ICS - microbiolgy Flashcards
define pathogen
Pathogen
Organism that causes or is capable of causing disease
Define Commensal
Commensal
Organism which colonises the host but causes no disease in normal circumstances
Define Opportunist Pathogen
Opportunist Pathogen
Microbe that only causes disease if host defences are compromised
Define Virulence/Pathogenicity
Virulence/Pathogenicity
The degree to which a given organism is pathogenic
Define Asymptomatic carriage
Asymptomatic carriage
When a pathogen is carried harmlessly at a tissue site where it causes no disease
what areas are open to bacterial colonistation
muscoal surfaces
The GI tract, lungs, bladder, kidnyes, urter, urethrer, gallbladder
out of thses, teh lungs and bladder should try and be bacterial free
what dhape is a cocus
spherical
what shap is a bacillus
rod
what colour is gram positive
purple
what color is gram negaitve
pink
what is a curved rod shaped bacteria
vibrio
what is teh name for spiral rod
spirochaete (sounds like a type of pasta)
what stain is for microbactrium
ziehl-neelsen stain (acid fast stain)
what are the differences between gram positive and gram negative bacteria
gram posiitve bacteria have a thick peptidoglygan layer and gram negative dont, they have a large lipoplysachoride (also known as endotoxin) layer instead
what are the two types of bacterial toxins
ENDOTOXIN
Component of the outer membrane of bacteria, eg lipopolysaccharide in Gram negative bacteria
EXOTOXIN
Secreted proteins of Gram positive and Gram negative bacteria
what is a toxoid
Toxoid is a toxin treated (usually with formaldehyde) so that it loses its toxicity but retains its antigenicity
what are teh features of an exotoxin
protien, specific action, strong antingencity, produced by gram + and - bacteria, and convertable into a toxoid
what are teh features of endotoxins
liposaccoride, non specific, produced only by gram negative, not convertable to a toxoid
in what 3 modes can bacteria gain new genetic information
conjugation - via a sex pilus
transformation - sent over in a plasmid
transduction - via phage (infected by a virus)
what are the three ways a bacterias DNAs can change
base substitution, deletion, insertation
what is obligate intracellular bacteria
bacteria that cannot be grown on an artifical media, only in human cells and tissues
what are the three tpes of obligate intracellular bacteria
rickettsia, chlamydia, coxiella
what are teh cypes of bacteria that can grwo on an artifical media and have no cell wall
mollicutes
what are the cocci, gram negative, anaerobic bacteria
veillonella
what are teh cocci, which are gram negative and aerobic
neisseria and moraxella
what are the cocci, gram positive, aerobic, bacteria
staphylococcus, streptococcus
what test is done to distuinguish between streptococccus and what are the three outcomes
Macconkey
beta heamolytic, alpha heamolytic, non heamolytic
what are the cocci, anerobic, gram posiitve bacteria
peptostrepococcus
how does staphylococcus often grow and how does streptococcus grow
in clusters, streptococcus grows in chains
what does coagulase mean
Coagulase: enzyme produced
by bacteria that clots blood plasma.
what are teh three most important staphylococcus, and are therse coagulase positive or negative
s. aureus (because it looks gold) is coagulase positive
s. epidermis is coagulase negative
s. saphrophyticus - negative
Staphylococcus’ normal habitiat is the nose and skin
what is the information about Staphylococcus aureus
Spread by aerosol and touch
carriers & shedders
Virulence factors
Pore-forming toxins (some strains)
a - haemolysin
Panton-Valentine Leucocidin ‘PVL’
Proteases
Exfoliatin
Toxic Shock Syndrome toxin
(stimulates cytokine release)
Protein A
(surface protein which binds antibodies in wrong orientation)
It causes wound infections on the skin (pyogenic)
impertigo, pneumonia, sceptacemia
it is also sotin mediated and can causes toxic shock and food poisnening
what is S.epidermidis
S.epidermidis
Infections are ‘opportunistic’
immunocompromised,
prostheses
Main virulence factor - ability to form persistent biofilms
S.saprophyticus
S.saprophyticus
Acute cystitis
haemagglutinin for adhesion
urease
what is heamolysis
destruction of red blood cells (in thsi case by bacteria to access teh nutrienst)
what test is done after teh alpha heamolytic and what are teh bacteria found?
optochin test
resistant - viridans strep
sentitive - s. pneumoniae
what are the beta and gamma heaolysis bacteria, and what lancefield group are they?
