Microbiology Cameron McCloskey Flashcards
Gram+ organisms stain…
Purple
Stain well due to thick peptidoglycan layer
Gram- organisms stain…
Pink
Thinner peptidoglycan layer doesn’t retain stain well
Endotoxin is produced by…
Grams -
Exotoxin is produced by…
A
Gram+ organisms and G-
Exported from the cell
Gram+ cocci in chains are?
A
Streptococciستريبتو كوسكاي
Gram+ cocci in clusters are?
A
Staphylococci ستافيلو كوكاي
Coagulate positive in clusters
The test to classify different Streptococci spp.? ستريبتو كوكاي
Haemolysis
Alpha (partial) - Strep. pneumoniae + viridans
Beta (complete) - Group A (pyogenes) and B Strep.
Gamma (none) - Enterococcus sp.
Examples of: Alpha-haemolytic Streptococci?
A
Strep. pneumoniae نومونيا + “viridans” group
Examples of: Non-haemolytic Streptococci?
A
Enterococcus sp. انترو كاكس
The test to distinguish Staphylococcus aureus from other Staph. spp.?
A
Coagulase test
+ve = Staph. aureus اوريس
-ve = other Staph. spp. and epidermidis (common skin commensals)
Opportunistic pathogen? ابرو تونيستك
Probably only cause infection in immunocompromised individuals
Virulence?
A
Degree of pathogenicity of an organism
Stages of viral replication?
-Attachment
-Entry - endocytosis
-Uncoating - viral nucleic acid released from capsid
-Nucleic acid and protein synthesis - host ribosomes used or polymerases
-Assembly = nucleic acid and proteins packed together
-Release =
Budding- Viruses released with envelope
derived from host cell membrane
Lysis- Virus accumulates until cell bursts,
kills cell
Virus detection?
PCR
Antigen detection
What do cytoxic T lymphocytes do in virus immunity?
A
Recognise proteins on cell surfaces as foreign and signals infected cell to commit suicide in order to prevent formation of new viruses
The 5 methods of spread of infection are…
A
Inhalation, Ingestion, Inoculation, mother to Infant, Intercourse
Viruses contain RNA or DNA, never both. True/False?
True
Size of their capsid (protein coat) limits space
Of both gram positive and negative which of the two has a larger periplasmic space?
A
Gram negative
(They have two different periplasmic spaces)
Which bacteria class has two membranes?
A
Gram negative
(Outer and plasma)
What exists on the outside of gram negative bacteria that confer antigenic properties?
A
Lipid polysaccharides (endotoxins)
Besides having antigenic properties, what other important characteristic do lipid polysaccharides possess?
A
They have bacterial toxin properties which cause damage to neighboring cells and evoke an inflammatory response
Why are gram positive bacteria more susceptible to antibiotics?
A
The outside peptidoglycan layer can act as a target for antibiotics such as penicillin
What happens when antibiotics bind to the peptidoglyan layer of gam positive bacteria?
A
The peptide cross links within peptidoglycan are broken down
What are flagella and fimbriae (pili)?
A
Extracellular proteinaceous extensions
What 5 key factors so bacteria require to grow and thrive?
A
Food (C, O, H, N, salts and vitamins etc.)
Correct temperature
pH
Osmotic pressure
Oxygen content
What are the stages in the chain of infection?
A
- Infectious microbe
2.Reservoir - Portal of exit
- Mode of transmission
- Portal of entry
- Susceptible host
What are the only 5 ways in which infection can be spread?
A
Inhalation
Ingestion
Inoculation (vaccination or artifical introduction) - direct or indirect
Mother to infant - vertical transmission
Intercourse - STI or STD
In what 5 situations (clinically) is hand washing necessary?
Before patient contact
Before aseptic task
After bodily fluid exposure
After patient contact
After contact with patient surroundings - when leaving zone
What are the three bacterial shapes?
A
Bacilli
Cocci
Spiral shaped
In what two ways can cocci divide?
A
In two planes - produce chains
In three planes - produce clusters
what is Atypical Bacteria
A
atypical bacteriais that they cannot beculturedin the normal way or detected using agram stain. most often implicate in pneumonia
What bacterium causes the disease cholera?
A
Vibrio chlolera
(Vibrio family of 34 members)
What are rigid spiral bacteria called?
Spirillum سباي ريليم
What are flexible spiral bacteria called?
A
Spirochaete سبايروكيت
How are the flagella utilised differently between spirullum and spirochaete?
A
Spirillum - tufts at each end to aid movement
Spirochaete - within periplasm causing cork-screw motion - efficient at travelling through secretions
What are fusiform bacteria?
A
Bacteria with a thin strand structure that play a part in the natural gut flora
Why are fusiform bacteria potentially dangerous?
A
By crossing the placenta in pregancy, they can cause still births and even cancer
With gram positive bacteria there is only one type of membrane, what is it?
A
Cytoplasmic membrane
What is selctive media?
A
This is a growth medium that contains specific nutrients for a specific type of microbe to grow over others
What is haemolysis?
A
Destruction of red blod cells
What is alpha haemolysis?
A
Partial haemolysis - greening of colonies (remember greening )
What is beta haemolysis?
A
Total haemolysis - the most aggressive
What is gamma haemolysis?
A
No haemolysis
What is multi locus sequence typing (MLST)?
A
This allows sequences of bacterial DNA and entire genomes to be sequenced and uploaded to a database
This allows previously sequenced sections to be matched to newly scanned sequences
Microorganisms can be classed depending on where they originate in relation to the body. What are these classifications?
