ILA Flashcards
what is the first stage of protein synthesis?
transcription
what is the second stage of protein synthesis?
translation
where does transcription occur?
nucleus
which enzyme carries out transcription?
RNA polymerase
NOT DNA polymerase
what is transcription?
DNA sequence is copied to make an RNA molecule
function of DNA helicase
unzips
breaks hydrogen bonds in the DNA double helix to unzip the DNA double helix and expose nucleotides
function of topoisomerase
unwinds
relieves the supercoils
function of single stranded binding proteins
SSBPs
stop DNA strands reannealing
where does RNA polymerase bind?
at the TATA promoter region
what is the promoter region?
TATA
in what direction does RNA polymerase move?
3’ to 5’
in what direction does RNA polymerase read?
3’ to 5’
in what direction does RNA polymerase code?
5’ to 3’
what are the stop codons?
UAA
UAG
UGA
for transcription, are one or both strands copied?
one
how does RNA polymerase work?
adds complementary mRNA nucleotides to the template strand to build an RNA chain
does the RNA transcript contain the same information as the template or non-template strand?
non template strand
this is called the coding strand
which nucleotides does RNA contain?
AUCG
what is the start and end of an mRNA strand?
poly-A tail (end) and 5’ cap (start)
product of transcription
pre mRNA
what part of pre-mRNA is removed?
introns
splicing
process of removing introns to form a fully coding strand
what part of mRNA remains after splicing?
exons
where does splicing occur?
in the nucleus
which enzymes carry out splicing?
spliceosomes
how does mRNA leave the nucleus?
nuclear pore
what is translation?
protein is synthesised from mRNA
where does translation occur?
ribosome in cytoplasm
3 bases on tRNA
anticodon
what does the tRNA anticodon bind to?
mRNA codon
3 DNA bases
triplet
describe translation
tRNA anticodons bind to mRNA codons
tRNA carries the correct amino acid
peptide bonds form between the amino acids
stop codon is reached
product of translation
polypeptide
where is mRNA broken down after translation?
cytosol
in which direction does mRNA move?
3’ to 5’ direction
transcriptome
the sum total of all the mRNA molecules
what is an SNP?
single nucleotide polymorphism
DNA sequence variation when a single nucleotide is substituted
consequences of an SNP
can result in a different codon which generates a different protein and thus disease
can affect recognition/ promoter/ termination sequences to change the length of proteins
most don’t (e.g if in an intron)
name two diseases caused by an SNP
cystic fibrosis
sickle cell anaemia
what is sickle cell haemoglobin?
HbS
genetic cause of HbS
SNP of adenine to thymine
GAG becomes GTG on 17th nucleotide
glutamic acid to valine
different primary structure
difference between sickle cell anaemia and sickle cell trait
sickle cell anaemia - both genes that code for haemoglobin are abnormal (HbSS)
sickle cell trait - only one chromosome carries the abnormal allele
how many of the beta subunits are replaced by HbS in sickle cell disease
just one
which subunits does haemoglobin have?
2 alpha
2 beta
what is normal adult haemoglobin?
HbA
is sickle cell anaemia autosomal dominant or recessive?
recessive
functional changes in HbS
red blood cells become sickle shaped
cells don’t live as long
lower affinity for oxygen
gets stuck in blood vessels
reduced oxygen delivery to muscles
primary structure of a protein
sequence of amino acids
covalently bonded
secondary structure of a protein
alpha helices and beta pleated sheets
hydrogen bonds
tertiary structure of a protein
3D structure of a single chain of amino acids
- London forces
- hydrogen bonds
- ionic bonds
- disulphide bonds
quaternary structure of a protein
the presence of more than one polypeptide chain
what fraction of water is in the intracellular fluid compartment?
2/3
what fraction of water is in the extracellular fluid compartment?
1/3
what volume of water is in the intracellular fluid compartment?
28L
what volume of water is in the extracellular fluid compartment?
14L
what volume of water is in the plasma fluid compartment?
3L
what volume of water is in the interstitial fluid compartment?
11L
what percentage of body sodium is exchangeable?
70%
what percentage of body sodium is bone crystal?
30%
what percentage of the total body sodium is in the ECF?
