Viral Respiratory Pathogens Flashcards
Respiratory Viruses
Categories
Viral Respiratory Infections
Overview
- Viruses cause 75-80% of respiratory infections
- Greatest incidence in young children
- Each virus targets certain age groups & certain parts of respiratory tract
- One virus ⇒ many disease syndromes
- One syndrome ⇒ many viral causes
- Severity ranges
Viruses by Location
Viruses by Syndrome
Common Cold
Characteristics
-
Most common viral pathogens
- Rhinovirus
- Parainfluenza
- RSV
- Adenovirus
- Coronavirus
- Seasonal variations in peak incidence
- Spread via respiratory secretions
- Enters RT as aerosolized droplets
- Larger droplets ⇒ nose
- Smaller droplets ⇒ airways or alveoli
- Generally 1-4 day incubation period
- Adults ⇒ 2-3 colds / yr
- Kids ⇒ 8-12 colds / yr
Common Cold
Syndromes
- Rhinitis ⇒ inflammation of nasal mucosa
- Sinusitis ⇒ inflammation of sinus mucosa
- Pharyngitis ⇒ inflammation of pharynx and throat
- Conjunctivitis
- Otitis media
Common Cold
Symptoms
- Headache
- Nasal discharge and congestion
- Cough
- Coryza ⇒ catarrhal inflammation of the mucous membranes in nose, caused esp. by a cold or by hay fever.
- Fever
- N/V
Common Cold
Severity
- Most are acute, relatively mild, self-limited
- Severe illness in infants, elderly, chronically ill, and immunocompromised
Common Cold
Complications
Mostly secondary bacterial infections.
See otitis media, sinusitis, or PNA.
LRT
Viral Infections
- Influenza and RSV most common
- Incubation ⇒ 1-4 days
- Communicable
- Respiratory droplets
- Direct transmission via fomites
Viral Respiratory Infection
Pathogenesis
-
Entry via URT including nose and eyes
- Viral inoculum ∝ pathogenesis
-
Infection occurs in respiratory epithelium
- ± Airway cell destruction
- ± Epithelial denuding
- ± Ciliary compromise
- Normal clearance impaired
-
± Interaction w/ immune system
- ∆ Phagocytic cell function
- Promote immediate hypersensitivity reactions
- Virus-induced wheezing and asthma
Seasonality
Each virus predominants during a certain time period with overlap.
Viral Immunity
-
Cytotoxic CD8+ T-cells
- Major role in combating current infection
- Long-lived memory T cells
- Secretory IgA ⇒ important for URT
- Circulating IgG ⇒ important for LRT
- Immunity may be transient and partially protective
- Multiple serotypes ⇒ “new” infection each time
- Antigenic variants of recirculating viruses ⇒ immunity not completely cross-protective
Rhinovirus
Characteristics
- Picornavirus family
- Enterovirus genus
- Non-enveloped
- Non-segmented ⊕-sense ssRNA virus
- Acid labile
-
Antigenic diversity ⇒ > 100 serotypes
- Circulates simultaneously but most prevalent types change yearly
- Ab to ~ 50% of serotypes by adulthood
- Infection ⇒ lasting type-specific immunity
Rhinovirus
Lifecycle
-
Binds cellular receptor ⇒ species barrier
- ICAM-1 ⇒ 90%
- VLDL receptor ⇒ 10%
- Entirely cytoplasmic
- Infectious only to humans and chimpanzees
- Replication most efficient @ 33°C
Rhinovirus
Clinical Features
- Transmitted via respiratory aerosols or fomites
- Viral load ∝ sx severity
- Incubation ⇒ 2-5 days
- Symptoms ⇒ 3-7 days
- Viral shedding ⇒ up to 3 weeks
Rhinovirus
Pathogenesis
- 1° site @ epithelial surface of nasal mucosa
- Minimal direct virus-induced cell damage
-
Majority of sx immunogenic
- Nose becomes inflamed and hyperemic
- Discharge becomes mucopurulent w/ many PMNs
-
Primary sx generally mild
- Rhinorrhea
- ST
- Minimal cough
- Low grade fever
- Can induce COPD and asthma exacerbations
Rhinovirus
Epidemiology
-
Most frequent cause of common cold in adults
- ⅓ to ½ of cases
-
Major cause of common cold in children
- Major reservoir
- Peak activity in fall and spring
- 3-4 serotypes abundant at a time
- Rhinovirus A and B ⇒ URTI
- Rhinovirus C ⇒ LRTI
Rhinovirus
Immunity
- Infection ⇒ serotype-specific immunity
- Primarily due to nasal sIgA
- Cytotoxic T-cells also very important
Rhinovirus
Dx, Tx, and Prevention
- Clinical dx
- Symptomatic tx w/ supportive care
- No abx
- Vaccine development unlikely
Coronavirus
Characteristics
-
Enveloped, helical nucleocapsid
- Contains large, widely spaced, crown-like spikes
