Unit 3.4 - Microbiology Flashcards
What is microbiology?
The study of microorganisms including prokaryotes (bacteria and archaea), protoctists, fungi and viruses
Which element of microbiology does the A level course mostly focus on?
Bactria
Examples of protoctists
Amoeba
Macroalga (seaweed)
Paramecium
Slime mole
(There’s a large variety)
What are amoeba and paramecium examples of?
Protoctists
How come fungi are involved in microbioloy?
Although they appear to behave like multicellular organisms in mushrooms and toadstools, the individual cells can live as single celled organisms
How do viruses reproduce?
By taking over host cells
What are viruses the borderline between?
Living organisms and complex chemicals like proteins
What can be though of as the borderline between living organisms and complex chemicals like proteins?
Viruses
Are viruses fully functioning living organisms?
No - more of a borderline between living organisms and complex chemicals (e.g - proteins)
Examples of prokaryotes
Bacteria
Archaea
Size of a prokaryotic cell
0.5 - 10 micrometres
Ribosomes in prokaryotic cells
70s
2 types of circular DNA in prokaryotic cells
Plasmids
Nucleoid
What does the cell wall of prokaryotic cells contain?
Peptidoglycan
Why do all prokaryotic cells have cell walls? Explain
They live in water-filled environments
The water potential of the cell is lower than the external water potential
Water diffuses in via osmosis
The cell wall avoids the lysis of the cell (stops it from bursting)
What would happen to prokaryotic cells if they didn’t have their peptidoglycan cell walls? Why?
They would burst (lyse) due to water diffusing in via osmosis from their environment
How do some antibiotics work because of the structure of prokaryotic cells?
They prevent the cell wall from working properly so that the cell cannot stand the pressure of the water diffusing in from its environment and bursts
What does the capsule of a prokaryotic cell do?
Protects the cell from chemicals and enzymes
What are the pilus of prokaryoties?
Tubular protein molecules
What do pili (more than 1 pilus) allow prokaryotic cells to do?
Allow cells next to each other to connect so that plasmids can move from 1 cell to the next
Plasmids
Circular DNA in prokaryotic cells that’s separate to the main chromosomal DNA
What can be transferred from one prokaryotic cell to another using pili?
Plasmids
Multiple pilus
Pili
What do plasmids allow prokaryotic cells to do?
Pass genes on plasmids from one cell to another without reproducing
How do prokaryotic cells pass on genes from one cell to another without reproducing?
Using plasmids
How are antibiotic resistance genes spread throughout a population of prokaryotic cells?
Using plasmids, which can be passed from one cell to another without reproducing
Mesosome
Infolding of the cell membrane
What are mesosomes in prokaryotic cells similar to in eukaryotic cells?
Similar to cristae in mitochondria
Where is the site of aerobic respiration in bacterial cells?
Mesosome
What is the mesosome of a prokaryotic cell useful for?
Is the site of aerobic respiration in bacterial cells
What does the flagellum of a prokaryotic cell do?
Rotates from a protein in the membrane to provide movement
Motile bacteria
Bacteria that can move on its own
Bacteria that can move on its own
Motile bacteria
Compare the differences between eukaryotic and prokaryotic cells
(Eukaryotic first each time)
Larger cells
80s larger ribosomes bound to the rough endoplasmic reticulum, 70s smaller ribosomes, free in the cytoplasm
Membrane bound organelles, no membrane bound organelles
DNA contained to the nucleus and is linear, DNA free in the cytoplasm and is circular
Nucleus has a double membrane, no nuclear envelope (double membrane(
No plasmids, plasmids
Cell wall (when present) is composed of cellulose or chitin, cell wall is composed of peptidoglycan (mucopolysaccharide)
Mitochondria are used for aerobic respiration (no mesosome), no mitochondria, uses a mesosome for aerobic respiration
DNA associated with histones, DNA not associated with histones
Ribosomes in eukaryotic cells
80s
Ribosomes in prokaryotic cells
70s
DNA in eukaryotic cells
Contained to the nucleus + linear
DNA in prokaryotic cells
Free in the cytoplasm + circular
Cell wall in eukaryotic cells
(When present) is composed of cellulose or chitin
Cell wall in prokaryotic cells
Composed of peptidoglycan (mucopolysaccharide)
What’s used for aerobic respiration in prokaryotic cells?
A mesosome
Similarities between prokaryotic cells and eukaryotic cells
Both contain ribosomes, cell membranes, DNA and genetic material
How can we identify different types of bacteria?