50%
what percentage of body sodium is in the ICF?
5%
what percentage of the body weight is water?
60%
define osmolality
concentration of a solution expressed as solute particles per kg
define osmolarity
concentration of solution expressed as solute particles per L
define oncotic pressure
pressure exerted by plasma proteins on capillary wall
force keeping water in a capillary
define osmosis
process by which molecules within a solvent pass through a semi-permeable membrane from a high to low concentration
what is hydrostatic pressure?
force pushing water out of the capillary
what part of the brain detects a low water potential?
osmoreceptors in the hypothalamus
what does the hypothalamus trigger?
release of ADH from the posterior pituitary
where is ADH released from?
posterior pituitary gland
what stimulates the posterior pituitary?
hypothalamus
what does ADH act on?
kidney
effect of ADH
increased fluid retention
is urine diluted or concentrated in the loop of Henle?
diluted
where is urine concentrated?
distal tubules and collecting ducts
is the descending limb of the loop of Henle permeable to sodium chloride and water?
impermeable to sodium chloride
permeable to water
is the ascending limb of the loop of Henle permeable to sodium chloride and water?
permeable to sodium chloride
impermeable to water
where is renin released from?
granular cells (juxtaglomerular cells) of the renal juxtaglomerular apparatus
what triggers renin release?
- reduced sodium delivery to DCT detected by macula densa
- reduced perfusion pressure in the kidney detected by baroreceptors in the afferent arteriole
- Sympathetic stimulation of the JGA via β1 adrenoreceptors
what inhibits renin release?
ANP
atrial natriuretic peptide
when is ANP released?
released by stretched atria in response to increases in blood pressure
where is angiotensinogen made?
liver
what converts angiotensinogen to angiotensin I?
renin
what converts angiotensin I to angiotensin II?
ACE
angiotensin converting enzyme
effects of angiotensin II
arteriolar vasoconstriction
Na+ reabsorption in the kidneys
triggers the sympathetic nervous system to release noradrenaline
aldosterone release from the adrenal cortex
hypothalamus - increases thirst sensation and stimulates anti-diuretic hormone (ADH) release
increases the volume of ECF and increases blood pressure
where is aldosterone released from?
zona glomerulosa of the adrenal cortex of adrenal gland
effect of aldosterone
acts on principal cells of the collecting ducts of the nephron
increases absorption of sodium and water into the blood
increases the excretion of potassium
where is albumin produced?
liver
what is the main plasma protein contributing to oncotic pressure?
albumin
what does low albumin cause?
oedema
what is low albumin levels called?
hypoalbuminemia
why does hypoalbuminemia cause oedema?
fluid moves from capillaries into interstitium
key routes of water loss from the body
urine
faeces
sweat
breath
vomiting
what are sensible water losses?
can be measured
what are insensible water losses?
cannot be measured
examples of insensible water losses
breath, sweat, faeces
give examples of sensible water loss
urine
what is vasopressin also called?
ADH
how does ADH/ vasopressin work?
binds to receptors on the collecting duct membrane
causes intracellular production of cAMP which activates protein kinase, which phosphorylates proteins that increase the rate of fusion of vesicles containing aquaporins with the membrane
what stimulates thirst?
an increase in plasma osmolarity
decrease in extracellular fluid volume
angiotensin II
what happens when renal blood flow is reduced?
juxtaglomerular cells convert prorenin to renin in the kidneys
what are the components of the juxtaglomerular apparatus?
- macula densa - part of DCT
- juxtaglomerular cells (granular cells) - afferent arterioles
- extraglomerular mesangial cells
where is the macula densa?
DCT
function of the macula densa?
sensitive to changes in NaCl
where are the juxtaglomerular (granular) cells?
afferent arteriole
function of the juxtaglomerular cells
release renin
where are mesangial cells?
central stalk of the glomerulus
what is the difference between the action of ADH and aldosterone?
