Mycobacteria, Other AFB, Antimycotic Agents Flashcards
Mycobacteria
Morphology and Cultivation
- Slender, straight or slightly curved rods (1-4 cm)
- Colonies appear rough, granular, and buff-colored
- Some atypical mycobacteria are rapid growers
- Most very slow growing, including M. tuberculosis
- Generation time up to 18 hrs

Mycobacteria
Species

Mycobacterial Infection
Classification
-
Mycobacerium tuberculosis
- ~ ⅓ of world population infected
- Humans only known reservoir
- 85% of TB cases present with pulmonary sx
-
Mycobacterium avium-intracellular
- Atypical mycobacteria
- Ubiquitously found in fresh and salt water worldwide
- Usu. only infects immunocompromised pts
- Mostly pulmonary disease but also infects other tissues
-
Mycobacterium leprae
- Causes leprosy
- Infects skin and peripheral nervous system
- Very slow growing ⇒ progressive course over a long time
Mycobacteria
Properties
- Aerobic
- Bacillus ⇒ slender straight or curved rods
- Highly resistant to:
- Drying
- Many disinfectants
- Acids
- Alkalis
- Heat sensitive

Mycobacteria
Cell Wall
Lipids are 60% of cell wall structure
Inside ⇒ outside:
- Cytoplasmic membrane
-
Lipoarabinomannan (LAM)
- Anchored to cell membrane
- Functionally related to O-antigen of LPS
-
Murein ⇒ thick peptidoglycan layer
- 2 chains of alternating sugars linked by polypeptide chains
-
Arabinogalactan ⇒ polymer consisting of arbinose and galactose
- Attached to cell wall & mycolic acid chains
-
Mycolic acids ⇒ long alkyl chains
- Each arabinogalactan attached to 60-90 myolic acid chains
- Forms waxy protective lipid shell
- Additional lipids also present
- Reason for resistance to acid decolorization
- Do not take up dyes in gram staining
- Contributes to abx resistance
- Outer membrane of secreted phospholipids

Mycobacteria
Visualization
-
Ziehl-Neelson or Kinyoun stains ⇒ bacteria that retain the primary stain after decolorization are called acid-fast ⇒⇒ Mycobacteria called acid fast bacilli (AFB)
- Apply primary stain, carbol fuchsin
- Decolorize with acid alcohol
- Counterstain with methylene blue
- Visualize by fluorescent staining ⇒ Auramine-rhodamine

Tuberculosis
Epidemiology
- Globally:
- ~ 2.3 billlion Latent TB Infections (LTBI)
- ~ 9 million new active cases / yr
- ~ 1.4 million deaths / yr
- 22 countries have 80% of all TB cases
- USA:
- ↑ incidence since 1985
- Likely d/t AIDS epidemic
- ↓ since 1993
- TB control programs
- ↑ incidence since 1985

Tuberculosis
Transmission
- Via inhalation of mycobacteria in droplet nuclei
- ~ 3,000 in a single cough
- < 10 bacilli may initiate infection
-
Droplet nuclei dry and may become airborne
- Remains infectious for extended periods
Tuberculosis
Transmission Risk Factors
- Overcrowded areas
- Prisons
- Foreign born
- HIV-infection
Tuberculosis
Invasion
Facultative intracellular pathogens
- Ingested by alveolar macrophages
- Grow within non-activated MΦ and outside of them
- Prefers sub-pleural location near fissures
- Lesion development, progression, and resolution depends on:
- # of mycobacteria inhaled
- Subsequent multiplication
- Host immune response

M. tuberculosis
Virulence Factors
-
Facultative intracellular pathogen
- Able to grow within MΦ
-
Liproarabinomannan (LAM)
- ⊗ MΦ activation
- Scavenges oxygen radicals
- ⊗ Phagolysosome fusion
TB
Exposure
- ⊕ Contact with a person w/ contagious pulmonary TB
- ⊖ PPD skin test
- Normal CXR
- Some exposed persons develop infection w/ subsequent PPD conversion, others do not
Tuberculosis
Infection
- ⊕ PPD skin test
- No physical findings of disease
- CXR normal or reveals old granulomas or calcifications in lung or regional lymph nodes
- Requires preventative therapy
- 90% remain asymptomatic
- ~ 5% develop disease within 2 years of infection ⇒ primary TB
-
~ 5% develop disease at some later time ⇒ reactivation disease
- Usually d/t ↓ immune response with age, immunosuppressive disease, or therapy

Tuberculosis
Disease
Infected individual with signs, symptoms, and/or radiographic findings consistent with disease.
May be pulmonary and/or extrapulmonary.

