Microbiology Flashcards

1
Q

What is considered mild diarrhoea?

A

3 or few stools per day ( without abdominal or systemic symptoms)

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2
Q

What is considered moderate or severe diarrhoea?

A

4 or more stools per day associated with [abdominal symptoms (cramps, nausea, vomiting, tenesmus) systemic symptom (fever, malaise, dehydration)].

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3
Q

What is Dysentery?

A

Passage of frequent , small- volume stools accompanied by blood, mucus, abdominal pain (cramping) and tenesmus. (ineffectual and painful straining at stool.

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4
Q

What are the most common sources of Dysentry?

A
  1. Shigella spp.
  2. Campylobacter spp
  3. Enteroinvasive Escherichia Coli
  4. Salmonella enteritidis (?)
  5. Yersinia enterocolitica (?)
  6. Antibiotic –associated diarrhoea Clostridium difficile
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5
Q

What type of bacteria is Shigella?

A

Gram - negative bacilli

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6
Q

What type of Shigella is seen primarily in underdeveloped countries?

A

Shigella flexneri

“They can’t flex because they’re underdeveloped “

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7
Q

What type of Shigella is the most common in the industrial world ?

A

Shigella sonnei

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8
Q

Shigella outbreaks normally occur in?

A
  • Homosexuals men
  • Under conditions of crowding
  • Where personal hygiene is poor, such as in jails, institutions for children, daycare centres, mental hospitals and crowded refugee camps.
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9
Q

What is the infectious dose for Shigella?

A

10-100 or 100-200 Low infectious dose

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10
Q

What type of cells does the Shigella bacteria adhere and invade?

A

M cells in Peyer’s patches.

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11
Q

From what type of bacteria is Shiga toxin produced in?

A

Shigella dyenteriae type 1

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12
Q

What is the Shiga Toxin?

A

This toxin is a subunit protein composed of one A subunit and five B subunits with binding specificity for a specific microvillus membrane glycolipid receptor

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13
Q

Fill in the blanks. “In relation to the Shiga toxin, The glycolipid receptor for the B subunit are located on __________.”

A

The villus cells

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14
Q

True or False? The glycolipid receptor for the B subunit are located on the villus cells and NOT the crypt cells, thereby impairing sodium adsorption without affecting chloride secretion and leading to net luminal fluid accumulation.

A

TRUE!!

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15
Q

What does the A unit for the Shigella Toxin cleaves ?

A

The A subunit enzymatically cleaves the 28S ribosomal RNA of the 60S ribosomal subunit in eukaryotic cells with resultant inhibition of protein synthesis .

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16
Q

Haemolytic - uremic syndrome , Toxic Megacolon , Disseminated intravascular coagulation (DIC) & Sepsis is associated with which type of Shigella?

A

Shigella Dysenteriae Type 1

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17
Q

What is Reiter’s syndrome?

A

It is a post infectious arthropathy-the triad of nongonococcal urethritis, conjunctivitis and arthritis, frequently with mucocutaneous lesions.

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17
Q

What is the culture used for the diagnosis of Shigella?

A

MacConkey (indicator).

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17
Q

How is the culture presented for Shigella?

A

Shigella forms a non-lactose fermenting pale coloured or colourless and transparent colonies.

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18
Q

What is the preffered drug of choice to treat Shigella?

A

Antimicrobial therapy

For cases in which susceptibility is unkown or an ampicillin-resistant strain is isolated, Bactrim is the drug of choice.

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18
Q

What is Food Poisoning?

A

A non-specific term applied to the syndrome of acute anorexia, nausea and vomiting +/- diarrhoea that is attributed to food intake especially if it afflicts groups of persons. It may or may not be accompanied by fever.

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18
Q

What are chemically - related food poisonings?

A
  1. Ackee, mushroom poisoning
  2. Heavy metals eg. Copper, Zinc, Selenium, Cadmium
  3. Toxic fish poisoning eg. Shellfish - saxitoxin - clams, oysters - ciguatera - ciguatoxin-snapper - barracuda 4. Chinese Restaurant syndrome –MSG
  4. Salt petre: methaemoglobinemia
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19
Q

What is the pathophysiology for non- inflammatory diarrhoea from food posoining?

A

It is caused by action of enterotoxins on the secretory mechanisms of the mucosa of the SI without invasion (watery, no leukocytes)

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20
Q

What is the pathophysiology for inflammatory diarrhoea from food posioning?

A

It is caused by cytoyoxins on the mucosa leading to invasion & destruction. Colon or distal small bowel involved.
* Diarrhoea bloody with leukocytes.

