Unit 1.5 - Nucleic Acids and their functions Flashcards
Give 3 examples of Nucleic acids
Deoxyribonucleic acid
Ribonucleic acid
ATP
What are Deoxyribonucleic acid, Ribonucleic acid and ATP all?
Nucleic acids
What are all nucleic acids formed from?
Nucleotides
What to nucleotides form?
Nucleic acids
What’s the basic unit of nucleic acids?
Nucleotides
What are all the different sections on a nucleotide?
Phosphate
Organic base/nitrogenous base
Pentose sugar
What do Phosphate, Organic base/nitrogenous base and Pentose sugar all make up?
Nucleotides
Name of the base on a nucleotide
Organic or nitrogenous
What does ATP stand for?
Adenosine triphosphate
What’s the organic/nitrogenous base on ATP?
Adenine
What’s the Pentose sugar on ATP?
Ribose
What’s the phosphate on ATP?
Triphosphate (3 phosphate groups)
What type of bonds are between the phosphate groups on ATP?
High energy bonds
What are high energy bonds in ATP?
The bonds between the phosphate groups
What is adenine in ATP?
Organic/nitrogenous base
What is ribose in ATP?
Pentose sugar
Does ATP form polymers? (+explanation)
No - it’s a single nucleotide
What’s the only part of a nucleotide that has nitrogen atoms?
The base
What can vary with a nucleotide?
The organic base
Which element does the organic base of a nucleotide contain that isn’t in any other part of it?
Nitrogen
Do nucleotides form polymers?
Yes - like DNA and RNA
Give examples of polymers formed by nucleotides
DNA and RNA
What is ATP known as?
The universal energy currency of the cell
What is known as the universal energy currency of the cell?
ATP
Which process is ATP used in?
All processes requiring energy in all reactions in all living organisms
What is used in all processes requiring energy in all reactions in all living organisms?
ATP
Is there a living organism that doesn’t use ATP as the main energy transport system in the cell and why?
No - a cell would quickly die without a constant supply
Give 4 examples of cellular activities which use ATP
Protein synthesis
Active transport
DNA replication
Cell division
What do the following processes all use?
Protein synthesis, Active transport, DNA replication, Cell division
ATP
How is energy released from ATP?
By hydrolysing the bond between the last two phosphate groups in the molecule
Which bond is hydrolysed in order to release energy from ATP?
The bond between the last two phosphate groups in the molecule
What does hydrolysing the bond between the last two phosphate groups in a molecule do?
Releases energy from ATP
Equation for hydrolysing ATP
ATP + H20 —> ADP + Pi + H+
<—
What’s the approximate energy released when bonds are broken in ATP?
-30.6 kjmol-1
What type of reaction is it when bonds are broken in ATP? Why?
Exergonic as energy is released
What IS the energy released when breaking bonds in ATP?
Energy available for processes
Which products do we receive from hydrolysing ATP?
Adenosine diphosphate (ADP)
Inorganic phosphate (Pi)
Inorganic phosphate formed from hydrolysing ATP symbol
Pi
Pi
Inorganic phosphate formed from hydrolysing ATP
When does ADP form?
From hydrolysing ATP
Describe the ATP cycle
—> ATP —> energy for cellular work —> ADP + P —> Energy from respiration —>…
Phosphorylation
Adding a phosphate group
Adding a phosphate group
Phosphorylation
Which process is ATP made through?
Phosphorylation
Energy from metabolism to make ATP in humans
Break down of glucose using respiration
Energy from metabolism to make ATP in plants
Photons of light exciting electrons during photosynthesis
What does respiration and photosynthesis do?
Gives energy to form ATP
How much ATP do we use per day?
40kg
How much ATP is there at one point within our cells?
5g
Do we store ATP?
Nope
Why is there no need for us to store ATP?
It’s cycled, so the ATP is constantly remade and reused
Due to the process of making and using ATP being cycles, what is there no need for us to do?
