Proteins Flashcards

1
Q

What is the primary structure?

A

Amino acid sequence

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2
Q

What is the secondary structure?

A

α helixes, beta sheets, beta turns

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3
Q

What is the tertiary structure?

A

3D shape

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4
Q

What is the quaternary structure?

A

Protein forms complexes with other proteins

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5
Q

What are proteins made up of?

A

Polypeptide chains

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6
Q

What are the 6 functions of proteins?

A
Enzymes 
Signalling 
Transport 
Antibodies 
Structural 
Transcription factors
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7
Q

What do enzymes do?

A

catalyse chemical reactions

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8
Q

What is signalling?

A

Required for information processing within cells

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9
Q

What is a proteins function determined by?

A

It’s structure

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10
Q

Explain the example of the Ras protein?

A

It is a signalling enzyme called GTPase
It converts GTP (on) to GDP (off)
The active site of GTPase binds to GTP and Mg2+

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11
Q

Which techniques can you use for protein purification?

A
  • Ultracentrifugation
  • Gel filtration chromatography
  • Ion-exchange chromatography
  • Affinity chromatography
  • Gel electrophoresis
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12
Q

What is ultracentrifuation?

A

Seperates biological macromolecules based on their relative buoyancy by spinning them at high speeds

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13
Q

What are proteins separated by in gel filtration chromatography?

A

Seperated on the basis of their size

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14
Q

How does gel-filtration chromatography work?

A

The protein mixture is run through a column contatining beads of a hydrophilic polymer
Large proteins do not enter the pores in the beads and so pass through quickly
Smaller proteins pass through the beads and so run much more slowly

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15
Q

What are proteins separated by in affinity chromatography?

A

Separated on the basis of a specific interaction with another molecule bound to a column of beads

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16
Q

How does affinity chromatography work?

A

Proteins that interact stick to the beads, others do not and are washed off.
Purified protein is then released from the column

17
Q

What are proteins separated by in ion exchange chromatography?

A

Separated on the basis of their net charge by exchange chromatography

18
Q

How does ion exchange chromatography work?

A

Proteins with a net positive charge bind to a column of beads containing carboxylate groups (negatively charged proteins do not)

19
Q

In ion exchange chromatography, what are the proteins eluted with?

A

Increasing concentrations of sodium chloride solution

20
Q

In ion exchange chromatography, which proteins elute first?

A

Least charge elute first

21
Q

In ion exchange chromatography, which proteins elute last?

A

Highly charged proteins

22
Q

What is electrophoresis?

A

Charged molecules moving in an electric field

23
Q

What does the velocity of migration depend on?

A

Field strength
Net charge on the protein
Radius of the sphere
Viscosity of the medium

24
Q

What medium is used in gel electrophoresis?

A

PolyAcrylamide Gel

25
Q

What can gel electrophoresis be used to separate?

A

DNA
RNA
Proteins

26
Q

Which proteins are the slowest in gel electrophoresis?

A

Larger proteins