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21
What is the time period for clinical presentation of chemical poisoning?
Within 30 minutes
22
What is the time period for clinical presentation of Preformed toxin ?
Within 1-6 hours
23
What are the steps in the investigation of outbreaks due to food poisoning?
1.Identify index case 2. Proper clinical history 3. Determine I.P. eg. Illness 4. Identify common foods eaten 5. Determine food specific attack rates for everything served
24
What are the specimens to be collected from patients with suspected food poisoning ?
Stool Vomitus Blood
24
What are the specimens to be collected from Foodhandlers with suspected food posioning?
Stool Nose Hand
25
True or False? Most cases of Food-Poisoning are self- limiting.
TRUE!!
26
What are indications for antibiotic treatment for Food poisoning?
* Fever of >38C plus… * Faecal leukocytes +blood or mucus in stool * Isolation of some organisms eg Shigella, S typhi * Immunocompromised patients
27
Fill in the blanks. " Salmonella is a genus in the family _________."
Enterobacteriaceae
28
True or False? Salmonella is a gram- positive cocci in chains.
FALSE!! Gram-negative rods
29
What type of Salmonella species is a contaminant found in marijuana?
S. munchen
30
Which type of Salmonella species can be found in eggs?
S. enteritidis
31
Salmonella Dublin is mostly associated with what substances?
Milk , cow liver
32
What are the three kinds of surface antigens for Salmonella?
1. Flagellar or ‘H’ antigen 2. Somatic or polysaccharide ‘O’ antigen 3. Polysaccharide Vi antigen in S. typhi/paratyphi
33
What is the laboratory diagnosis used for Salmonella using a stool sample?
MacConkey agar & SS ( Salmonellla / Shigella )agar - non lactose fermenting colonies
34
What are the most common sites for Intra-abdominal infections?
* Peritoneal cavity * Retroperitoneal space
35
What are the two types of Intra-abdominal infections?
1. Diffuse ( Peritonitis) 2. Localized ( Abscesses)
36
What are the most common locations for Intra peritoneal abscesses?
1.Pelvic space 2.Perihepatic spaces 3.Within lesser sac 4.Paracolic gutter
37
What are the different types of visceral abscesses?
Hepatic Renal Splenic Tubo-Ovarian
38
What are the types of Infective Peritonitis?
Primary & Secondary
39
What are the types of Peritonitis?
1. Infective 2. Chemical 3. Combination fo 1& 2
40
Explain Chemical Peritonitis.
It involves the escape of bile, gastric or pancreatic secretions into the peritoneal cavity.
41
What normally leads to the formation of abscesses?
Phagocytosis resistant anaerobes
42
What is an expected laboratory result for a confirmation of Peritonitis?
Leucocytosis with predominant polymorphs, increased hematocrit, blood urea, serum amylase etc.
43
What is the treatment for Peritonitis caused by Group A Streptococcus?
Penicillin G
44
What is the treatment for Peritonitis due to Staph Aureus ?
Cephalosporin
45
Fill in the blanks." The treatment for Peritonitis due to Anaerobes are ______, _____ & ______."
Metronidazole Gentamicin Clindamycin
46
Augmentin, PIP/TAZ, carbapenems, cephalosporins is used to treat Peritonitis caused by what organism?
Enterobactericeae
47
What is the most common bacteria associated with Intraabdominal Abscesses?
Anaerobes
48
Which lobe of the liver is more commonly involved with amoebic abscesses?
Right lobe!
49
What are the two types of Hepatic abscesses?
Pyogenic ( Bacterial) Amoebic
50
What type of abscess has uncommon lesions and may occur in sicklers, after trauma or bacteriemia?
Splenic Abscess
51
What are the clinical presentations primary peritonitis in a cirrhotic patient?
- jaundice - hepatic encephalopathy - ascites - azotemia
52
True or False? If there is a hepatic abscess in the right lobe, there is localized tenderness, pain in right shoulder and respiratory signs while if it were in left lobe, epigastric pain with tenderness and rigidity of left rectus muscle.
TRUE !!!
53
True or False? An ultrasound can be used in the diagnosis of a hepatic abscess.
TRUE!!
54
What is the treatment for Amoebic abscesses?
Metronidazole
55
What is Group A Shigella known as?
Shigella Dysenteriae 'AD' Shigella has an ad
56
What is Group B Shigella known as?
Shigella Flexneri 'BFfr'
57
What is the Incubation period for Shigella?
6 hours -9 days ( usually 72 hours)
58
By what process does Shigella survive phagocytosis?
Apoptosis ' Shigella survives phagocytosis by apoptosis'
59
What is the most important test in diagnosing Shigella?
Fecal leukocytes
60
True or False? Fecal lactoferrin is a more sensitive test than Fecal leukocyte in the diagnosis of Shigella.
TRUE!!
61
What is the treatment of choice for Shigella?
Fluroquinolone ( ciprofloxacin)
62
True or False? Serotypes 2-15 do not elaborate Shiga toxin.
TRUE!!!
63