Store it
Advantages of ATP
-Hydrolysis of ATP to ADP involved a single reaction that releases immediate energy
-Soluble and easily transported
-Only one enzyme (ATPase) is needed to release energy from ATP
-ATP releases energy in small amounts when and where needed
-ATP provides a common source of energy for many different chemical reactions (increases efficiency and control by the cell, the universal intermediary molecule between energy-yielding and energy-requiring reactions in the cell)
Example of ATP being soluble and easily transported
From companion cell to sieve element in Phoelem
Wha’t’s the only enzyme needed to release energy from ATP?
ATPase
How is ATP better than glucose in terms of the amount of reactions required to release energy?
ATP = a single reaction that releases immediate energy
Glucose = breakdown involves a number of intermediates and it takes much longer for energy to be released
How is ATP better than glucose in terms of the amount of energy released?
ATP = releases energy in small amounts when and where needed
Glucose = contains large amount of energy that may not be needed immediately
How is ATP better than glucose in terms of the enzymes needed to release energy?
ATP = only one enzyme needed to release energy (ATPase)
Glucose = requires many enzymes
What does DNA stand for?
Deoxyribonucleic acid
Made is the structure of DNA made up of?
Nulceotides, each including a Pentose deoxyribose sugar
What type of sugar do the nucleotides in DNA include?
Pentose deoxyribose sugar
What forms the backbone of DNA strands?
Nucleotides hooked together to make a sugar-phosphate backbone for each DNA strand
What do nucleotide units form in DNA?
Polymers known as the sugar-phosphate backbone
What happens for complementary base pairing in the DNA?
Adenine to Thymine
Cytosine to Guanine
What do Adenine, Thymine, Cytosine and Guanine all include?
Nitrogen
What is nitrogen included in all of?
The bases in DNA
What do the sequences of bases form in the DNA?
The genetic code
What forms the genetic code in the DNA?
The sequences of bases
Which type of bond is between Adenine and Thymine and how many?
2 hydrogen bonds
Which type of bond is between Cytosine and Guanine and how many?
3 hydrogen bonds
What two bases in the DNA have 1 hydrogen bonds between them?
Adenine and Thymine
Which two bases in the DNA have 3 hydrogen bonds between them?
Cytosine and guanine
Draw the structure of DNA
(Check notes)
What are different monomer units in the DNA joined by? What does this do?
A bond between the sugar and the phosphate of the next nucleotide, which forms the DNA molecule’s backbone
What maintains the DNA’s double helix shape?
Weak hydrogen bonds
What do weak hydrogen bonds maintain?
The double helix shape of the DNA
What are two strands of DNA linked together by?
Weak hydrogen bonds
How is the double helix shape of the DNA formed?
2 strands of DNA are linked together by weak hydrogen bonds and stacked like a ladder who’s sides spiral around each other into their double helix shape
Describe the polynucleotide chains/strands in DNA
Are anti-parallel to each other (running in opposite directions - 1 chain facing up, 1 chain facing down)
What are anti-parallel to each other in the DNA?
Polynucleotide chains/strands
How many nucleotide units does each polynucleotide chain in the DNA chain contain?
Many million (in pairs)
What do you call the chains of nucleotides joined together in the DNA?
Polynucleotide chains/strands
What can contain many million nucleotide units in pairs?
Each polynucleotide chain/strand
Name 4 scientists responsible for helping solve the structure of DNA
Erwin Chargaff
Rosalind Franklin
Watson & Crick
What were Erwin Chargaff, Rosalind Franklin and Watson & Crick all responsible for?
Helping solve the structure of DNA
What did Erwin Chargaff uncover?
% of Adenine = % of Thymine
% of Guanine = % of Cytosine
(Chargaff’s rule)
What is Chargaff’s rule?
% of Adenine = % of Thymine
% of Guanine = % of Cytosine
What did Rosalind Franklin do?
Shot X-ray beams at DNA samples and hypothesised a spiral structure
Who shot x-ray beams at DNA samples and hypothesised a spiral structure?
Rosalind Franklin
What do scientists do to uncover big things?
Use each other’s work
What did Watson and Crick do?