ADH increases the nephron’s permeability to water whereas aldosterone increases the reabsorption of both sodium and water
effect of sodium on ECF volume, blood volume and blood pressure
an increase in Na+ in ECF =
- increased ECF volume
- increase in blood plasma volume
- increased blood pressure
a decrease in Na+ in ECF
- ECF decrease
- blood volume decreases
- blood pressure decreases
where is the thirst centre?
hypothalamus
normal homeostatic response to excess fluid
decrease in ECF osmolality detected by osmoreceptors
- water moves into ICF from ECF
- stops the stimulation of the thirst centre in the hypothalamus
- inhibits ADH in the posterior pituitary, leading to an increased urine volume
where are osmoreceptors found?
hypothalamus
consequence of excess water consumption
hyponatremia
normal homeostatic response to dehydration
increase in ECF osmolality detected by osmoreceptors
- water moves from ICF to ECF
- stimulates thirst centre of hypothalamus
- ADH released from posterior pituitary to decrease urine volume
state how much water a 70kg man has, and how much of this is intracellular, interstitial and intravascular
42L in total
28L is intracellular
11L is interstitial
3L is intravascular
estimated plasma osmolality
2[Na] + 2[K] + urea + glucose mol/L
normal range for plasma osmolality
270-310
where is ADH made?
hypothalamus
where is ADH stored?
posterior pituitary
where does ADH act?
kidney
where is aldosterone produced?
adrenal cortex of adrenal gland
where is aldosterone secreted from?
adrenal cortex
where is renin produced and secreted from?
juxtaglomerular cells of the kidney
equation for cardiac output
stroke volume x heart rate
what is cardiac output?
volume of blood pumped by the heart per minute
unit of cardiac output
L/ minute
what factors affect heart rate?
autonomic innervation, hormones, fitness levels, age
equation for stroke volume
SV = EDV - ESV
stroke volume = end diastolic volume - end systolic volume
what factors affect stroke volume?
contractility, preload, after load, heart size, fitness level, gender, duration of contraction
what is contractility?
how hard/ fast muscles flex
what is preload?
degree of myocardial distension prior to shortening
what is afterload?
force against which ventricle must act in order to eject blood
what does the LAD supply?
anterior 2/3 of interventricular septum, lateral wall of left ventricles and anterolateral papillary muscle
what does the right coronary artery supply?
SAN and AVN
right ventricle, right atrium
equation for blood pressure
blood pressure = cardiac output x total peripheral resistance
BP = CO x TPR
equation for pulse pressure
PP = SP - DP
pulse pressure = systolic pressure - diastolic pressure
equation for mean arterial pressure
MAP = DP + 1/3PP
mean arterial pressure = diastolic pressure + 1/3pulse pressure
what is pulse pressure?
difference between systolic and diastolic pressure
what is mean arterial pressure?
average arterial pressure throughout one cardiac cycle, systole, and diastole
what is stroke volume?
volume of blood pumped out of the left ventricle of the heart during each systolic cardiac contraction
which factors affect blood pressure?
vasopressin (ADH), aldosterone, ANP, haemorrhage, sweating, stressors, hydration, weight, muscular activity, posture
average cardiac output
5L/min
what is Frank Starling’s Law?
the greater the stretch of myocardium before systole, the stronger the ventricular contraction
stroke volume of the heart increases in response to increased volume of blood in ventricles before contraction
stroke volume increases with EDV
what is the physiology behind the Frank-Starling Law?
increased force because actin and myosin filaments are brought to more optimal degree of overlap for force generation
normal range of EDV
110-120ml
when is the cardiac cycle initiated?
SAN fires
what does firing of the SAN cause?
atrial depolarisation
how is atrial depolarisation represented on an ECG?
p wave
when does atrial contraction start?
shortly after the p wave
consequence of atrial contraction
blood enters ventricles
why doesn’t ventricular volume start at zero?
there is a passive movement of blood from the atria to the ventricles as the AV valves are open due to the pressure gradient
why do the AV valves shut?
ventricular pressure rises above atrial pressure
what causes the first heart sound?
closing of AV valve
how is ventricular depolarisation represented on an ECG?
QRS complex
why does the ventricular volume initially not change?
semilunar valves are shut
what is isovolumetric contraction?
ventricles contract when the semilunar valves are shut, so the volume does not change
what is the rapid ejection phase?
ventricular pressure exceeds pressure in the aorta and pulmonary artery
semilunar valves open and blood is ejected out of the ventricles
how is ventricular repolarisation represented on an ECG?
