I - Generalities Flashcards
Live in extremes of environment, not physiologic to humans, not pathogenic in humans (won’t survive)
Archaebacteria
Arcahebacteria that withstand temps >100C, whose enzymes are stable at such extreme temps
Hyperthermophiles
Enzyme used in PCR derived from Thermus acquaticus
Taq
Archaebacteria that live in extremes of pH, ie acidic
Hyperacidophiles
Archaebacteria that live in extremely salty conditions, can withstand osmotic pressure
Halophiles
Archaebacteria that produce methane
Methanogens
Ribosome size for prokaryotes
70S (50S+30S)
Ribosome size for eukaryotes
80S (60S+40S)
Theory which explains presence of mitochondria and chloroplasts (cyanobacterium) in animal and plant cells, respectively
Endosymbiont Theory
Model organism, prokaryotes
E. coli
Model organism, fungus
Saccharomyces cervevisae
Model organism, plant
Arabidopsis thaliana
Model organism, nematodes
Caenorhabditis elegans
Finite and determined number of cellular divisions in this organism makes it a good subject for study of aging
Caenorhabditis elegans
Model organism, genetics, stem cell
Drosophilia melanogaster
Model organism, mammals
Mus muluscus
Cell wall, plants
cellulose
Cell wall, fungi
chitin
Cell wall, diatoms
silica
Cell wall, bacteria
peptidoglycan
Cell wall, animals
none
Cell wall, anaerobes
Pseudopeptidoglycan
Obligate intracellular parasites of plants
Viroids
Mobile genetic elements that cause genetic mutations in genes into which they insert, code for drug-resistant enzymes, toxins; “jumping genes”
Transposons
Transposon transposition, forms new copy followed by DNA replication
Replicative transposition
Transposon transposition, DNA excised from site without replication
Direct transposition
Abnormal isoforms of PrPc protein, modify folding of normal prion-like proteins and has high beta-sheath content, insoluble to detergent, resistant to protease
Prions (PrPres/PrPsc)
Morphologic apperance of prion diseases in the brain
Spongiform encephalopathy
Human prion disease, characterized by dementia, involvement of cerebellym, brainstem, spinal cord, manifesting as myoclonus, extrapyramidal signs, cereballar signs
Creutzfeldt-Jakob disease
Immotile microorganisms (Virus, Bacteria, Fungi, Protozoa)
Virus, Fungi
Replication, virus
Intracellular host
Replication, bacteria
Binary fission
Replication, fungi
Budding, mitosis
Replication, protozoa
Mitosis
Pathogenesis of human prion disease
Insoluble PrPsc produces aggregates that kill the cell due to its beta-conformation, versus PrPc which has a soluble conformation
3 bacterial shapes
cocci, bacilli, spirochetes
3 arrangements of cocci
diplo, strepto, staph
Smallest bacteria, no peptidoglycan; instead, sterols
Mycoplasma spp.
Largest bacteria, overall
Thiomargarita namibiensis
Largest baceria, medically important
Borrelia burgdorferi (Lyme disease)
Site of action of penicillins on peptidoglycans
Penicillin Binding Protein (PBP)
Enzyme, cleaves glycan backbone on peptidoglycans (B 1–>4)
Lysozyme
Proteins, facilitate passage of hydorphilic molecules into cells,
Porin
Lipid unique to G(+)
Teichoic acid
Unique to G(-)
Lipopolysacchardie, endotoxin
Only G(+) with endotoxin
Listeria monocytogenes
Mechanism of inflammation in G(-)
IL-1 and TNF induced by Lipid A and OO antigen in endotoxin layer
Gram staining, steps
Primary stain, Mordant, Decolorize, Secondary Stain
Gram staining, dyes
V-I-A-S; Crystal Violet, Iodine, Acetone, Safranin
G(+) color
purple
G(-) color
red
Mycobacteriae stain
Acid-fast stain
Spirochete/Treponema stain
Darkfield Microscopy
Mycoplasma stain
None, serology (no peptidoglycan layer)
Legionella stain
Silver stain, G(-) with poor red uptake
Chlamydiae stain
None, inclusion bodies (intracellular)
Rickettsiae stain
Giemsa/tissue stain (intracellular)
2 intracellular bacteria
Chlamydia, Rickettsiae
Bacteria not seen in gram stain
Treponema, Rickettsia, Mycobacteriae, Mycoplasma, Legionella, Chlamydia
Essential structural component in bacteria; invagination of plasma membrane
Mesosome
Essential structural component in bacteria; includes B-lactamases
Periplasm/ periplasmic space
Mediates adherence of bacteria to surfaces
glycocalyx
Non-essential structural component of bacteria; resistant to heat and chemicals, coated in keratinlike coat, dipicolinic acid; protects genetic material, reactivated upon favorable conditions
Spore
Codes for genes for antibiotic resistance / virulence factors, non-essential, dsDNA, extrachromosomal
Plasmid
All bacterial capsules composed of polysaccharide except
Bacillus anthracis (polypeptide of D-glutamate)
Flagella movement in eukaryotes
Wave/whip-like
Flagella movement in prokaryotes
Rotatory
Transmissible plasmids transfer DNA via
Conjugation, sex pilus, includes enzymes and genes for pilus
4 Stages of bacterial growth
Lag, Log, Stationary, Death
B-lactams act on which bacetrial growth phase
Log
Bacterial antioxidants
Catalase, Superoxide dismutase, peroxidase
Antioxidant, produces H2O2 and O2
Superoxide dismutase
Antioxidant, produces water and O2
Catalase
Antioxidant, produces water only
Peroxidase
Obligate aerobes
Nocardia, Neisseria, Pseudomonas, Mycoplasma, Mycobacteria, Bacillus cereus, Bordetella, Brucella, Legionella, Leptospira
Microaerophiles
Helicobacter, Spirochetes (Borrelia, Treponema) Campylobacter, Streptococcus
Facultative Anaerobes
Staphylococcus, Bacillus anthracis, Corynebacterium, Listeria, E.coli, Non-pneumonia Mycoplasma
Aerotolerant anaerobes
Propionibacterium, Lactobacillus vaginalis
Obligate anaerobes
Actinomyces, Bacteroides, Clostridium
Movement of gene from a silent non-coding site, to an active site where transcription occurs
Programmed Rearrangement
End effect of programmed rearrangement
Antigenic variation, evade inflammation
DNA transfer via pilus
Conjugation
DNA transfer via phage
Transduction
DNA transfer via uptake by cell
Transformation
Two cycles of transduction
Lytic, Lysogenic
Process by which normal flora occupy receptor sites preventing pathogens from binding and causing disease
Colonization resistance
Normal flora, skin
Staph. Epidermidis
Normal flora, nose
Staph. Aureus
Normal flora, mouth
Viridans streptococcus
Normal flora, plaque
Streptococcus mutans
Normal flora, colon
Bacteroides, E.coli
Normal flora, vagina
Lactobacillus vaginalis, E.coli, Strep. Agalactiae