Tuberculosis
Clinical Infection
Characterized as a chronic pneumonia.
Onset is insidious.
Primary TB is usually mild.
-
TB is an indolent, wasting, fibrile illness
- Chronic productive cough ± hemoptysis
- Fatigue
- Weight loss
- Night sweats
- Weakness
- Fever
TB
Primary Infection
Varies: completely asymptomatic → primary progressive disease
- Early during infection prior to immune response ⇒ organisms grow uninhibited @ pulmonary & additional sites
-
Tubercle or Ghon focus ⇒ productive granuloma caused by mycobacteria
- Center ⇒ multinucleated giant cells containing organism ± caseous necrosis
- Middle ⇒ epitheloid cells
- Outer ⇒ fibroblasts, lymphocytes, and monocytes
- Ghon complex ⇒ granuloma within the lung and within a draining hilar LN
- Granuloma may heal by fibrosis and calcification ⇒ lung scarring
- May result in lymphohematogenous spread throughout body & seeding of lung apices

Progressive Primary TB
- May directly result from lesion eroding into bronchioles ⇒ cavitation & dissemination within lung
- Lymphohematogenous spread ⇒ remote dissemination ⇒ miliary tuberculosis
- Child < 5 y/o @ high risk for progressive 1° TB

Secondary Pulmonary TB
Etiology
- Most cases d/t reactivation of latent TB
- Usually in apical portion of lung
- Leads to chronic pulmonary diseases w/ 1 or more productive lesions
- Associated with conditions that ⊗ immune system
- Alcoholism
- DM
- Old age
- Immunosuppressive therapy
- AIDS
- Can result from an exogenous secondary infection
- Exposed to TB again

Secondary Pulmonary TB
Manifestations
- Cough
- Fever
- Fatigue
- CXR ⇒ usually show upper lobe involvement with a cavitary lesion
- ± TB pleurisy w/ rupture of cavity or granuloma into pleural space ⇒ empyema
- Sputum smear and PPD usually ⊕

Miliary Tuberculosis
Dissemination and seeding of TB bacilli to various distant organs.
- Develop infectious foci in meninges, urogenital tract, peritoneum, skin, bones, etc
- Usually occurs in immunocompromised individuals
-
Most commonly occurs w/ primary infection
- Can also occur during reactivation
- Focal sx may be absent ⇒ difficult to dx
- PPD skin test often ⊖
- Communicability of miliary TB relatively low
- If lungs involved, CXR shows “miliary” pattern
- Clinical manifestations:
- Fever
- Night sweats
- Weight loss

Extrapulmonary TB
Meningitis
- Indolent onset HA with systemic sx
- CSF ⇒ PMNs early then lymphocyte predominance, low glucose, high protein
- Imaging ⇒ enhancement of basilar meninges

Extrapulmonary TB
Renal Disease
- Infection of renal parenchyma
-
Sx ⇒ dysuria, frequency, flank pain
- Fever and systemic sx uncommon
- Sterile pyuria ⇒ WBC in urine with no organisms
- Organism frequently grows from urine if repeated AFB urine cultures performed

Extrapulmonary TB
Bone Disease
- Spine affected in 50% of cases w/ bone involvement ⇒ Potts disease
- Hips and knees less affected
- Pts usually c/o pain
- ± Fever

Extrapumonary TB
Local LN Disease
- Most commonly occurs in children < 15 y/o
- Can be caused by M. tuberculosis or M. scrofulaceum
- Cervical lymph nodes most commonly involved ⇒ Scrofula
- Dx ⇒ excisional biopsy or fine-needle biopsy

