Unit 2.1 - All organisms are related through their evolutionary history Flashcards
What do ALL organisms one from and when?
A common ancestor, billions of years ago
What does the way organisms are named reflect?
That they all came from a common ancestor billions of years ago
Taxonomy
The branch of science concerned with classification
The branch of science concerned with classification
Taxonomy
Phylogenetic
Methods of classification that reflect an organism’s evolutionary history
Phylogenetic
Evolutionary relatedness
Evolutionary relatedness
Phylogenetic
What are grouped together under phylogenetic classification?
Closely related organisms
What does it mean if organisms are in the same group?
More recent common ancestor, and may show physical similarities
Who and when does the system of classification we now use originate from?
Carl Linnaeus in the 18th century
What type of methods of classification reflect on an organism’s evolutionary history?
Phylogenetic methods of classification
Taxa
Levels of classification
Levels of classification
Taxa
What so large Taxa contain?
Smaller taxonomic groups
What contains smaller taxonomic groups?
Large Taxa
Whats the pattern in relatedness of organisms in terms of the taxonomic groups?
Animals become more related as you move down the taxonomic groups
What happens to organisms as you move down the taxonomic groups?
They become more closely related
Largest taxonomic group
Domain
Smallest taxonomic group
Species
List the taxonomic groups
Domain
Kingdom
Phylum
Class
Order
Family
Genus
Species
List the taxonomic groups of humans from top to bottom
Domain - eukaryotes
Kingdom - animalia
Phylum - Chordata
Class - mammalian
Order - primates
Family - hominidae
Genus - homo
Species - sapiens
Back bone phylum
Cordata
Cordata
Back bone phylum
Can an animal belong to more than 1 taxon at any level? What’s the word for this?
No - Taxa are discrete
What do you call the diagrams frequently used to show the genetic relatedness of species?
Phylogenetic trees
What does the point at which 2 species cross over on a phylogenetic tree represent?
A common ancestor for 2 organisms
What represent a common ancestor for 2 organisms?
The point where the points cross on a phylogenetic tree
What does it mean if 2 species evolved more recently from another organism?
More closely related and therefore share a lot more of the same DNA
What do organisms that are closely related share a lot of?
The same DNA
What did we depend on in the past for classification?
Comparative anatomy
What do we depend on now for classification and why?
Biochemical, DNA comparisons
More reliable
Why is the fact that DNA is shred between closely related species a useful fact for classification of previously Iiving organisms?
We’re able to extract DNA from old archeological samples
Why are we able to extract DNA from old archeological samples?
It remains stable due to its structure, so it remains in good condition for thousands of years
What does more time passing usually mean in terms of DNA?
More time for DNA to change = more changes
What do genes change via during evolution?
Via mutation and natural selection
Why do genes change during evolution?
Evolutionary pressures were different in new environments
What do ALL living species belong to 1 out of 3 possible groups?
1 out of 3 of the groups in the domain system
What was the domain system originally defined on the basis of?
rRNA base sequences
What is the domain system now defined on the basis of?
DNA base sequences
3 domains
Eubacteria
Archaea
Eukaryota
Description of eubacteria domain
Familiar bacteria (e.g - E. Coli, salmonella, strep A)
Prokaryotes
2 prokaryote domains
Eubacteria and archaea
Archaea domain description
Also bacteria, but often have unusual metabolism (e.g - generate methane)
Live in marginal (extreme) environments
Prokaryotes
Which domain lives in extreme environments and give examples of these?
Archaea
Frozen soil in the Antarctic
In geothermal springs
Eukaryota domain description
Included plantae, animalia, fungi and protoctista
Eukaryotes
Features of Eukaryota domain
Membrane bound organelles, DNA in a nucleus with a nuclear envelope..
What’s the kingdom system based on?
Morphological similarities between organisms, not DNA analysis
Which group is based n morphological similarities between organisms, not on DNA analysis?
Th kingdom system
Main features of the prokaryotae kingdom
Includes all bacteria (eubacteria and archaea) and Cyanobacteria
Microscopic, single called organisms with no membrane bound organelles
Cell wall made from pectidoglycan or Murein (not cellulose)
What are the 5 kingdoms?
Prokaryotae
Protoctista
Fungi
Plantae
Animalia
Protoctista kingdom main features
Eukaryotic organisms
Single celled
No tissue differentiation
(E.g - amoeba, paramecium, paracytes)
Fungi kingdom main features
Heterophobic eukaryotes
Cell wall made up of chitin
Reproduce by spores
Grow in long threads called hyphae (together = mycelium)
Plantae kingdom features
Multicellular eukaryotes
Photosynthetic
Cellulose cell walls
Animalia kingdom main features
Multicellular eukaryotes
Heterophobic
No cell wall
Nervous coordination
Which kingdom is known as the “dustbin group” and why?
