Microbiology: Viruses and Subviral particles Flashcards

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1
Q

What kind of characteristics do gut bacteria have

A

Obligate anaerobes (do not require O2)

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2
Q

conjugation can occur between bacterial cells of what status ?

A

from F+ to F-

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3
Q

What mechanism do bacteria use to reproduce ?

A

Binary fission

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4
Q

what viral component is only derived from animal cells ?

A

Envelope

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5
Q

What kind of RNA does RNA Polymerase I transcribe?

A

rRNA

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6
Q

Which polymerase can alter chaperone proteins?

A

RNA polymerase II

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7
Q

What happens during the proviral stage of a virus?

A

During the proviral stage, the viral genome is integrated with the host genome and passive replication of genome occurs.

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8
Q

What is the use of ELISA (Enzyme-linked immunoabsorbent Assay) ?

A

ELISA: are the quickest and easiest way to test for the presence of an antibody in a patient’s serum

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9
Q

What occurs during provirus excision ?

A

When the provirus leaves the host genome (excises), it can leave behind some viral DNA, or it can take some extra host DNA, altering the viral genome.

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10
Q

What aspect of retroviruses allows them to develop drug resistance so readily ?

A

-Reliance of reverse transcriptase
Reverse transcriptase (RT) is also known as( RNA-dependant DNA polymerase)
** RT does not have any proofreading mechanism. Thus, many errors occur during the creation of DNA from the viral RNA
this allows for slight variations in protein structure in viable viruses, rendering anti-retroviral drugs ineffective. **

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11
Q

What are the main goals of vaccines?

A

(1) the vaccine must not cause the disease it is trying to protect against,
(2) the vaccine must be effective in protecting the individual against the disease.

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12
Q

Explain why RNA genomes are smaller than DNA genomes

A

RNA genomes are smaller b/c RNA polymerases cannot proofread, while DNA polymerases can.
Hence it is better to keep RNA genome small, and incorporate fewer errors

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13
Q

What stage of virus can antibodies block ?

A

At the INFECTION stage, the virus is still extracellular, so this is the stage at which antibodies are effective

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14
Q

What stages can antibodies not block in viral process?

A

intracellular stages: Viral replication, release of new particles, and synthesis of new particles
Antibodies are found in the plasma and extracellular fluids and are not available to the intracellular environment.
Therefore, any process that occurs intracellularly cannot be blocked by antibodies.

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15
Q

Do viruses have translation machinery?

A

NO they do not have translation machinery and must borrow form their host cell

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16
Q

Which part of proteins is most accessible to antibodies ?

A

The glycosylated part since antibodies are located on extracellular side of protein and that part is glycosylated

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17
Q

Differentiate between obligate anaerobe and tolerant anaerobe

A

obligate anaerobe: bacteria will only grow in Absence of oxygen
tolerant anaerobe: while bacteria do NOT use oxygen, they can still grow in presence of oxygen

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18
Q

What occurs in bacterial conjugation ?

A

Conjugation occurs when an F+ “male” bacterium builds a conjugation bridge to an F– “female” bacterium in order to transfer DNA from male to female.
- Often this is just plasmid DNA (the F plasmid), but bacterial genome can also be used.
- At the end of conjugation, the F– “female”, having received the F plasmid, is now an F+ “male” (F- turns into F+ )

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19
Q

What is an Autotroph?

A

An organism that can make its own food using carbon dioxide, water or the chemicals

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20
Q

What are exotoxins ?

A

Exotoxins are toxic substances that are secreted by both Gram-negative (thin cell wall) and Gram-positive bacteria (thick cell wall), and are often very important factors in infection.

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21
Q

Differentiate between Gram negative and gram positive bacteria ?

A

Gram positive (thick peptidogylcan cell wall) stain purple

Gram negative: thin cell wall (stain pink) have outer and inner membrane

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22
Q

How does methicillin function ?

A

It is true that methicillin functions to inhibit the transpeptidase enzyme used by bacteria to cross-link the peptides in the cell wall.

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23
Q

differentiate between prokaryotic and eukaryotic cells

A

-Eukaryotic flagella are constructed out of microtubules in a “9 + 2” arrangement, whereas prokaryotic flagella are built out of a bacterial protein called flagellin, organized in to a base, hook, and filament. -Prokaryotic cell walls are constructed out of peptidoglycan, whereas eukaryotes with a cell wall utilize other carbohydrates, such as cellulose in plants or chitin in fungi. -Prokaryotes have smaller 70S ribosomes whereas eukaryotes have 80S ribosomes.

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24
Q

What structure remains the same between eukaryotic and prokaryotic cells?

A

The Plasma membrane

25
Q

What is the bacteria that grow at body temperature?

A

Mesophiles (grow at body temp 37 degrees C)

26
Q

What characteristic do prokaryotes and Mitochondria share?

A

An Electron transport system

27
Q

Differentiate between how prokaryotes vs eukaryotes reproduce

A

-Mitosis is the process by which eukaryotic cells divide and reproduce, -Prokaryotes reproduce via binary fission.

28
Q

When do gram negative bacteria produce endotoxins ?

A

Gram-negative bacteria produce endotoxins as part of their outer lipid bilayer and these are released upon cell death

29
Q

How would you characterize bacterial gut flora ? Describe the type of environment

A

The bacterial flora of the gut is most likely characterized as mesophilic obligate anaerobes. Mesophilic bacteria live in moderate temperatures
- The gut’s environment is oxygen poor; the flora are obligate anaerobes.

