Lecture 9: Population growth Flashcards

1
Q

What is the formulation for population growth during active growth.

A

2^n

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2
Q

What is the difference between synchronous and asynchronous growth?

A

Asynchronous growth is when the timing of cell division is random, and it produces a smooth exponential growth plot. Synchronous growth is when cells divide at the same time, and it produces a stepwise growth plot.

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3
Q

What are the two ways to plot asynchronous growth?

A

Along an exponential curve with time on the x axis and population on the y axis or along a linear curve with time on the x axis and the logarithm of population on the y axis.

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4
Q

Describe the growth curve of a synchronous culture.

A

It is a stepwise curve. As time passes, the steps begin to lose their definition as the cells fall out of synch. `

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5
Q

Growth rate is also called […] or [..]

A

Doubling time, generation time

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6
Q

What is the definition of generation time?

A

The period required for a cell just after division to enlarge, divide, and produce two daughter cells.

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7
Q

All cells in a population have [the same/a different] doubling time assuming the same growth condition for all.

A

The same

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8
Q

Generation time can vary with […]

A

The availability of nutrients

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9
Q

Explain how generation time varies with the availability of nutrients.

A

In a closed environment, a population will grow quickly when there are a lot of nutrients. As this happens, there will be an accumulation of toxic metabolic compounds and nutrient availability will go down, slowing generation time.

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10
Q

We would expect the growth time of E. coli in the lab to be [longer/shorter] than it is in the gut, because […]

A

Shorter, because in the gut it has to compete with other organisms for limited nutrients.

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11
Q

Doubling time is determined by looking at the […] portion of the growth curve.

A

Exponential phase, which is the (logarithmic) linear portion

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12
Q

Name the four major phases of growth.

A

Lag phase, exponential phase, stationary phase, death phase

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13
Q

Explain what happens in the lag phase of growth.

A

It is time for cells to adjust to a fresh or new medium and restart their metabolism and start dividing

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14
Q

Explain what happens in the exponential phase of growth

A

This is the period where nutrients are not in limiting amounts and where cells divide at their maximum speed (where they have their lowest doubling time).

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15
Q

Explain what happens in the stationary phase of growth.

A

The culture switches over once the nutrient concentration has become limiting and toxic waste begins to accumulate. Cells divide slower and eventually stop growing (doubling time gradually increasing)

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16
Q

Explain what happens in the death phase of growth.

A

Nutrients have been completely consumed and cells are starting to burst and die, although not all cells die.

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17
Q

The stopping of growth occurs in the […] phase of growth.

A

Stationary

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18
Q

Name 5 reasons why the lag phase of growth might be longer than standard.

A
  • Inoculum taken from an old culture
  • Inoculum taken from a rich medium and added to a poorer one
  • Inoculum taken from a chemically different medium
  • Inoculum taken from refrigerated cells
  • Cells inoculated into a cold medium
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19
Q

Explain how inoculum taken from an old culture causes a longer lag phase.

A

An old culture will have few live cells left, and they will have nearly completely stopped their metabolism If you inoculute them into a fresh culture it will take longer before they start growing again.

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20
Q

Explain how inoculum taken from a rich medium and added to a poorer one causes a longer lag phase.

A

If we go from a medium where all the amino acids are provided for the cells to a new one where they have to make everything themselves, there will be a growth delay

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21
Q

What will the effect be of inoculum taken from a poor medium to a rich medium on the lag phase?

A

There will be no lag.

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22
Q

Explain how inoculum taken from a chemically different medium causes a longer lag phase.

A

The cells will have to synthesize new enzymes to be able to degrade a different nutrient source (i.e. going from glucose to lactose)

23
Q

Explain how inoculum taken from refrigerated cells causes a longer lag phase.

A

It takes a while for the medium to warm up to the ideal temperature

24
Q

Explain how cells inoculated into a cold medium causes a longer lag time.

A

Cells are only able to grow when temperatures are high enough, so it would take longer for them to start replicating until the medium warmed up.

25
Q

A way to have a constant flow of nutrients to a culture is to use a […]

A

Chemostat

26
Q

Explain what a chemostat is.

A

A chemostat consists of medium that is pumped into a culture vessel. There is an overflow tube so that there is constantly medium entering and leaving the culture, maintaining a consistent volume. This provides a constant influx of nutrients and allows the culture to keep growing at the same rate.

27
Q

The dilution rate in a chemostat is […]

A

How fast you pump new medium into the culture vessel

28
Q

Explain how cell density/biomass varies with dilution rate in a chemostat.

A

It remains nearly consistent (very slightly decreasing) as dilution rate increases, because if you speed up the pump you speed up overflow as well. So as the population grows, other cells are leaving through the overflow. However, after a certain threshold, the biomass takes a steep drop because the cells can no longer keep up their division rate with the influx of medium and will simply get flushed out.

29
Q

Explain how generation time varies with dilution rate in a chemostat.