Used franklin’s x-ray pictures to build a model of DNA
Who used Franklin’s x-ray pictures to build a model of DNA?
Watson & Crick
What two things does Chargaff’s rule state?
% of Adenine = % of Thymine
% of Guanine = % of Cytosine
And
Ratio of purine to pyrimidine bases in DNA must always be 1:1
Describe purine bases
Double ring structure
Which bases have a double ring structure?
Purine bases
Describe pyramidine bases
Single ring stucture
Which bases have a single ring structure?
Pyrimidines
What connects adenine and thymine/ guanine and cytosine?
Hydrogen bonds
Name the purine bases
Adenine and guanine
Name the pyrimidine bases
Thymine and cytosine
What type of bases are adenine and guanine?
Purine
What type of bases are thymine and cytosine?
Pyrimidines
How do we remember which bases are Pyrimidines?
Thymine and cytosine have a “y” in them, like the word “pyrimidine”
What does adenine form a bond with?
Thymine OR uracil
What does uracil form bonds with?
Adenine
How many bonds are between adenine and thymine/uracil?
2 hydrogen bonds
How many bonds are between cytosine and guanine?
3 hydrogen bonds
Which bases form two hydrogen bonds?
Adenine with thymine/uracil
Which bases form 3 hydrogen bonds?
Cytosine with guanine
What does RNA stand for?
Ribonucleic acid
What is RNA?
A single stranded polynucleotide
Which type of nucleic acid is a single stranded polynucleotide?
RNA
Which Pentose sugar does RNA contain?
Ribose
Which nucleic acid containers the Pentose sugar ribose?
ATP and RNA
What type of bases are adenine, guanine, cytosine, thymine and uracil?
Organic bases
Which organic bases does RNA include?
Adenine, guanine, cytosine and uracil (no thymine)
Draw the difference between DNA and RNA
(Check notes)
What do the nucleotide units form in RNA?
A polymer
What forms a polymer in RNA?
Nucleotide units
Which is shortest - DNA or RNA?
RNA is much shorter than DNA
What are the three types of RNA?
mRNA - messenger
tRNA - transfer
rRNA - ribosomal
Compare DNA and RNA
(DNA first in the list each time, then RNA)
Deoxibose sugar v.s ribose sugar
Thymine v.s uracil
Double helix v.s single stranded
One type v.s 3 types (mRNA, tRNA and rRNA)
In the nucleus, mitochondria and chloroplasts v.s in the nucleus, cytoplasm and ribosomes
What’s the difference between the structure of DNA and RNA?
DNA lacks the OH- group at carbon no.2
Where is DNA found?
In the nucleus, mitochondria and chloroplasts
Where is RNA found?
In the nucleus, cytoplasm and ribosomes
What are both DNA and RNA?
Polynucleotide chains
What do mRNA, tRNA and mRNA all play a role in?
Protein synthesis
What is DNA’s role?
-Carries the code for protein synthesis
-structure of the protein is down to the DNA deciding the order the amino acids are in the polypeptide chain to form a code
How is the structure of a protein decided?
The DNA decided the order the amino acids are in the polypeptide chain to form a code
What must happen before cell division?
All of the DNA in the cell must be copied so that there’s a copy of each gene for both new cells (DNA replication)
DNA replication
Copying all of the DNA in a cell so that there’s a copy of each gene in both new cells after division
What’s the name for all of the DNA in a cell being copied so that there’s a copy of each gene in each new cell?
DNA replication
Why must DNA be copied in the cell before cell division?
So that there’s a copy of each gene for both new cells
How can we ensure that there’s a copy of each gene in both new cells following cell division?
DNA replication
The first step of cell division
The interphase - DNA is copied
What’s the interphase during cell division?
The first step, where DNA is copied
What’s the second step of cell division?
Mitosis, where the DNA is split equally into two daughter cells
Mitosis
Where DNA is split equally into 2 daughter cells
What’s the final step of cell division?
Cytokinesis, where the parent cell is cleaved in half
Cytokinesis
Where a parent cell is cleaved in half
What’s the name of the process where a parent cell is cleaved in half?