T wave
what is the second heart sound?
ventricular pressure falls below aortic pressure
semilunar valves shut
what is isovolumic relaxation?
ventricles start to relax with all valves closed
what increases ventricular pressure on the graph?
contraction
filling with blood
when is most myocardium perfused and why?
diastole
subendocardial coronary vessels are compressed during ventricular systole which results in momentary retrograde blood flow
however, the epicardial coronary vessels remain open
blood supply to the heart muscles
coronary arteries
where does venous blood from the heart muscle go?
cardiac veins drain into coronary sinus, which drains into right atrium
what does the right coronary artery supply?
right ventricle, right atrium, SAN, AVN
septum
which is the largest coronary artery?
LAD
where does the LAD run?
anterior ventricular groove
what is the most common coronary artery occlusion?
LAD
how is the LAD occluded?
plaque from cholesterol
atherosclerosis
territory supplied by the LAD
anterior 2/3 interventricular septum
lateral wall of left ventricle
anterolateral papillary muscle
consequence of occlusion of LAD
block impulse conduction between atria and ventricles
left/ right heart block
symptoms of occlusion of LAD
infarction of conducting system, atheroma production, ST elevation, heart block and arrhythmia, (impulses cannot travel down left and right ventricle branches simultaneously), or heart failure, prolonged PR (type 1 heart block), nausea, shortness of breath, pain in head, jaws, arms
which type of coronary occlusion is called a widowmaker, and why?
LAD
high mortality rate
consequence of occlusion of right coronary artery
conduction of nodes affected, contractions become out of rhythm or slower, inefficient blood flow (ischaemia) and potential backflow
symptoms of occlusion of right coronary artery
chest pain, if complete block then heart muscle dies and MI results, pain radiating in arms, shoulders, jaw, neck or back, shortness of breath, weakness and fatigue
ways to reduce risk of heart problems
cut down alcohol intake
stop smoking
be more physically active
vaccination
how many units of alcohol per week?
14 units
effect of sympathetic stimulation on peripheral blood vessels
vasoconstriction to increase blood pressure
are peripheral blood vessels innervated by parasympathetic fibres?
no
the occlusion of which coronary artery is most likely to result in a fatal heart attack?
left main coronary artery
the occlusion of which coronary artery is most likely to result in a fatal heart attack and why?
left main coronary artery
supplies the largest area of heart muscle
which nerve supplies the pericardium?
phrenic
phrenic supplies the 3 p’s
pericardium, pleura, peritoneum
what is end diastolic volume?
total amount of blood in the ventricle just before systole
average stroke volume?
70ml
mitral valve stenosis
narrowing of the mitral valve
left atrium has to contract with more force to generate more pressure to overcome the valve stenosis
increase in left atrium pressure
what is the embryological ductus arteriosus?
connects the pulmonary artery to the aorta
what does the embryological ductus arteriosus become?
ligamentum arteriosum
what is the foramen ovale?
hole between the right and left atrium
what type of heart failure causes pulmonary oedema and why?
left heart failure
blood backs up in the pulmonary system
what type of heart failure causes peripheral oedema?
right heart failure
failure of both sides of the heart
biventricular failure
movement of oxygen and carbon dioxide in and out of the respiratory system
oxygen rich air from environment - nasal cavities - pharynx - trachea - bronchi - bronchioles - alveoli - oxygen and carbon dioxide exchange at alveoli - bronchioles - bronchi - trachea - pharynx - nasal cavities - carbon dioxide rich air to the environment
how is physiological dead space calculated?
anatomical (conducting) dead space + alveolar dead space
what is conducting/ anatomical dead space?
volume of the conducting airways
from the nose, mouth and trachea to the terminal bronchioles
what is the alveolar dead space?
comprises alveoli which are ventilated, but not supplied by the pulmonary arterial circulation
where is greatest resistance to air flow?
segmental bronchi
if diameter is doubled, how does resistance change?
decreases by 1/16
if diameter is halved, how does resistance change?
increases 16-fold
what is Poiseuille’s Law?
R = 8ul/pi x r^4
two types of pulmonary stretch receptors
slow and rapidly adapting
what is the Hering-Breuer reflex?
inhibits inspiration
smooth muscle response to stretch