Lecture 25 & 26: Systematics Flashcards

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1
Q

What is the goal of systematics?

A

to identify and classify taxa as well as determine the evolutionary relationships of taxa

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2
Q

What is Linnean hierarchy?

A

KPCOFGS, but there are some problem with classification

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3
Q

Define homology

A

similarity in form due to descent from a common ancestor

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4
Q

Define analogy

A

similarity in form despite different ancestry; convergent evolution

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5
Q

Define grade

A

Grade = level of adaptation; organisms of similar grade due to similar adaptations due to convergence (e.g., the “dog” grade or the “anteater” grade that goes across marsupial/placental distinction)

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6
Q

Define clade

A

a group descended from one common ancestor; a genetic lineage (e.g., the placental clade vs. the marsupial clade).

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7
Q

Define sister taxa

A

two lineages that descend from a common ancestor following a splitting event

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8
Q

Define monophyly

A

a group consisted off all descents of a single common ancestor

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9
Q

Define polyphyly

A

more than one common ancestor

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10
Q

Define paraphyly

A

a “group” not containing all descendants of a single common ancestor

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11
Q

Understand the phenetic (distance) method of reconstructing a phylogenetic tree.

A
  • Collect as many characters as possible
  • Construct pair-wide distance between each taxon in your study
  • Cluster taxa based on overall similarity
  • Assume homology outweighs analogy.
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12
Q

Understand the cladistic method of reconstructing a phylogenetic tree,

A
  • Collect characters and characters states
  • Build a character matrix
  • Cluster organisms according to patterns of shared-derived characters
  • Use parsimony to determine best tree
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13
Q

Define synapomorphy

A

A shared, derived trait.

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14
Q

What is a character?

A

a trait

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15
Q

What is a character state?

A

alternative forms of a trait

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16
Q

What is an uninformative trait?

A

invariant, or in a single taxon

17
Q

What is a conflicting trait?

A

cluster taxa in a way that conflicts with clustering of other characters

18
Q

What is an informative trait?

A

both states shared by 2 or more taxa,

19
Q

What is the consistency index?

A

(number of characters in a data set)/(number of steps in a tree)

20
Q

How DNA divergence is calculated? (p-distance)

A

(number of differences) / (length of sequence)

21
Q

How is the rate of DNA divergence calculated?

A

(sequence divergence) / (age of common ancestor)

22
Q

What is a distance matrix?

A

Shows the percent divergence in DNA position between different taxa

23
Q

Bootstrap support

A

estimating the confidence in a branch