From their shapes
Rod shaped bacteria
Bacillus
Bacillus bacteria shape
Rod shapes
Examples of bacillus bacteria
Escherichia coli (E.Coli)
Salmonella
What can both of the bacillus bacteria E.Coli and Salmonella cause?
Food poisoning
Pathogen
An organism that can produce disease
Describe the bacillus bacteria salmonella
Pathogenic
Is all bacteria pathogenic? Give an example
No
Although E.Coli can be pathogenic, there’s already some in our intestine which isn’t pathogenic
Sphere shaped bacteria
Cocci
Cocci bacteria shape
Sphere shaped
Example of cocci bacteria
Staphylococcus aureus
Example of a staphylococcus aureus bacteria and explain why it’s problematic
MRSA
Is resistant to most of antibiotics, making it very difficult to treat (only 2 antibiotics are effective, and they have bad side effects)
What do the different arrangements of cocci depend on?
The species of the coccus bacteria
What are the 2 less common types of bacteria?
Vibrio
Spirillum
Comma shapes bacteria
Vibrio
Vibrio bacteria shape
Comma shaped
Example of vibrio bacteria
Vibrio cholerae
What is vibrio cholerae and how is it caused?
Cholera, caused by drinking contaminated drinking water
Spiral shapes bacteria
Spirillum
What shape is spirillum bacteria?
Spiral shaped
Example of a spirillum bacteria and what it causes
Leptospira, which causes Weil’s disease
How is Weil’s disease obtained?
By drinking water contaminated with rat urine
What is Gram’s stain?
A technique used in microbiology to help with the identification of bacteria
What does using the gram’s stain process to identify bacteria rely on?
The fact that bacteria have 2 basic cell wall structures, one of which retains a crystal violet stain and the other of which does not
What can bacteria be divided into using their basic cell wall structures?
Gram positive
Gram negatives
What colour do gram positives appear at the end of gram’s stain?
Purple
What colour do gram negatives appear at the end of gram’s stain?
Red/pink
Procedure for gram’s stain
1.) place the bacterial sample on a glass microscope slide
2.) stain with crystal violet (purple dye)
3.) apply iodine to fix the stain (iodine = a mordant)
4.) alcohol wash to decolorize
5.) stain with a a counter-stain —> safranin (red)
What is iodine?
A mordant
Purpose of the alcohol wash in the gram’s stain technique
To decolorize
Counterstain in the gram’s stain technique
Safranin
Colour of the safranin counterstain
Red
Cell walls of gram-positive bacteria
Simple cell walls, composed mainly of peptidoglycan
Cell walls of gram-negative bacteria
More complex cell walls which have an outer lipopolysaccharide membrane
What does crystal violet do to gram-positive bacteria?
Stains all cells purple
What does crystal violet do to gram-negative bacteria?
Stains all cells purple
What does iodine do with gram-positive bacteria?
Forms cross bridges with peptidoglycan and binds the crystal violet to the cell wall
What does iodine do with gram negative bacteria?
Doesn’t bond to the cell wall upon the addition of iodine. The lipopolysaccharide membrane prevents this.
What does alcohol do to gram-positive bacteria?
Doesn’t wash out the crystal violet as it’s binded to the cell wall
What does alcohol do to gram-negative bacteria?
Washes out any unbound crystal violet from the cell walls
What does the safranin counter-stain do to gram-positive bacteria?
Has no effect
What does the safranin counter-stain do to gram-negative bacteria?
Unstained cells are stained red/pink by the safranin
What’s different about the cell walls of gram-negative bacteria to gram-positive bacteria?
Gram-positive —> composed mainly of peptidoglycan
Gram-negative —> an outer lipopolysaccharide membrane
Why doesn’t crystal violet bond to the cell wall upon the addition of iodine in gram-negative bacteria?
The lipopolysaccharide membrane prevents it
What can the lipopolysaccharide layer in cells do?
Protect it from antibiotics
Culturing
Growing bacteria in a laboratory to form a bacterial culture
What do we used for culturing micro organisms?
Culture media
Solid culture medium
Agar plates
What are liquid culture media in?
In flasks
How do we prepare agar plates?
1.) Heat until liquid
2.) Mix in nutrients that bacteria needs
3.) pour into petri dished when hot
What is agar derived from?
Seaweed
How do we grow bacteria on agar?
1.) spread sample on surface
2.) dots appear after incubation
3.) form colonies