Extrapumonary TB
Other Sites
- GI tract
- Pericarditis
- Peritonitis

TB & HIV
- ↑ Prevalence of TB in HIV infection
- All pts w/ TB need HIV testing and vice versa
-
Early HIV infection ⇒ presentation similar to immunocompetent host
- Indolent onset of cough, fever, sweats
- Extrapulmonary manifestations in 10-15%
- CXR shows upper lobe infiltrates ± cavitation
- PPD usually ⊕
-
Advanced HIV infection ⇒ atypical presentation
-
PPD usually ⊖
- No immune response
- CXR shows lower lobe or diffuse infiltrates
- Cavitation rare
-
Extrapulmonary disease in > 50%
- Often occurs w/o pulmonary disease
-
PPD usually ⊖
- M. avium-intracellulare complex ⇒ causative agent of disseminated infection in AIDS pts
Mycobacteria
Immunity
- Grow uninhibited within non-activated MΦ early during infection
-
Ingestion by MΦ ⇒ innate immunity activation
- Release IL-12, TNF-α, IL-6, IL-1
-
PMNs, MΦ, and T-cells recruited to site
- Lymphocytes activated in nearby lymph nodes
- Can take 6-8 weeks
- Lymphocytes activated in nearby lymph nodes
-
T-cell mediated response ⇒ containment and/or resolution
- Releases IFN-𝛾 ⇒ activate MΦ
- Activated MΦ can partially inhibit mycobacterial growth
-
Activated MΦ ⇒ epithelioid cells ⇒ granuloma ⇒ walls off infected cells ⇒ fibrosis and calcification ⇒ tubercle formation
- Type IV hypersensitivity
-
Immune response limits infection but damages lung
- Elimination vs immune injury varies w/ # of organisms present & strength of immune response
Tuberculosis
Clinical Diagnosis
- Hx of compatible sx in pt w/ potential exposure or risk factors ⇒ high suspicion
- Physical exam often nonspecific
- Routine labs often nonspecific
- May see normocytic anemia
- May have elevated ESR
- WBC count varies/may be normal
Tuberculosis
CXR
1° TB ⇒ lower lobe infiltrate ± Ghon complex
2° TB ⇒ upper lobe involvement ± cavity
Tuberculosis
Dx Staining
- ⊕ Acid-fast smears only presumptive e/o TB
- False ⊕ can occur from environmental contamination
- ~60% of positive cultures ⇒ ⊕ smears
Tuberculosis
Dx Culture
Definitive dx by culture isolation only
- Inoculated on complex media w/ organic substances
- Egg yolk, animal serum, tissue extracts
- Often contain abx or malachite green to inhibit growth of other macteria
- Lowenstein-Jensen (solid medium) ⇒ slow growth 3-8 wks
-
Middlebrook 7H10 (liquid broth) ⇒ 1-3 weeks
- Cannot grow all strains
- Both cultures must be done
Mycobacteria
Biochemical Tests
Production of niacin
Distinguishes M. tuberculosis from atypical mycobacteria.
Nucleic Acid
Amplification Techniques
Rapid tests that ID M. tuberculosis in clinical specimens within a few hours.
- Sensitivity for smear ⊕ specimens very high
- Sensitivity for smear ⊖ specimens ~ 45-75%
- Must still perform culture for sensitivity testing
- Technically complex and very expensive
IFN-𝛾 Release Assay
(IGRA)
Measure in-vitro IFN-𝛾 response to specific Mtb antigens.
- Ag not present in non-tuberculous mycobaceria or BCG strains
- Useful to screen individuals vaccinated with BCG
- Blood test ⇒ only 1 visit
- Technical complexity limits use
Tuberculin Skin Test
(TST)
- Useful for dx and control of TB
-
⊕ Result ⇒ recent or past TB exposure
- Have T-cells against AFB ⇒ Type IV DTH
- No info on activity of disease
-
Mantoux test ⇒ most accurate and reliable
- Intracutaenous injection of 0.1 ml of purified protein derivative (PPD)
-
⊕ Rxn indicated by erythematous indurated area > 5-10 mm
- See ⊖ results with infection in AIDS or other T-cell deficiencies ⇒ anergic
- Requires pt to return for reading in 48-72 hrs
-
Two-step TST testing
- See initial false ⊖ result d/t waning cutaneous immunity in remote infections
- Can convert to ⊕ if 2nd TST w/in 2-3 weeks of initial test
- Recommended for healthcare workers and elderly pts

