Lecture 5 - Antibody Structure, Function and Genetics Flashcards
Two types of antibodies
Membrane-bound and secreted
Light chain weight
25 kDa
Heavy chain weight
50kDa
Length of Ig domain
90-110 amino acids
Are there disulphide links between light chains?
No
Which parts make up antigen-binding domains?
Vh and Vl
Reason for flexible hinge region of antibody
Makes it less necessary for antigen to be placed very precisely relative to antibody binding site
CH2 domain role
Complement binding domain
CH3 domain role
Fc receptor binding site
Structure of Ig domain 1) 2) 3) 4) 5)
1) 90 - 100 amino acids long
2) 2 layers of beta-pleated sheet
3) between 3 - 5 antiparallel strands
4) Hydrophobic residues point inwards to form a hydrophobic core
5) Conserved cysteine regions form disulphide bridge
Classifications of Ig domains
V-like of C-like, depending on similarity to variable or constant regions
LIght chain constant region order of strands
DEBA - GFC
Heavy chain variable region order of strands
DEBA - GFCCC
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Which strands in a light chain B-pleated sheet join with a disulphide bridge?
B - F
What is the Ig superfamily?
Proteins that share structural and amino-acid homology with light or heavy chains
What can members of the Ig superfamily not be?
Cytosolic proteins
How are members of the Ig superfamily normally encoded?
As a single exon
Examples of members of the Ig superfamily 1) 2) 3) 4) 5) 6)
1) TCR
2) MHCI
3) MHC II
4) IgG
5) Cd4
6) CD8
Ig superfamily proteins are normally found where?
Bound in cell membranes
Two main proteases used to digest Ig domain
Pepsin
Papain