30
Q

What kind of bacteria is opportunistic? Explain why

A

The best example of an opportunistic bacterial infection is a Staphlycoccal infection in a wound. Staphylococcus is a normal part of the skin’s flora and is helpful in combating other pathogenic organisms unless it ends up on damaged or exposed tissue, such as an open wound, where it can then cause an opportunistic infection.

31
Q

What process does NOT occur in bacteria ?

A

mRNA processing does NOT occur

32
Q

Which processes happen in bacteria ?

A

-electron transport
- regulation of transcription.
- simultaneous transcription and translation (since no mRNA processing is required)

33
Q

Compare and contrast the genomes and chromosomes of prokaryotes vs eukaryotes

A

Eukaryotic chromosomes are linear and wrapped around histone proteins to form nucleosomes. Prokaryotic chromosomes are circular but are not wrapped around histone proteins
- Prokaryotic genomes are smaller with fewer sections of repetitive sequences

34
Q

What is a facultative anaerobe ?

A

Facultative anaerobes will use O2 if it is present (via glycolysis, the Krebs cycle, and oxidative phosphorylation), but can survive in absence O2 by using glycolysis alone

35
Q

in microbiology what is a lawn?

A

lawn :an unbroken layer of bacteria on the surface of the growth medium

36
Q

in microbe what is a plaque

A

plaque: an area of clearing, or no bacterial growth, within a lawn

37
Q

What is found in bacterial cytoplasm but NOT animal cytoplasm

A

RNA polymerase (only found in bacterial cytoplasm )

38
Q

compare and contrast structures that are in cytoplasm for bacteria and animal cells

A

A. Both bacteria and animal cells will have glycolytic enzymes, mRNA, and ribosomes in their cytoplasms as this is where glycolysis and protein translation take place in both types of cells
- BUT RNA polymerase only found in cytoplasm of bacteria

39
Q

Where does transcription occur In eukaryotes ?

A

NUCLEUS

40
Q

Describe the characteristics of prions

A

-Prions are contagious and can be passed from organism to organism via ingestion.
Prions are usually very Resistant to degradation by heat or chemicals and
- found in the nervous system
Prions can also be associated with gene mutations;

some (like familial insomnia) are caused by mutations that result in abnormal protein folding.

41
Q

What are characteristics of Viroids?

A

-Viroids are RNA, and thus, there would be NO thymine in its genome. Viroids do NOT have capsids
-Do NOT usually code for proteins. -Viroids are SINGLE stranded

42
Q

Which enzyme is required to transcribe mRNA for viral proteins after insertion into genome? Explain why?

A

DNA dependent RNA polymerase. The first part of the enzyme name (“___ dependent”) describes what type of nucleic acid the enzyme uses as a template, and the second part of the enzyme name (“___ polymerase”) describes the type of nucleic acid the enzyme synthesizes. Since this enzyme is synthesizing mRNA, it must be an RNA polymerase.

43
Q

What must occur for viral genome to be inserted into host genome?

A

the viral genome must have been converted to its DNA version by reverse transcriptase (an RNA dependent DNA polymerase).

44
Q

how can viroids cause disease?

A

Viroids can serve as siRNAs that silence expression of genes that are necessary for cell function

45
Q

What are steps required to replicate a (-) RNA virus?

A

A (–)RNA virus must synthesize a replication template (a (+)RNA copy of its genome) using RNA-dependent RNA polymerase. That same enzyme can then synthesize multiple (–)RNA copies for placement in new virions.

46
Q

Describe the life cycle of a lysogenic phage

A

As part of their life cycle, lysogenic phage incorporate their genome into their host’s genome.
Later, when the viral genome is excised, sometimes a portion of the host’s genome is taken as well and is copied and packaged up with the viral genome. That portion of the host’s genome now effectively becomes part of the viral genome and is transferred to each new host upon infection.

47
Q

what process allows for genetic diversity?

A

Transduction

48
Q

what kind of cells do prions destroy ?

A

prions slowly destroy NEURONS, typically in the central nervous system.
(it can take a long time (years, decades)before symptoms from prion effect appears in humans)

49
Q

What kind of transport allows for infection of animal cells by viruses ?

A

**Receptor-mediated endocytosis **allows for infection of animal cells by viruses.
Animal cells can take up viruses by endocytosis when the virus interacts with a specific cell surface receptor.

50
Q

Which viruses should be able to reproduce if they carry RNA-dependent RNA polymerase into their host cell ?

A

I.
(+) RNA virus

II.
(-) RNA virus

III.
ds DNA virus

51
Q

Which process can viroids partake in order to replicate their genome?

A

Viroids can alter the RNA polymerase and transcriptional machinery of certain host cells to replicate their genetic material.

52
Q

what is function of primase?

A

Primase makes a short RNA sequence from a DNA template,

53
Q

What is function of DNA polymerase ?

A

DNA polymerase copies DNA from DNA

54
Q

what are ways prion infections occur?

A

-Inheritance
-Spontaneous mutations
-Consumption (consuming tissue that contains prions)

55
Q

What can occur in a viral host that is eukaryotic and has RNA genome?

A

it is likely that the genome has a poly-A tail to mimic eukaryotic RNA and facilitate TRANSLATION

56
Q

What is something that all viruses must have?

A

CAPSIDS

57
Q

What is a capsid?

A

A capsid is a protein coat that surrounds and protects the viral genome

58
Q

What induces the folding of subviral particles of viroids ?

A

Viroids have many regions with self-complementarity to induce the folding of their sequence.

59
Q
A