Urine Cultures
30-40% of urine cultures may be ⊕ in case of extrapulmonary infections
Active TB
Treatment Overview
- High mutation frequency leads to drug resistance ⇒ treat w/ multiple drugs simultaneously
- Before abx sensitivity results available, treat according to risk for MDR infection
- Initially all pts treated with 4 drugs
- Susceptibility results w/o MDR disease ⇒ change to 3 drugs
- Susceptibility results with MDR disease ⇒ change to 5 drugs based on resistance
- Should have ⊖ sputum cultures in 85% after 2 months & 90-95% after 3 months
- If sputum culture remains ⊕ after 3 months ⇒ consider non-adherence vs re-eval for resistance
TB
Prevention
-
Purpose:
- Prevent latent infection from progressing to clinical disease
- Prevent initial infection
- Prevent recurrence of past disease
- Usual preventative therapy ⇒ isoniazid for 6 months in non-HIV pts
- May be composed of up to 3 drugs
TB
Vaccination
-
Give Bacillus Calmette-Guerin (BCG)
- Attenuated strain of M. bovis
- Used in several European and South American countries
- 10-70% success rate in preventing TB infection
- Effective in ↓ risk of miliary and meningeal forms of TB
- Results in ⊕ PPD test
- IGRA preferred screening test
TB
Infection Control
-
Respiratory isolation when TB suspected
- ⊖ Pressure room with doors closed
- Providers use N95 masks
- Respiratory isolation during first 2 weeks of treatment for confirmed TB
- Contact tracing and screening programs
Mycobacerium Avium Complex
(MAC)
M. avium-intracellulare
Common opportunist in immunocompromised pts esp. AIDS and transplant recipients.
- Ubiquitous organism found in soil, fresh and salt water
- Not transmitted person to person
- Difficult to treat
- More resistant to abx
- Poor host immune status
Norcardia
Overview
-
3 species cause human disease
- N. asteroides ⇒ most common
- N. brasiliensis
- N. cavae
- Found in soil
- Transmission
- Inhalation ⇒ pulmonary infection
- Direct inoculation into skin or subQ tissue
- Infection may disseminate hematogenously ⇒ many organ systems
- Predilection for brain abscess formation
Norcardia
Morphology
- Gram ⊕
-
Partially acid-fast
- Have shorter myolic acid chains than Mycobacteria
-
Filamentous ⇒ looks like hyphal elements in tissue
- Fragments ⇒ bacillary or coccoid forms

Norcardia
Pathogenesis
- Morbidity attack rate ~ 500-1K cases/yr
- Non-communicable
- Inhalation of organisms ⇒ lobar pneumonia
- Metastatic foci may involve the brain, kidney, or skin
- ⊗ Lysosome-phagosome fusion
Norcadia
Pathological Features
- Multiple abscesses w/ infiltration of PMNs and central necrosis
- Burrowing sinuses and granulomas are not characteristic

Norcardia
Diagnosis
- Microscopic exam of sputum, skin lesions, and surgical materials
- Look for gram ⊕ branched filaments
- May mis-diagnose as TB
- Grows on normal media over wide temp. range
- Incubate @ 40-50°C ⇒ inhibit most other bacteria
- Culture under aerobic conditions
Norcardia
Treatment
Sulfonamides preferred
Isoniazid
Indications
Part of drug combo for active and latent TB
Bactericidal against growing bacterial
Bacteriostatic against dormant bacteria
Isoniazid
MOA
- Prodrug activated via oxidation rxn by mycobacteria enzyme katG (catalase-peroxidase activity)
- Active compound:
-
Acylates inhA enzyme
- Responsible for mycolic acid synthesis
-
Acylates NADH dehydrogenase
- Needed to catalyze the rxn
-
Acylates inhA enzyme

