional flagella
CW rotation - cell runs (fwd motion)
rotation stops + random reorientation
CW rotation - cell runs

84
Q

chemotaxis

A

movement of bacteria in a chemical gradient (generally towards higher concentration of nutrients)
- net movement towards attractant (runs are longer)- random tumbles still occurs sometimes away from attractant

85
Q

phototaxis

A

movement of bacteria towards light/ maybe specific wavelength

86
Q

aerotaxis

A

movement of bacteria according to oxygen conc.

87
Q

magnetotaxis (gram negative)

A

movement of bacteria in magnetic field