Translation Flashcards

1
Q

Start codon

A

AUG

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2
Q

Stop codons

A

UAA, UGA, UAG

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3
Q

Steps of tRNA “charging”

A

Forms aminoacyl-AMP via hydrolysis
tRNA synthetases must only join each amino acid to the tRNA that has the anticodon needed for that amino acid

Requires ATP Hydrolysis

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4
Q

Inosine can base pair with

A

U,C,A

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5
Q

Wobble position

A

Third position (on 5’ end)

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6
Q

What does wobble position allow

A

Same amino acid can come from different codons

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7
Q

Ribosomes are

A

Large ribonucleoprotein complexes conatining several rRNAs and many proteins

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8
Q

Initation of translation

A

1) CBP (cap-binding protein) binds to 5’ Cap of mRNA
2) Small ribosomal unit interacts with CBP complexed with 5’ Cap
3) Small subunit scans until it finds AUG (Kozak sequence)

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9
Q

Important initiation factor for initiation of translation

A

eIF-2

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10
Q

4 antibiotics that target translation

A

Chloramphenicol
Erythromycin
Tetracyclines
Streptomycin

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11
Q

IRE

A

Iron responsive elements found on mRNA

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12
Q

IRE-binding protein

A

Binds to IRE

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13
Q

IRE-binding protein binding pattern

A

Iron-bound IRE-BP cannot bind to IRE

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14
Q

Ferritin function

A

Iron storage protein

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15
Q

Transferrin receptor

A

Cell membrane protein that brings Fe into the cell

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16
Q

Low/high iron ferritin

A

Low - IRE-binding protein binds to IRE so translation inhibited
High - IRE-binding protein cannot bind so translation proceeds

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17
Q

Low/high iron transferrin

A

Low - IRE-binding protein binds to IRE to prevent degradation
High - IRE-BP cannot bind so degradation of mRNA occurs

18
Q

HCI

A

Kinase inhibited by heme

Phosphorylates and inactivates eIF2, which decreases translation of mRNAs (including globin mRNAs)

19
Q

eIF2

A

When not phosphorylated, increases translation of globin proteins

20
Q

What rxn occurs to make disulfide bonds

A

Oxidation

O2—–H2O2

21
Q

Insulin generated form -_____ and example of _____

A

Proteolysis of proteins

Proinsulin (also produces C peptide)

22
Q

Digestive enzyme activation

A

Trypsinogen cleaved by enteropeptidase and trypsin into trypsin
Trypsin cleaves proelastase into elastase
Trypsin cleaves chymotrypsinogen into chymotrypsin

23
Q

2 paths to apoptosis and where they converge

A

Fas and mitochondrion

Both cleave procaspase 3

24
Q

Fas path to apoptosis

A

Fas receptor cleaves procaspase-8 into caspase 8…caspase 8 cleaves procaspase 3 into caspase 3…caspase 3 causes apoptosis

25
Q

Mitochondrial path to apoptosis

A

Mitochondrion forms apoptosome…procaspase 9 cleaved to caspase 9…cleaves procaspase 3 into caspase 3

26
Q

Clotting pathways converge ofn

A

Prothrombin

27
Q

Hemophilia A

A

Low factor 8

28
Q

Hemophilia B

A

Low factor 9

29
Q

Hemophilia symtoms

A

Prolonged bleeding and bruising easily

30
Q

Normal/alzheimer pathway of Abeta

A

alpha secretase

beta secretase

31
Q

Protein phosphorylation occurs of

A

Serine, threonine, and tyrosine side chains

32
Q

Phosphorylation regulates_______

A

The activities of proteins

33
Q

Histone acetylation occurs on

A

Specific lysine residues (histones)

34
Q

HAT/HDAC

A

HAT - Histone acetylation - opens the chromatin

HDAC - Histone deacetylation - silencing

35
Q

Cancer cells and HDAC

A

Cancer cells use HDAC to turn off tumor suppressor genes by causing HDAC to be recruited to promoter

36
Q

HDAC inhibitors used in

A

Cancers that suppress tumor suppressor genes

37
Q

2 HDAC inhibitors

A

Trichostatin A
Trapoxin
Just eliminate enough HDAC to allow cells to die when treated with other therapies

38
Q

p53 modification

A

Acetylated

39
Q

Valproic acid

A

HDAC1 inhibitor that works on p53

40
Q

Ubiquitination and when it happens

A

Targets proteins for degradation by protesosome

Damaged or regulated to degradation

41
Q

Ras associates with membranes by

A

Side chain of a cysteine near C-terminus is liken to farnesyl (lipid group) by farnesyl transferase

42
Q

FTI

A

Farnesyl transferase inhibitor - doesn’t allow attachment of farnesyl to Ras so therefore Ras cannot be incorporated into the membrane and cannot become active