Isoniazide
Resistance
Due to mutation in KatG, inhA, or NADH dehydrogenase
Isoniazid
Metabolism
Extensively metabolized to inactive compounds:
- N-acetyltransferase converts to N-acetylisoniazide
- Isozymes ⇒ rapid vs slow acetylators
- May have to adjust dose for rapid type
- N-acetylisoniazide ⇒ N-acetylhydrazine
- Substrate for CYP-450 ⇒ reactive intermediates
- Damages liver proteins ⇒ hepatotoxicity
- Slow acetylators more prone d/t build-up of metabolites
- Damages liver proteins ⇒ hepatotoxicity
- Substrate for CYP-450 ⇒ reactive intermediates
Isoniazid
Adverse Effects
- Elevation of serum transaminase
- Age-dependent hepatitis
-
Peripheral neuritis
- Due to Vit B6 (pyridoxine) depletion
- Prevent w/ supplemental Vit B6
- Drug-induced lupus in slow-acetylators
Isoniazid
Drug Interactions
- Phenytoin toxicity in slow-acetylators
- Extra isoniazide inhibits hepatic microsomal enzymes
Ethambutol
Indications
Used in combo to treat active TB & M. avium-intracellular
Bacterostatic @ low doses
Bactericidal @ high doses
Ethambutol
MOA
⊗ arabinosyl transferase ⇒ ↓ arabinogalactan synthesis
Enzyme adds arabinose units to arabinogalactan chain
Ethambutol
Resistance
Via over-expression of arabinosyl transferase.
Ethambutol
Metabolism
Majority excreted into urine unchanged
Ethambutol
Adverse Effects
-
Optic neuritis ⇒ blindness and/or vision impairment
- Monitor visual acuity and color perception
-
Impairs red-green color discrimination
- Eye exam required
Pyrazinamide
Indications
- Shortens duration of treatment when used in combo
- Some e/o activity against non-replicating persistent mycobacteria
- Bactericidal against even slow growing TB
Pyrazinamide
MOA
- Pyrazinamide ⇒ pyrazinoic acid by deamination by pyrazinaminidase
- Transported to extracellular compartment via efflux pump
- Protonated in acidic environment of phagolysosome
- Protonated lipid soluble compound re-enters mycobacterium
- ⊗ fatty acid synthase type I ⇒ ⊗ mycolic acid synthesis
- May also work by acidifying intracellular environment