Cytokinesis
How is DNA stored in the cell?
Wrapped around histone protein molecules
Chromatin
Histone protein molecules packed together to form fibres, held in the nucleus
Histone protein molecules packed together to form fibres, held in the nucleus
Chromatin
How are chromosomes formed?
The thread-like structure of chromatin packs itself in tightly to form chromosomes when a cell starts to divide
What packs itself in tightly to form chromosomes?
Chromatin
What does chromatin packing itself in tightly form? When?
Chromosomes, when a cell starts to divide
Describe the structure of chromatin
Thread-like
Chromatid
A copy of the duplicated chromosome, which is generally joined to the other by a centromere
A copy of the duplicated chromosome, which is generally joined to the other by a centromere
Chromatid
What are chromatids joined together by and what does this form?
A centromere
A chromosome
Draw and label a chromosome
(Check notes)
What’s the reason for condensing DNA into chromosomes?
Prevents DNA tangling and damage during cell division
How is DNA tangling and damage prevented during cell division?
DNA is condensed into chromosomes
What’s the name of the process DNA uses for its replication?
Semi-conservative replication
Semi-conservative replication
The process DNA uses for its replication
Why is it called “semi-conservative replication”?
Half of the old molecule is kept
Describe semi-conservative replication in simple terms
1.Old molecule
2.Two polynucleotide strands unzip (hydrogen bonds break 1 by 1 down the strand) and new bases are added
3.Two new molecules are created, each containing 1/2 the original molecule
Describe the polynucleotide strands during DNA replication
Complementary
How do polynucleotide chains unzip during DNA replication?
Unzip, as hydrogen bonds break 1 by 1 down the strand
What do the hydrogen bonds breaking 1 by 1 occur during semi-conservative replication?
The polynucleotide chain to unzip
How many new molecules are created via semi-conservative replication?
2
What’s the name of the time where DNA replication happens before mitosis or meiosis?
Interphase
Interphase
The space of time when DNA replication occurs, before mitosis or meiosis
Where is 5’ labelled on the DNA structure?
Outside of the sugar’s structure
Where is 1’ labelled on a DNA’s structure?
First one clockwise from the oxygen (closest to the base)
Describe the strands of DNA
Anti-parallel - they run parallel to each other but in opposite directions
In which direction is DNA always synthesised?
5’-to3’ direction
What’s the 5’-to-3’ direction always required for?
Protein synthesis
Which end of the polynucleotide chain are nucleotides only ever added to?
The 3’ end of the growing strand
What binds to what in order to grow a polynucleotide strand?
5’ phosphate group of the new nucleotide binds to the 3’ OH group of the last nucleotide in the growing strand
What binds to the OH group on the last nucleotide in a polynucleotide chain and where?
5’ phosphate group at the 3’ OH group
What does the 5’ phosphate group bind to, where and to do what?
The 3’ OH group of the last nucleotide in the growing strand to form a polynucleotide
What’s the name of the original molecule that’s split into 2 other strands during DNA replication?
Parental DNA
Which two strands does the parental molecule split into during DNA replication?
Leading strand
Lagging strand
What’s the name of the shape formed during DNA replication?
Replication fork
Parental DNA
Original molecule for DNA replication
Replication fork
The shape produced during DNA replication
When does DNA replication occur?
During interphase - a phase in cell cycle between divisions
Interphase
A phase in cell cycle between divisions
What does helicase do?
Causes the parental DNA to unzip by breaking hydrogen bonds that expose the bases
Which enzyme is responsible for unzipping the parental DNA by breaking its hydrogen bonds?
Helicase
What type of bonds does helicase break when unzipping the parental DNA?
Hydrogen bonds
Where does helicase work?
In the replication fork
What does polymerase do?
Joins new, free nucleotides to their complementary bases to build a new DNA strand, by catalysing the formation of phosphodiester bonds between deoxyribose and phosphate groups
Which enzyme joins new, free nucleotides to their complementary bases?
Polymerase