Lecture 5 - Antibody Structure, Function and Genetics Flashcards

1
Q

Two types of antibodies

A

Membrane-bound and secreted

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2
Q

Light chain weight

A

25 kDa

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3
Q

Heavy chain weight

A

50kDa

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4
Q

Length of Ig domain

A

90-110 amino acids

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5
Q

Are there disulphide links between light chains?

A

No

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6
Q

Which parts make up antigen-binding domains?

A

Vh and Vl

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7
Q

Reason for flexible hinge region of antibody

A

Makes it less necessary for antigen to be placed very precisely relative to antibody binding site

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8
Q

CH2 domain role

A

Complement binding domain

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9
Q

CH3 domain role

A

Fc receptor binding site

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10
Q
Structure of Ig domain
1)
2)
3)
4)
5)
A

1) 90 - 100 amino acids long
2) 2 layers of beta-pleated sheet
3) between 3 - 5 antiparallel strands
4) Hydrophobic residues point inwards to form a hydrophobic core
5) Conserved cysteine regions form disulphide bridge

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11
Q

Classifications of Ig domains

A

V-like of C-like, depending on similarity to variable or constant regions

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12
Q

LIght chain constant region order of strands

A

DEBA - GFC

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13
Q

Heavy chain variable region order of strands

A

DEBA - GFCCC`

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14
Q

Which strands in a light chain B-pleated sheet join with a disulphide bridge?

A

B - F

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15
Q

What is the Ig superfamily?

A

Proteins that share structural and amino-acid homology with light or heavy chains

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16
Q

What can members of the Ig superfamily not be?

A

Cytosolic proteins

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17
Q

How are members of the Ig superfamily normally encoded?

A

As a single exon

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18
Q
Examples of members of the Ig superfamily
1)
2)
3)
4)
5)
6)
A

1) TCR
2) MHCI
3) MHC II
4) IgG
5) Cd4
6) CD8

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19
Q

Ig superfamily proteins are normally found where?

A

Bound in cell membranes

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20
Q

Two main proteases used to digest Ig domain

A

Pepsin

Papain

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21
Q

Where does papain cut?

A

Above disulphide hinge

22
Q

Where does pepsin cut

A

Below disulphide hinge

23
Q

Effects of cutting Ig domain with papain

A

2 regions:

1) Fab (can bind antigens)
2) Fc (can be crystallised)

24
Q

Effects of cutting Ig domain with pepsin

A

1 large region:
Fab`2 - Can bind antigen, is dimeric
Other region degrades

25
Q

Structure of antibody-binding site

A

6 loops:
3 from light chain
3 from heavy chain

26
Q

Complementarity determining regions

A

3 loops of each chain that make up antibody-binding site

27
Q

Another term for complementarity determining regions

A

Hypervariable loops

28
Q

Location of hypervariable loops on V domain

A

At roughly 30 amino acids, 50 amino acids and 100 amino acids

29
Q

Where are the hypervariable loops located in an antibody?

A

All exposed on the ends of a natively-folded protein

30
Q

Ratio of kappa to lambda light chains in humans

A

~2 kappa:1 lambda

31
Q

Are kappa and lambda light chains ever mixed in a single antibody?

A

No

32
Q

Serum [IgG]

A

12g/L

33
Q

Serum [IgA]

A

3g/L

34
Q

Serum [IgM]

A

1.5g/L

35
Q

Serum [IgD]

A

0.3g/L

36
Q

Serum [IgE]

A

0.0005g/L

37
Q

Why is serum [IgE] so low?

A

IgE is bound to the surfaces of cells, such as Mast cells

Therefore not present in the blood at high concentrations

38
Q

Why is serum [IgD] so low?

A

Lacks molecular ability to be secreted.

Some IgD is present in the blood because it can be cleaved off the surfaces of cells

39
Q

Function of IgD

A

Cell surface receptor

40
Q

Number of IgM mu chains

A

10

41
Q

Does membrane-bound IgM have a J chain?

A

No

42
Q

IgG distribution

A

Serum and lymph

43
Q

IgM distribution

A

Serum

44
Q

IgA distribution

A

Serum and mucosal secretions

45
Q

IgE distribution

A

Below epithelial surfaces

46
Q
IgG features
1)
2)
3)
4)
A

1) Monomer
2) Major Ig in secondary response
3) Large, flexible hinge region
4) High affinity

47
Q
IgM features
1)
2)
3)
4)
A

1) Pentamer
2) Has extra C domain (3 C domains, 3 of which make up Fc tail structure)
3) High avidity, low affinity
4) 26aa ‘tail piece’ linked to J chain

48
Q

J chain

A

15kDa protein involved in Ig oligeromisation

Bound to IgM and IgA

49
Q

Affinity

A

The strength of binding between two molecules at a single site

50
Q

Avidity

A

Sum total of strength of binding between two molecules, where multiple binding-sites are involved

51
Q
IgA features
1)
2)
3)
4)
A

1) Dimer (tetravalent)
2) Major Ig secreted in GIT and respiratory tracts
3) 26aa tailpiece bound to J chain
4) Uses secretory component to bind to pIgR to transcytose across luminal membrane into luminal space

52
Q
IgE features
1)
2)
3)
4)
A

1) Has extra Fc domain
2) Involved in allergic reactions and anti-parasitic immunity
3) Inflexible hinge region
4) Binds to mast cells, induces degranulation