Pyrazinamide
Resistance
Via mutations of pyrazinaminidase
Pyrizinamide
Metabolism
Mostly hepatic metabolism
Pyrazinamide
Adverse Effects
-
Hepatotoxicity
- Related to dose and length of treatment
- Usu. when given for > 2 months
-
Hyperuricemia
- Due to inhibition of excretion
- Monitor uric acid
Rifampin
Indications
Bactericidal
-
Used in combo to treat:
- Active TB
- Mycobacterium leprae (Leprosy)
- Legionella pneumophilia (Legionnaire’s disease)
-
Used for prophylaxis:
- When isoniazid resistant
- Where risk of hepatotoxicity is significant
- Exposure to Neisseria meningitidis
- Exposure to Haemophilus influenza type b
Rifampin
MOA
- Binds β subunit of DNA-dependent RNA polymerase (rpoB)
- Forms stable drug-enzyme complex
- ↓ chain formation in RNA synthesis
- Good penetration into tissues and TB lesions
Rifampin
Resistance
Due to alteration of DNA-dependent RNA polymerase (rpoB)
Resistance develops rapidly if used as a monotherapy.
Rifampin
Metabolism
Mostly hepatic metabolism
Undergoes enterohepatic cycling
- Causes significant CYP-450 induction
- Repeated admins will ↓ drug concentration
Rifampin
Adverse Effects
-
Can impair liver function ⇒ hepatitis
- Alcohol ↑ risk
- Red-orange discoloration of urine, tears, and saliva
-
Hypersensitivity reaction common
- See flu-like illness w/ fever, chills, fatigue, and HA
-
Multiple drug interactions
- Due to CYP-450 induction
- Can ↓ effectiveness of anticonvulsants, oral contraceptives, and other drugs
Rifabutin
- Similar indications and MOA as rifampin
- Less potent inducer to CYP-450
- Used instead of rifampin to treat TB in HIV pts
- Used for prevention and treatment of M. avium complex
MDR-TB
Medications
Streptomycin and Amikacin
(aminoglycosides)
• Given parenterally, not as convenient
TB Treatment
Challenges
- Replicate more slowly
- Can exist in a dormant state
- Intracellular organisms
TB Therapy
Principles
- Drug combos always given to minimize development of resistance
- Also shortens duration of therapy
- Meds must be taken regularly
- Therapy must continue for a period sufficient to resolve the illness
Active Tuberculosis
Treatment
- Confirm dx by culture and test for susceptibility
-
Standard initial phase treatment ⇒ daily doses of “RIPE”
- Rifampin
- Isoniazid
- Pyrazinamide
- Ethambutol or streptomycin
- Once susceptibility shown ⇒ ethambutol/streptomycin can be discontinued
-
After 2 months ⇒ pyrazinamide stopped
-
Isoniazid and rifampin continued for 4 more months
- 2-3 times per week
-
Isoniazid and rifampin continued for 4 more months
- Rifabutin used in HIV pts for entire 6 month period
- Normal course of treatment lasts 6 months
- Pts with other comorbidities will require prolonged treatment
- Sputum monitored weekly until no e/o TB
Latent Tuberculosis
Treatment
~10% develop active TB over lifetime s/p infection
Must exclude active disease before treatment for latent TB
-
Candidates for prophylaxis
- Known exposure to someone with active TB until ⊖ TST
- Pts who recently converted to ⊕ TST
- ⊕ TST w/ risk for progression from latent to active TB
-
Possible drug regimens
- Isoniazid (INH) 300 mg/d x 6-9 months
- Rifampin (RIF) daily for 3-4 months
-
Weekly isoniazid + rifapentine for 3 months
- Only with directly observed treatment (DOT)
Drug-resistant TB
- Improper drug use ⇒ resistance
-
17% of newly dx TB cases resistant to 1 or more first-line agents
- Isoniazide most common (10%)
- Treat longer with drugs that are active
- Multidrug-resistant TB (MDR-TB) ⇒ caused by organism that is resistant to at least isoniazid and rifampin
-
Extensively drug resistant TB (XDR-TB) ⇒ caused by organism resistant to isnoiazid, rifampin, and other drugs
- Fluoroquinolones and one of Amikacin, Kanamycin, Capreomycin
Mycobacterium avium-intracellulare
Treatment
- Must determine if disease actually present or part of environmental contamination
-
Triple therapy for newly dx patients ⇒ administered 3x/week and 12 months after last negative culture
(Put your MAC to REM sleep)- Rifampin
- Ethambutol
- Macrolide ⇒ charithromycin or azithromycin
- Azithromycin used for prophylaxis in immunocompromised pts
Mycobacterium leprae
Treatment
- ↓ Prevalence worldwide since WHO provided free multidrug therapy
-
Therapy depends on severity of disease
-
Tuberculoid leprosy (paucibacillary)
- Bacterial burden low
- Only 2 drugs recommended
- Dapsone
- Rifampin
-
Lepromatous leprosy
- Most severe form
- Requires 3 drugs
- Dapsone
- Rifampin
- Clofazimine (orphan drug)
- Treatment is for 2-5 years
-
Tuberculoid leprosy (paucibacillary)
Dapsone
Indications
Used primarily to treat leprosy.
May be used for other indications.
Dapsone
MOA
- Competitive ⊗ of dihydropteroate synthase
- Analogue of para-aminobenzoic acid
- Similar to sulphonamides ⇒ wide spectrum of activities
- Antibacterial
- Antiprotozoal
- Antifungal
Dapsone
Metabolism
- Retained up to 3 weeks in skin, muscle, and esp. liver & kidney
- Primarily metabolized in the liver
- 70-85% slowly excreted in urine
- Enterohepatic recirculation of free drug prolongs half-life
Dapsone
Adverse Effects
- Severe hemolysis in pts with G6PD deficiency
- Skin rashes
- Reversible peripheral neuropathy
- Blurred vision
Mycobacteria Drugs
Summary
