The Human Microbiome Flashcards

1
Q

What is the human microbiome?

A

The community of bacteria that live in/on the human host.

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2
Q

Characteristics of germ free animals (5)

A

Live longer and have less diseases because they see less pathogens

Enlargement of caecum and have degenerate diseases of intestinal tract, because they don’t have the same microbes needed to grow

Germ free rats are vitamin deficient as microbes make vitamins

Under development of the immune system as microbes stimulate it

Increased rate of autoimmune disease

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3
Q

What diseases are associated with the population of the microbiome? (7)

A
Obesity
Inflammatory bowel disease
Chrohns disease
Cardiovascular disease
Vaginal infections
Eczema 
Asthma
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4
Q

Key concepts about the foetus (2)

A

Foetus has no microorganisms

Colonised by bacteria at birth canal then pick up bacteria from the vagina and then mouth

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5
Q

Where us bacteria found? (8)

A
Gastrointestinal tract (where most is)
Skin
Genitals
Urethra
External ear canal
External eye
Hair 
Respiratory tract
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6
Q

Where should bacteria not be found? (10)

A
Middle/inner ear
Heart
liver
Kidneys
Brain 
Spine
Muscles
Bones
Ovaries
Glands
Sinuses
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7
Q

What is it called when you have bacteria in your brain

A

Meningitis

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8
Q

What are 5 sterile body fluids

A
Blood
Urine in kidneys
Cerebrospinal fluid
Saliva (before mouth)
Amniotic fluid
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9
Q

Do we have more bacteria in us than cells?

A

Yes because 1.3 fold more bacteria found than cells

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10
Q

2 types of bacteria

A

Firmicutes

Bacteriodetes

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11
Q

Firmicutes (4)

A

Gram negative (2 cell walls)

Importance of ratio of bacteriodetes and firmicutes

Take simple sugars and make short chain fatty acids

Form spores

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12
Q

Bacteriodetes (6)

A

Form spores

Anaerobic Don’t need O2 (can be killed by it)

Gram negative

Break down carbs (by bacteria prevotella) and sugars

Lives in soil, seawater and animals

Some say can cause obesity

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13
Q

Effects of fermentation on dietary fibre by the microbiome

A

Bacteria in colon metabolise dietary fibre into oligosaccharides (cell recognition and binding), and monosaccharides (made into short chain fatty acids and absorbed by colonic epithelial cells to make them healthier).

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14
Q

Verrucomicrobia

A

Beneficial bacteria that treats cancer by blocking ‘check point’ on immune alleles and stop cancer. It works on 1/4 people.

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15
Q

What is the link between asthma and antibiotics?

A

Children given antibiotics at a young age will be more likely to get asthma

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16
Q

How to identify a microbiome

A

Sequence all microbial DNA and identify all microbial species

17
Q

What is metagenomics

A

Culture dependent study of genomes of many organisms simultaneously

Eg human microbiome project

18
Q

Human microbiome project results

A

The amount of firmicutes and bacteriodetes vary with diet and differ in each area of the body.

19
Q

Define commensial bacteria

A

Symbiosis that benefits bacteria and doesn’t harm the host. Most are anaerobes.

20
Q

Define microbiota

A

Community of microbial organisms that inhabit a body site

21
Q

Define dysbiosis

A

Changing the microbiome in comparison with a healthy state