beta - complete lysis
e.g. S.pyogenes
(ABCG)
gamma - no lysis
S.Boris and Enterococcus (not a streptococcus)
(D)
what is Antigenic sero-grouping and 2 exmaples
Antigenic sero-grouping (for Beta haemolytic strep only)
It is done by using teh lancefiels micobead agglutination test, to put them into groups
Group A - S.pyogenes
thraot, skin, post partum
Group B - S.agalactiae neonatal infections
what is teh Lancefield microbead agglutination test
Antiserum (antibodies) made that recognise each group
Tagged to tiny plastic beads
added to a suspension of bacteria
Antibodies bind bacteria and beads clump together
Visible to naked eye
what are the Infections caused by S.pyogenes
Respiratory
Tonsillitis & pharyngitis
Otitis media
Skin and Soft tissue
Wound infections
Impetigo
cellulitis
puerperal fever
Scarlet fever
SPeA and M type
Complications
rheumatic fever
glomerulonephritis
what are virulance factors
Virulence is described as an ability of an organism to infect the host and cause a disease. Virulence factors are the molecules that assist the bacterium colonize the host at the cellular level. These factors are either secretory, membrane associated or cytosolic in nature.`
what are the S.pneumoniae virulence factors
Capsule
polysaccharide (84 types), antiphagocytic
polysaccharide vaccine ‘PPV’ 23 types
conjugate vaccine ‘PCV’ 13 types
Inflammatory wall constituents
teichoic acid (choline)
peptidoglycan
Cytotoxin
pneumolysin
describe teh Viridans group streptococci
- haemolytic (or non-haemolytic)
Optochin resistant
Some cause dental caries & abscesses
Important in infective endocarditits
S. sanguinis, S. oralis
Cause deep organ abscesses (e.g. brain, liver)
Most virulent are the “milleri group”
S.intermedius, S.anginosus, S.constellatus
what are the S.pyogenes virulence factors
Exported factors
Enzymes
Hyaluronidase
- spreading
Streptokinase
- breaks down clots
C5a peptidase
- reduces chemotaxis
Toxins
Streptolysins O&S
-binds cholesterol
Erythrogenic toxin
-Streptococcal pyrogenic toxin e.g. SPeA – exaggerated response
Surface factors
Capsule - hyaluronic acid
M protein – surface protein
(encourages complement degradation
what are three aerobic gram posiitve bascilli
Listeria monocytogenes
Bacillus anthracis
Corynebacterium diphtheriae
what are three anerobic gram posiitve bacteria
all from teh clostridia species
C. tetani - causes tetnus
C. botulinum - causes botulism
C. difficile - causes antibiotic assocaited diarrhea, pseudomembranous colitus
what makes a gram negative bacteria so special
it has two membranes, a phospholipd and a lipopolysacchoride
what are teh two types of virulence factors
coloinsation factors - adhesions, invasins, nuterin aquesition, defence against teh host
toxins - secreted protiens that daeg
what does peritrichous flagella mean
the entire surface is coverd by flagella
what are proteobacteria
They come from the enterobacteria family
they are rods are noramlly are motile with pertrichous flagella
some specied colonise in teh intestinal tract
what is a MacConkey-lactose agar, how does it work, and what is an example of a lac positve and a lac negitive
this is a tye of agar that is pH senstiive and will turn red when the bacteria used lactose as theri food as it will make lactic acid, whihc has a low pH. Therefore if it is lac positive such as E Coli, it will be red and if it Lac negative, such as samonella or shigella, it will not show up red.
what is a serotype
it is a way of catogrinsing bacteria based on teh aino a cids and carbohydrates in teh cell surface.
therre can be variation inbetween varietns of a single specied and different strains of teh same species
Antigenically distinct variants of a single species are referred to as
‘serovars’, i.e. E. coli O157:H7 (an enterohaemorrhagic E. coli; EHEC) and E. coli
O45:K1:H7 (a neonatal meningitis-associated E. coli, NMEC) are different serovars.
what are teh most commn infections cased by pathogenic Escherichia coli strains
Wound infections (surgical)
(ii) UTIs (cystitis; 75-80% of ♀ UTIs - faecal source or sexual activity;
catheterisation - most common type of nosocomial infection)
(iii) Gastroenteritis
(iv) Travellers’ diarrhoea
(v) Bacteraemia (sometimes leading to sepsis syndrome)
(vi) Meningitis (infants) - rare in UK
what is an example of how ecoli cause diohrea
teh toxin secreted causes teh pump in teh intestinal cells to be turned on and Cl- ions to be pumped out en mass
thsi causes water to follow via osmosis whihc causes diorhea
what is dysantry
bloody dihoreah containg pus, blood and mucus
what is shigella
Very closely related to Escherichia (= “E. coli + virulence plasmid”)
Four species: S. dysenteriae, S. flexneri, S. boydii, S. sonnei
Shigellosis: severe bloody diarrhoea (bacillary dysentery)
S. dysenteriae causes most severe form.
S. sonnei most prevalent in developed world.
how does shigella invade the colonic mucosa
it is incredibly acid tolerant
it enters though eh M cells - antigen sampling cells
it then moves laterally though all of ghe gap junstions between cells and kills te enterocytes
It also produces shiga toxin, which can traget teh kidneys and causes heamolutic uraemic kidneys
this causes microvascular thromobosis in teh kidneys and causes kidney faliure
what are teh two types of samonella
S. enterica - responsible for salmonellosis
>2,500 serovars*
S. bongori - rare (contact with reptiles)
what are the three forms of salmonellosis caused by S. enterica:
- Gastroenteritis/enterocolitis (serovars Enteritidis and Typhimurium)Frequent cause of food poisoning (milk, poultry meat & eggs)
Second highest no. of food-related hospitalisations/deaths (UK)
6-36 hr incubation period, resolves (~7 days)
Localised infection, only occasionally systemic - Enteric fever - typhoid/paratyphoid fever (serovars Typhi and Paratyphi)Poor quality drinking water/poor sanitation
Systemic disease
~20 million cases, ~200,000 deaths/year (globally) - Bacteraemia (serovars Cholerasuis and Dublin)Uncommon
what is the process of pathogensis of salmonellosis
Ingestion of contaminated food/water - high I.D. (~106) (‘faecal-oral route’)
Invasion of gut epithelium (small intestine)
Transcytosed to basolateral membrane
Enters submucosal macrophages
Intracellular survival/replication
what is heamophilius influenza
a human parasite that is carried in the nasopharyngeal of many people,
what are 5 oportunistic infections
meningitus, bronchopneumonia, pneumonia in CF, COPD and HIV patients
what is blood agar and choclate gar
blood - agar jelly mixed with horse blood
choclate agar - blood agar heated to lysis teh RBCs
what does the capsule of H.influenza do
penatrates the nasopharyngea epithelium
resistance to phagocytosis and teh complenent system
what does fastidiuos bacteria mean
Microorganisms that are difficult to grow in the laboratory because they have complex or restricted nutritional and/or environmental requirements.