A

As dilution rate increases, generation time gradually decreases, because with faster influx of new nutrients, cells will reproduce faster and faster.

30
Q

Explain how nutrient concentration varies with dilution rate in a chemostat.

A

It will remain very low and slowly rise until it reaches a given threshold, after which is skyrockets because the culture can no longer metabolize them fast enough.

31
Q

In a chemostat, the concentration of one of the nutrients should be provided in […] amounts because […]

A

Limiting, because if you use a medium that’s too rich the cells will grow way too quickly.

32
Q

In a chemostat, all nutrients should be provided […] and […] to the growing culture

A

Continuously and at the same rate

33
Q

The cells and waste produces should be removed […] and […]

A

Continuously and at the same rate.

34
Q

Growth rate in the chemostat should be […] and equal to […]

A

Constant, equal to loss rate

35
Q

Name 3 applications of growing a continuous culture (like with a chemostat)

A
  1. Allows the study of microbial growth at low, environmentally-relevant concentrations
  2. Facilitates research into microbial ecosystems and how they compete for nutrients
  3. Allows industrial production of food and metabolites (antibiotics, vitamins), continuously
36
Q

What are the three major parameters that affect microbial growth (assuming sufficient nutrients present)

A

Temperature (optimal growth temperature), pH, gaseous environment

37
Q

Name the 5 categories of microbes according to optimal growth temperature

A

Hyperthermophiles (95ºC)
Thermophiles (65ºC)
Mesophiles (37 ºC)
Psychotrophs (25ºC)
Psychrophiles (10ºC)

38
Q

Name the 3 categories of microbes according to optimal pH for growth.

A

Neutrophiles (pH around 7)
Acidophiles (pH below 7)
Alkalophiles (pH above 7)

39
Q

Most bacterial cells and human pathogens have an optimal growth temperature of […], making them [….]

A

37ºC, mesophiles

40
Q

Most bacterial cells prefer a pH of around […], making them […]

A

7, neutrophiles

41
Q

Name the 4 categories of microorganisms according to the preferred gaseous environment for growth

A

Aerobes - need oxygen
Anaerobes - cannot tolerate oxygen
Facultative anaerobes - prefer oxygen but can tolerate anaerobic conditions as well
Capnophiles - need oxygen as well as high CO2 concentrations

42
Q

Explain why we can store E. coli at 4º without it growing.

A

Its minimum temperature of growth is 8 degrees.

43
Q

To disinfect surfaces, we typically use […] solutions because […]

A

Alkaline, because there are many microorganisms that can grow at low pHs but few that grow at very high pHs.

44
Q

Oxygen produces […] molecules, called […]

A

Toxic, reactive oxygen species

45
Q

Name the 3 protective enzymes of obligate anaerobes and facultative anaerobes.

A

Superoxide dismutase (SOD), catalase, peroxidase

46
Q

Draw the equation that shows how SOD deals with ROS.

A

2 O2-* + 2H+ –> O2 + H2O2
Deals with superoxide

47
Q

Draw the equation that shows how catalase deals with ROS.

A

2 H2O2 –> 2 H2O + O2
Deals with hydrogen peroxide

48
Q

Draw the equation that shows how peroxidase deals with ROS.

A

H2O2 + NADH + H+ –> H2O + NAD+
Deals with hydrogen peroxide

49
Q

There are no protective enzymes that can deal with […]. How must they be dealt with?

A

Hydroxyl radicals (OH*). They must be dealt with by the cell before they reach this state because they cannot be destroyed and will damage the cell.

50
Q

If you were to grow obligate aerobe bacteria in a tube, it would grow […]. Relate this to their enzyme content.

A

Only at the top of the tube, where the oxygen concentration is high. This is because they have the enzymes SOD and catalase which can detoxify ROS.

51
Q

If you were to grow facultative anaerobic bacteria in a tube, it would grow […]. Relate this to their enzyme content.

A

It would mostly grow at the top, where the oxygen concentration is high, and some would grow in the rest of the tube where O2 is lower. This is because they have the enzymes SOD and catalase which can detoxify ROS but that they can also turn off if needed.

52
Q

If you were to grow an aerotolerant anaerobe in a tube, it would grow […]. Relate this to their enzyme content.

A

They would grow all over the tube because they can tolerate both aerobic and anaerobic conditions. They have the SOD enzyme but not the catalase enzyme, so they are less effective at detoxifying oxygen.

53
Q

If you were to grow a strict anaerobe in a tube, it would grow […]. Relate this to their enzyme content.

A

They will only grow at the bottom of the tube where the O2 concentration is low. This is because they lack both SOD and catalase, so they can’t detoxify ROS.

54
Q

If you were to grow a microaerophile in a tube, it would grow […]. Relate this to their enzyme content.

A

Only within a specific oxygen concentration range. They have SOD but low levels of catalase, meaning that they are not efficient enough to survive in high O2 concentrations.