Exam 4 Stahelin Flashcards
Replication cycle of HIV steps
- Viral attachment and entry
- Penetration
- Uncoating
- Nucleic acid synthesis
- Integration/Transcription
- Viral protein synthesis
- Packaging and assembly
- Viral release
Why is there Resistance to HIV drugs
- HIV polymerase HIV prone
- RTs are unable to suppress viral replication
- Large amount of viruses are present
HIV drug resistance rate
Rate of mutations is inversely related to serum concentration
What does a low genetic barrier for a drug mean
It is easy for the virus to become resistant
What does a high genetic barrier for a drug mean
It is hard for a virus to become resistant
What drugs block viral attachment and entry
- enfuviritde
- docosanol
- maraviroc
- palivizumab
What drugs block viral penetration
interferon-alfa (HBV, HCV)
What drugs block viral uncoating
Amantadine, rimantadine (influenza)
What drugs block viral nucleic acid synthesis
NRTIs (HIV)
NNRTIs (HIV)
Nucleoside/nucleotide analogs (HSV, HBV)
What drugs block viral integration (retroviruses) transcription
INSTIs (HIV)
What drugs block viral protein synthesis
PIs (HIV, HCV)
What drugs block viral release
Neuraminidase inhibitors (influenza)
Why do HIV medications have selective toxicity towards the virus
Viruses have different proteases and polymerases
What drugs blocks chemokine and CD4 receptors
Maraviroc
What drug blocks attachment and fusion of HIV to host cells
Enfuviritide
What drugs block reverse transcription
NRTIs
Non-NRTIs
What drug blocks integrase
raltegravir
what drugs block viral maturation
maturation
How does HIV fuse/enter host cell
HIV gp120 binds to CD4 on target cell, which causes conformational changes in gp120 exposes region
Exposed region binds to cytokine receptor (CCR5 or CXCR4 depending on the strain of HIV)
What drugs are HIV entry and fusion inhibitors
Enfuviritide
Maraviroc
Enfuviritde MOA
binds to HIV gp41 and blocks gp41 conformation change needed for fusion
Maraviroc MOA
binds to human CCR5 and causes conformational change that blocks GP 120 binding
What patients can take maraviroc
Patients with HIV strains that utilize CCR5 because it is a selective CCR5 antagonist
What is enfurviritide active against
Only HIV-1
Resistance to enfuvirtide
Mutation within a 10 amino acid motif in gp41
Reverse transcriptase activities/types
- RNA dependent DNA polymerase
- Ribonuclease H
- DNA-dependent DNA polymerase
What do RTs do
- Copies plus-strand RNA to produce minus-strand DNA
- Degrades RNA template from RNA-DNA hybrid
- Synthesizes plus-strand DNA from minus-strand DNA template
What do NRTIs interfere with
RNA-dependent DNA polymerase
DNA-dependent DNA polymerase
RT DNA polymerase mechanism
RT catalyzes formation of phosphodiester bond between 3’ OH of last nucleotide added and the 5’ phosphate of the next nucleotide
Pyrophosphate is released –> provides energy needed for reaction
NRTIs mechanism
Nucleoside analogs that lack 3’ OH: causing competitive inhibition of reverse transcriptase and is a DNA chain terminator to inhibit elongation
What are NRTIs active against
HIV-1 and HIV-2
Are NRTIs used in combo or alone
Combo: 2 NRTIs plus NNRTI or PI or integrase inhibitor
Preferred NRTI combos
Tenofovir and emtracitabine
Abacavir and lamivudine
Are NRTIs ok to use as is
No
All must be activated by cellular kinases to triphosphate form (or equivalent)
Deoxymethine analogs NRTIs
Azidothymidine
Stavudine
Deoxyadenosine analogs NRTIs
didanosine
tenofovir
deoxycytidine analogs NRTIs
lamivudine
emtricitabine
deoxyguanosine analogs NRTIs
abacavir
What is special about the structure of tenofovir
methyl group
open ring
What is special about the structure of emtricitabine
sulfur and fluorine groups
Is TDF ok to be used as is
No: prodrug converted to tenofovir
2 phosphorylation steps required, but phosphonate cannot be cleaved
TDF structure
acyclic nucleoside phosphonate analog of adenosine
Advantages of tenofovir
Long intracellular half-life
Different resistance profile
Retains some activity against mutant RT
Highly selective for HIV RT over human cellular and mitochondrial DNA polymerases
Problems with TDF
Plasma esterases can activate TDF to TFV, which is eliminated by kidney
Causes greater loss of kidney function and a risk of acute renal failure
Advantage of using TAF over TDF
Fewer side effects since less TFV gets into the plasma, but associated with higher lipid levels compared to TDF
Different activation pathway of TAF allows for 10-fold lower dose compared to TDF
Why is TAF advantageous for HIV
Better accumulation in lymph nodes
Higher intracellular concentrations
How is TAF converted to TFV
TAF contains phenol and alanine isopropyl ester to make the charge on the phosphonate
Phosphonamidase reaction leads to TFV
How are nucleosides and NRTIs must be activated
To their triphosphate forms by cellular kinases
What do NRTIs have a higher affinity for
HIV RT than for cellular DNA polymerases
What are the two types of NRTI resistances