Protoctista as it’s such a diverse group that anything that doesn’t fit into the others goes into
Heterophobic
Have to consume complex organic molecules made by other organisms (don’t photosynthesise)
Name 2 heterophobic kingdoms
Animalia and fungi
Differences between Plantae and fungi kingdoms
(Plantae first, then fungi)
Cellulose cell wall, chitin cell wall
Reproduce by seeds, reproduce by spores
Photosynthetic, heterophobic
Photosynthetic
Use energy from sunlight to make complex organic compounds (e.g - carbohydrates) from simple, inorganic molecules (CO2, H20)
Name a good piece of evidence for evolutionary relationships and give an example
The presence of homologous structures
e.g - the pentadactyl limb in vertebrates
What’s comparative anatomy evidence of?
Common ancestry
Homologous structures + example
Same evolutionary origin (common ancestor) but have very different functions
(e.g - the wing of a bat and the flipper of a whale)
Analogous structures + example
Different evolutionary origins but have similar biological functions
(e.g - the wing of a bird and the wing of an insect)
What type of evolution do homologous structures result from?
Divergent evolution
What type of structures does divergent evolution lead to?
Homologous structures
What do analogous structures result from?
Convergent evolution
What type of structures does convergent evolution result in?
Analogous
Divergent evolution
When a population is split in 2 by geographical barriers and develop different traits under their respective selective pressures
(Have a common ancestor)
Convergent evolution
Species from different evolutionary origins occupying similar adaptations to similar selective pressures
(Adapted separately from different starting points, but reach the same end point - converge)
Example of convergent evolution + explanation
Dolphins and sharks
Dolphins - evolved from land mammals
Sharks - evolved from fish
Similar body shapes, but would need to track back million of years to find a common ancestor
What are the 4 methods of indicating how closely relate species are?
- DNA base sequence
- DNA hybridisation
- Amino acid sequence
- Immunology
What happens to DNA base sequences during evolution?
Species undergo changes in their DNA base sequences, which accumulate until the organisms are so different that they’re considered to be different species
Relationship between relatedness and DNA base sequence
More closely related = more similar DNA base sequence
Which method has confirmed evolutionary relationships in the past and corrected mistakes made in classification based on physical appearances?
DNA base sequencing
DNA sequencing
Reading the sequence of bases in a DNA molecule
What occurs during DNA base sequencing and why?
Specific sequences of DNA are targeted (e.g - a specific gene)
We can then compare that gene between species
(Remember that DNA is extraordinarily long)
What’s the issue with DNA base sequencing of only one gene?
The data is not representative of the whole DNA and so 2 species could appear more closely related then they really are
What does DNA hybridisation involve?
Comparing the DNA base sequence of 2 species
Describe the stages of DNA hybridisation
- DNA is extracted from both species
- DNA is heated to separate the 2 strands
- DNA is cut into fragments
- Fragments from 2 species are mixed
- Where they have complementary base sequences, they hybridise together
What has to be done to get a result from DNA hybridisation and what is this result?
Has to be heated -
The higher the temperature required to separate the new hybrid DNA molecules, the more similar the DNA due to the hydrogen bonds formed
What does 1 degree Celsius difference in desaturation temperature for DNA hybdridisation result in?
1% difference in DNA sequence
Even though humans and chimpanzees have 95% of their DNA in common, they have huge differences in appearance and behaviour. Why?
Due to gene regulation between the 2 species
Gene regulation
A process used to control the timing, location and amount in which genes are released
How is amino aid sequencing done?
The sequence of amino acid sin protein is determined by the DNA base equence
The degree of similarity in amino acid sequence reflects how closely related 2 organisms are
Example of amino acid sequencing that’s led to evolutionary trees
Part of the fibrinogen molecule of various mammal species have been compared
Their differences have led to evolutionary trees
What’s the problem with observing the amino acid sequence to indicate how closely related species are?
Can have differences in the DNA sequence that don’t cause differences in the amino acid (different codons of amino acids)
(Not as sensitive as using the DNA base sequence)
What’s not as sensitive as using the DNA base sequence for indicating how closely related species are?
Using the amino acid sequence
What does immunology do?
Compare proteins of different species
Describe the process of immunology
Antigen of one species
+
Specific antibodies of another
Mixed
Form a precipitate
What would show a closer evolutionary relationship during immunology?
The antigen and antibody reacting more to make more precipitate
Example of an antigen used during immunology
Blood protein albumin
Why is biological classification said to have a “tentative nature”?
Classification can change over time as more techniques and information become available
What is a species defined as?
A group of organisms able to interbreed to produce fertile offspring
Which domain includes extremophiles?
Archaea
Extremophiles
Bacteria living in extreme environments
Examples of extreme environments that extremophiles can endure
Very high and very low temperatures (e.g - geothermal springs, frozen ice)
High salinity
Acidic + alkaline
High pressure
Extremophiles living in very high temperatures
Thermophiles
Extremophiles living in an area of high salinity
Halophiles
Extremophiles living in very low temperatures
Psychrophiles
What do you call the groups in which fungi grow?
Hyphae (together - mycelium)
Name the kingdoms with photosynthetic organisms
Prokaryotae
Plantae
Protoctista
What are the photosynthetic pigments of plantae attached to?
Thylakoids
Hierarchical
Each group is subdivided into smaller groups