- S and M glycoproteins
- Linear, non-segmented, ⊕-sense ssRNA
- Only 2 serotypes in humans
-
Can undergo rapid genetic change
- Alterations in clinical disease
- “Trans-species” movement to new hosts
Coronavirus
Envelope
-
S glycoprotein (spike)
- Large crown-like surface projections
- Receptor binding
- Cell fusion
- Major antigen
-
M glycoprotein (membrane)
- Transmembrane
- Packaging and budding
- Envelop formation
Coronavirus
Clinical Features
- Incubation ⇒ 2-3 days
- Symptoms ⇒ 3 days
- Viral shedding ⇒ 1-4 days
- Little or no systemic immunity
- Local immunity lasts 1-2 years
Coronavirus
Replication
- Viral encoded RNA-dependent RNA polymerase
- Nested subgenomic mRNA transcribed from ssRNA
- One protein translated from each message
Coronavirus
Transmission
- Aerosols of respiratory secretions
- Direct transmission via fomites
- Fecal-oral transmission rare
Coronavirus
Epidemiology
-
Accounts for 10-30% of all colds
- Usually in URT
- LRT disease used to be uncommon
- Fewer infections in children than rhinoviruses
- Young children most likely infected
- Most people infected w/ 1+ common coronaviruses in lifetime
- Winter and spring seasonality
Coronavirus
Symptoms
-
Common cold sx
- Rhinorrhea
- Coughing
- Sore throat
- Headache
- Fever
-
Can sometimes cause LRTI ⇒ bronchitis or PNA
- People w/ cardiopulmonary disease
- Immunocompromised
- Infants
- Elderly
- Gastroenteritis in infants
Coronavirus
Dx, Tx, and Prevention
- Diagnosis
- Clinical suspicion for common human coronavirus
- Serology for complicated/novel cases
- MERS, SARS, COVID-19
- Treatment
- Symptomatic
- No abx
- Prevention
- Currently no vaccine
- Wash hands
- Avoid touching face
- Avoid close contact with sick people
SARS
Overview
Severe Acute Respiratory Syndrome
- Caused by SARS-CoV-1
-
Mortality 3-6%
- 45-63% in persons > 60 y/o
- Severe viral PNA
- Associated Coronavirus SARS-HCoV
- Incubation ⇒ 2-7 days
-
Greatest transmission around 10th day
- When person is sickest ⇒ easy to isolate
- Began with bats ⇒ Civet cats ⇒ humans
SARS
Symptoms
- High fever (usu. > 100.4 F)
- Headache
- Mild respiratory sx
- Myalgia
- Fatigue
- Diarrhea ⇒ 10-20%
- Non-productive cough ⇒ day 2-7
- Chills
- Dizziness
- Many pts develop PNA
SARS
Diagnosis
- PCR of two sites or two different times
- ELISA test for Ab
MERS
Overview
Middle East Respiratory Syndrome
- Caused by MERS-CoV
- Distinct from other coronavirus
- Most similar to those found in bats
- Also found in camels
-
Transmission mode unclear
- Few primary cases with direct camel contact
MERS
Clinical Presentation
-
Range of presentations
- 62% severe respiratory illness
- 5% mild sx
- 21% asymptomatic
- Data from early cases
- High mortality
- LRTI, fever
- Data from more recent cases
- Lower mortality
- Higher proportion w/ URTI
- No vaccine, no specific treatment
MERS
Symptoms
- Fever > 38°C or 100.4°F
- Cough
- SOB
- Malaise
- Vomiting
- Diarrhea
- PNA
MERS
Transmission and Epidemiology
- 65% male
-
Age ranges 9 m/o to 94 y/o
- Median 49 y/o
- Mean 56 y/o
-
Infectious period unclear
- Not believed to be contagious before sx onset
-
~75% identified as “secondary”
- Mostly healthcare workers ⇒ 19%
- Many with little or no sx
- Many clusters
- No sustained person-to-person transmission
COVID-19
Overview
Coronavirus disease 2019
- Caused by SARS-CoV2
-
Incubation ⇒ 2-14 days
- Median 4-5 days
- ↑ Risk of severe illness in specific populations
- Cardiopulmonary disease, DM, immunodeficiency
COVID-19
Transmission
-
Transmits easier from person-to-person
- Droplet
- Aerosol
- Contact/fomites
- ? Fecal-oral route
- Transmits easily when sx early or pt asymptomatic
COVID-19
Clinical Presentation
- Most common sx
- Fever
- Cough
- SOB
- Other sx
- Sore throat
- Runny or stuffy nose
- Body aches
- Headache
- Chills
- Fatigue
- Nausea and diarrhea
- Loss of taste and smell
- Myocarditis demonstrated in asymptomatic pts
- Elderly w/ higher rates of severe illness
- Children and younger adults w/ less severe illness and less death
- ? Effect on pregnant women and fetus
COVID-19
Testing
- PCR from anterior nasal swab
- ELISA test for Ab
Novel Coronaviruses
Comparison