Discriminatory mutations
Excision mutations
what are discriminatory mutations
mutations that selectively impair the ability of reverse transcriptase to incorporate analogues into DNA
AKA helps the RT to distinguish between normal dNTPs and NRTIs
what are excision mutations
ATP molecular mediates the removal (excision) of a nucleoside analogue after it has been incorporated
AKA promote removal of NRTIs after they’ve been incorporated into the growing chain
What are NRTIs selective for
HIV RT over human DNA polymerase alpha and beta
What do some NRTIs inhibit
human DNA polymerase
AE of NRTIs
inhibits human DNA polymerase
Leads to anemia, granulocytopenia, lactic acidosis, lipoatrophy
Abacavir black box warning
Hypersensitivity Reaction- highly associated with the HLA-B*5701 allele, recommend testing prior to treatment
NNRTIs MOA
bind directly to site on RT at the hydrophobic pocket near catalytic site but do NOT compete with nucleotides for binding- noncompetitive inhibitors so a single mutation in the binding site can promote resistance
Do NNRTIs need to be phosphorylated
No since they are no incorporated into the DNA chain
What do NNRTIs block
RNA and DNA dependent DNA polymerase activities
What are the second generation NNRTIs
etravirine
rilpivirine
What is special about second generation NNRTIs
designed to be inherently flexible so it can bind in multiple orientations, which allows to bind to mutants that are resistant to other NNRTIs
AE NNRTIs
rash
drug-drug interactions
What are NNRTIs metabolized by
CYP3A
What do NNRTIs not bind to
cellular DNA polymerases
NNRTIs and NRTIs mutations relationship
Mutations that confer resistance to NNRTIs do not causes resistance to NRTIs
What drug is an integrase inhibitor
raltegravir
Ralegravir MOA
inhibits insertion of HIV DNA into the human genome by blocking the strand transfer step
integrase function
inserts HIV DNA into host cell DNA by 3’ processing and strand transfer
Ralegravir MOA
chelates metal ions in the integrase and stabilizes the enzyme-DNA complex
Integrase inhibitor resistance
caused by primary mutations that reduce INI susceptibility
Does Ralegravir have low or high genetic barrier
low
Which INI has a higher genetic barrier
dolutegravir
Do you use elvitegravir alone or in combo
Combo with cobicistat to boost elvitegravir concentrations by inhibiting metabolism by CYP3A4
How does HIV become resistant to INIs
primary mutations that reduce INI susceptibility
secondary mutations further decrease virus susceptibility and/or compensate for the decreased fitness
HIV proteases role
cut itself free and the cuts 4 other enzymes free from the long precursor
-peptide bond cleavage via hydrolysis reaction reaction
How do protease inhibitors work
they have a replaced amide bond with a non cleavable linkage –> AKA peptidomimetic
Causes change in conformation of the protease to close it
PI and CYP3A4 relations
PIs can cause increased levels of other CYP3A4 metabolized drugs
Delavirdine increases indinavir and saquinavir levels
Which PI is not an peptidomimetic
tipranavir
Which antiviral drug is the most potent inhibitor of CYP450s
ritonavir
Ritonavir use
Can be used in sub-therapeutic doses for PI boosting
What is PI boosting
Use low doses of ritonavir to inhibit CYP3A4 –> blocking metabolism of other PIs
Pros of PI boosting
Increases trough levels of PIs
Reduces emergence of resistant viruses
Improves compliance
What drugs are INIs
- Saquanivir
- Ritonavir
- Lopinavir
- Cobicistat
- Atazanavir
- Darunavir
- Tipranavir
Role of cobicistat
inhibit cyp3a4
what drugs reduce atazanavir concentrations
efavirenz and tenofovir
Darunavir unique features
- makes extensive hydrogen bonds with protease backbone
2. inhibits HIV protease dimerization
Mutant HIV protease and PIs
DRV hydrogen-bonds with the peptide backbone so it is less affected by changes in amino acid side chains
DRV can inhibit both wildtype and mutants that are resistant to other PIs
Which PI is nonpeptidic
tipranavir, which allows use in those resistant to DRV
Its a CYP3A4 substrate and inducer
How do resistance to protease inhibitors occur
Modify contacts between protease and inhibit to bind tightly
PI AEs
Hyperlipidemia
Insulin resistance and diabetes
Lipodystrophy
Elevated liver function tests
Preferred INSTI based regimens
- DTG + ABC/3TC if HLA (-)
- DTG (QD) + tenofovir/ftc
- EVG/COBI + tenofovir/ftc
- RAL + tenofovir/ftc
Acyclovir MOA
Competitive inhibitor of viral DNA polymerase by competing with dGTP, causing DNA polymerase to become bound to template irreversible
is acyclovir a chain terminator?
Yes because it is incorporated into DNA
Acyclovir spectrum of activity
Active against HSV-1, HSV-2 and VZV
Resistance to acyclovir
Mutations in viral thymidine kinase and viral DNA polymerase
What is valacyclovir
L-valyl ester of acyclovir, which is rapidly converted to acyclovir in intestine and liver
Which drug has better efficacy: acyclovir or valacyclovir?
valacyclovir