A
Endogenous - originate from within the body
Exogenous - originates outwith host
- Endotoxin is not really a toxin its a series of components from the outer surfaces of the Gram-negative cell wall, that you think of as being the predominant material the Lipopolysaccharide or LPS. Its immunostimulatory and key factor in Gram-negative sepsi
What are commensal organisms?
A
Organisms that are Endogenous , part of the natural flora and often form mutual relations with the host
examples E.(scherichia) coil (urinary infection) , Klebsiella and proteus (wound infection) .
What are opportunistic organisms?
A
Exogenous organisms that infect the host when there is an opportunity such as immunocompromisation
Aerobic gram negative cocci appear in which formation?
A
Diplococci ديبلو كوكاي (two cocci)
What are the two (out of 10) pathogenic aerobic gram negative cocci species?
A
Neisseria .(ناسيريا) meningitidis - can cause meningitis
Neisseria gonorrhoea كا نا ريا - can cause gonorrhoea
What are coliforms كولافورم?
A
Gram negative bacteria - rod shaped and non-spore forming
Can grow either anerobially or aerobically - better aerobically
Many part of the natural bowel flora
Should not enter sterile areas as can cause disease e.g. peritonitis, UTI, biliary tract infection etc
What is the first line antibiotic used for any infection caused by coliforms?
A
Gentamicin
What is it on the outside of gram negative bacteria that stimulates the immune system?
A
Lipopolysaccharides (endotoxins) composed of O antigens and lipids
Why can it be advantageous for gram negative bacteria to stimulate the immune system?
A
Vascularity, available nutrients and protein production can increase
Describe the mechanism of fever production which lead to sepsis
A
Endotoxin interacts with macrophages to stimulate immune response and cytokine release
Cytokines cause adverse effects of sepsis and travel to the hypothalamus
Prostaglandin E is produced which means the body perceives itself as cold
Shivering is stimulated which generates heat and rasies the body temperature
Describe the process of sepsis
A
Small blood vessels become leaky meaning fluid is lost into tissues - due to inflammation
This causes hypovolaemia
Blood pressure is reduced
Organ perfusion becomes inadequate and organ shutdwon may occur
Blood clotting system activates leading to clot formation
Clotting factors become used up leading to haemorrhage
When will septic shock occur?
A
After cell death lipopolysaccarides are released (causing inflammation), yet this also happens with valid treatment
But, due to the sudden disintegration of many cells septic shock will occur due to the huge immune response initiated
What is the most important group of non-haemolytic streptococci?
A
Enterococci ينترو كوكاي
(two type of enterococcus E.faecalis and E.faecium)
What is Clostridium كلوست ريديم spp and why is it hard to treat?
A
Gram positive anaerobic baccili باسلي - part of normal bowel flora
Spores are produced - can live outside body
Exotoxins produced can cause severe body damage
Antibiotic resistant (spore production) and general resistance
What are the two main classes of antiobiotic that related to their function?
A
Bacteriostatic - inhibits growth
Bacteriocidal - kills bacteria
What are narrow spectrum antibiotics?
A
Antibiotics which are very specific in the bacteria that they target
Which types of antibiotics will target the cell wall?
A
B lactam (includes penicillins)
Glycopeptide
Describe how penicillin halts cell wall production
A
Peptide cross links exist in the cell wall
These are formed from D alanine to D alanine terminal proteins
Such terminal proteins are formed when transpeptidase cleaves this dipeptide, releasing energy and creating the bond
Penicillin resembles a terminal protein such as this and can bind irreversible to transpeptidase which halts cell wall production (((((bactericidal antibiotic))))
What are beta lactam antibiotics?
A
Antiobiotics containing the beta-lactam ring in their molecular structure
Common in penicillins, co-amoxiclav, cephalosporins etc.
Name a penicillin which targets gram positive bacteria well
A
Flucloxacillin
فلوكلو كلاسلين
(IV or oral)
What are the 3 forms of penicillin?
A
Benzylpenicillin |(b’enzil) (penicillin G) - IV
Phenoxymethyl فا نوكسي penicillin
(penicillin V) -oral
Benzathine بين زاثين penicillin - IM
What is flucloxacillin فلكو كلاسيلين commonly prescribed for?
Streptococcus aureus
Skin infections from staph and strep
Deals with gram positive bacteria
What is the purpose of clavulanic كلافالانك acid in co-amoxicillin ?
A
B lactamases are microorganisms that destroy the B lactam ring of antibiotics including amoxicllin renderinging them useless
Clavulanic acid inhibits B lactamases which allows the B lactam ring to remain intact.
Essentially co-amoxiclav is a “work around” to allow amoxicillin to work where it wouldn’t normally
What is special about temocillin?
A
It is resistant to B lactamases
It will generally target coliforms
Cephalosporins are very attractive antibiotics due to their bacteriostatic and bacteriocidal properties as well as being B lactamase resistant. However, what is their major disadvantage?
A
They are broad spectrum so cause damage to the natural flora
This clears the environment for dangerous bacteria which they cannot kill
They remove the competition for harmful bacteria
Do glycopeptide antibiotics possess a B lactam ring in their structure?
A
No
Give two examples of glycopeptides
A
Vancomycin
Teicoplanin تيكو بلينين
How do glycopeptides function?
A
They bind to the end of peptides
This prevents peptide binding proteins such as transpeptidase from binding to their substate (the protein)
Proteins cannot be incorporated into the cell wall
Peptidoglycan cannot be synthesised
Cross links are reduced and the cell wall is weakened