Fill in the blanks. "Reactive Arthritis is associated ________."
HLA-B27
64
What is the rate of transmission for Campylobacter?
230,000 cases annually
65
What type of bacteria is Campylobacter?
Gram-negative rods & Microaerophilic ( 5-10%)
66
At what temperature is Campylobacter best grown at ?
42 degrees Celsius
67
What is the Incubation period for Campylobacter?
48 hours
68
Which type of Campylobacter is commonly found in Dogs & Cats?
Campylobacter Upsaliensis
69
Which type of Camnpylorbacter is associated with Guilliane-Bar syndrome and Reactive Arthritis?
Campylobacteria Jejuni
70
What is the infective dose of Campylobacter?
5-8 x 102 cells/ml
71
What is the treatment for Campylobacter?
Macrolides: Azithromycin (adults), Ciprofloxacin, Tetracycline Erythromycin ( Children 10mg/kg for 3 days)
72
What is the most common cause of Traveler's Diarrhea?
Campylobacter
73
True or False? Campylobacter is usually self-limiting.
TRUE!!
74
What is the stool transport mediums for suspected Food poisoning cases.
Sterile container, Buffered glycerol saline (BGS)
75
Which bacteria is associated with Hospital - associated diarrhoea.
Chlostridium dificile
76
What is the solid stool culture methods for persons with Food poisoning?
MacConkey agar, Sorbitol MacConkey, Salmonella/ Shigella agar , XLD( Xylose- lysine-deoxycholate) agar, Campy agar
77
What is the liquid stool culture for persons with Food poisoning .
Gram negative broth Selenite Broth
78
What is the causative agent in Acute diarrheal infection ?
Vibrio Cholera
79
What is the Gram reaction of Vibrio cholera?
Short curved Gram negative rods
80
Which types of Vibrio cholera produce Cholera toxin?
V. cholerae O1 and O139
81
What is the name of the receptor to which the B in the AB- toxin binds to?
GM1 Ganglioside
82
What is the selective media for Vibrio cholera?
TCBS (thiosulfate citrate bile salt sucrose)
83
Fill in the blanks. " The immunoassays are used to detect types ____________ & _______ of the vibrio cholera?"
O1 , O139
84
What are the symptoms of Cholera?
Profuse watery diarrhea “rice-water stools” Vomiting Thirst Leg cramps Restlessness or irritability
85
What are the signs of Cholera?
Tachycardia Decreased skin turgor Dry mucous membranes Hypotension
86
What is the treatment for Cholera?
* Oral rehydration and electrolyte replacement * Prevent hypovolemic shock – rapid administration of IV fluids * Antibiotic therapy * Single dose of azithromycin (drug of choice) OR * Single dose doxycycline or ciprofloxacin (non-pregnant females) Resistance is increasing
87
Which types of E.coli are associated with Traveller's Diarrhoea from Nosocomial and daycare outbreaks?
Enteropathogenic E. coli (EPEC)
88
Which type of E.Coli is associated with Traveler's diarrhea” in persons < 5 yrs. Foodborne outbreaks?
Enterotoxigenic E. coli (ETEC)
89
Which type of E.coli, causes bloody diarrhoea like Shigella?
Enteroinvasive E. coli (EIEC)
90
Which type of E-coli causes Mild non-bloody diarrhea, hemorrhagic colitis, HUS?
Shiga toxin-producing E. coli (STEC)
91
What is the Gram-reaction for E-coli?
Short Gram-negative rods
92
What agar are used in the culture of Shiga-Toxin E.Coli?
* Sorbitol MacConkey Agar (differential media) * Cefixime tellurite Sorbitol McConkey agar * CHROMagar™ O157
93
How does Enteropathogenic E.coli attach to the mucous surface?
Bundle-forming pili (BfpA)
94
How does Enterotoxigenic E. coli attach to the mucous surface?
CFA Colonization Factor Antigen)
95
96
Which E.Coli is associated with a Honeycomb appearance?
Enteroaggregative E. coli (EAEC)
97
Which organism is Catalase positive, oxidase negative and can reduce nitrate to nitrite?
Salmonella
98
Which classification restricts genus of Salmonella to only 3 subtypes?
Ewing
99
Which salmonella species has 6 subspecies?
Salmonella enterica
100
What are the serogroups of Salmonella?
* Salmonella enteritidis * Salmonella typhi * Salmonella paratyphi * Salmonella typhimurium * Salmonella choleraesuis
101
What is the mode of Transmission for Salmonella?
Especially poultry, eggs, meat, milk and cream
102
What are the causative agents of Salmonella IN GASTROENTERITIS?
S. enteritidis and S. typhimurium
103
What is an Enteric fevers?
A multi-organ system salmonella infection characterized by prolonged fever, sustained bacteremia and prolonged involvement of the mesenteric lymph nodes, liver and spleen.
104
What is the aetiology for Enteric fevers?
* Salmonella typhi – most common cause * Salmonella paratyphi A, B, C
105
What are the clinical features of Typhoid fever?
* Bradycardia (infrequent in children) * Malaise * Myalgia * Diarrhoea uncommon (< 1/3) * Splenomegaly – may be found * Headache and constipation (common) * “Rose spots”
106
What is the drug of choice for Typhoid fever?
Chloramphenicol
107