Enzymes Flashcards

1
Q

What are enzymes?

A

Proteins that act as a catalyst

- have a tertiary structure

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2
Q

Do enzymes participate in chemical reactions?

A

No- they can be used over and over again

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3
Q

What is the hydrolysis enzyme catalyzed reaction

A

2H2O2 -> 2H2O + O2

- catalase over the arrow

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4
Q

Define active site

A

The binding site for substrate

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5
Q

Compare the shape of a substrate and the active site

A

Have similar shape

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6
Q

Define substrate

A

Any molecule that is recognized by an enzyme and binds to it

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7
Q

What is formed when the substrate bonds to the enzyme?

A

Enzyme- substrate complex

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8
Q

What happens to the enzyme in a catalyzed reaction?

A

It does not get used up and can be used for another reaction

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9
Q

What happens to the enzyme active site when binding with substrate?

A

It changes its shape so it is a perfect fit to bind

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10
Q

What is the substrate apart of when bonding to active site?

A

Tertiary structure

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11
Q

Where is the enzyme written in a chemical reaction and why

A

Above the arrow because it doesn’t get used up

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12
Q

Define induced fit model

A

A model of enzyme activity that describes how an enzyme active site changes shape to better accommodate for a substrate
- forms complementary shape

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13
Q

What does it mean if you’re lactose intolerant?

A

You don’t have the enzymes (lactase) required to break down lactose

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14
Q

Define activation energy

A

The energy required to start a chemical reaction. All chemical reactions require a certain amount of activation energy.
- usually heat

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15
Q

How do enzymes affect activation energy and why?

A

Enzymes lower activation energy of chemical reactions, making them occur more readily (faster)

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16
Q

What does the enzyme do when it lowers activation energy?

A

Breaks the barrier so it’s easier for substrate to turn into product

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17
Q

Define a co-factor

A

A non protein atom or molecule that binds to an enzyme and is essential for catalytic activity
- (essential for enzymes to work)

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18
Q

Give examples of co-factors

A

Minerals

Ex. Mg, Fe (iron in hemoglobin), K, Cu, Zn, Na

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19
Q

Define co- enzyme

A

An organic molecule that acts as a co-factor

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20
Q

Give examples of co- enzymes

A

Vitamins (A and B)

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21
Q

What is the difference between vitamins and minerals,

A

Minerals are inorganic, vitamins are organic

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22
Q

Why is the co- enzyme important?

A

Without it the substrate cannot bind

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23
Q

How does enzyme concentration affect enzyme rate?

A

The more enzymes the faster the rate

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24
Q

How does substrate concentration affect enzyme rate?

A

The more substrate the faster the rate

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25
Why does the curve flatten in an enzyme concentration graph?
The substrate ran out | - low in concentration
26
Why does the curve flatten in a substrate concentration graph?
Rate stops increasing because enzymes ran out | -low in concentration
27
How does pH affect enzyme rate?
When a substance moves away from its optimal pH level, the proteins denature and eventually drops to 0
28
How does temperature affect enzyme rate?
When you move away from the optimal temperature, the protein either denatures (too hot) or the enzymes move too slow (too cold)
29
Define enzyme inhibitor
Foreign agents that affect the enzymes ability to work | ex. venom or poison
30
What do enzyme inhibitors do?
They lower the rate at which an enzyme catalyzes a reaction
31
How do enzyme inhibitors lower the rate of a catalyzed reaction?
They bind to an enzyme and decrease its activity
32
Where could enzyme inhibitors bind?
To the active site or other critical sites located elsewhere in the structure
33
Define competitive inhibitor
Competitive inhibitor molecule resembles substrate and competes with the substrate for the active site
34
Define noncompetitive inhibitor
Binds at the site other than the active site, causing the enzyme's shape to change so that substrate cannot bind to active site
35
Is a competitive or non competitive inhibitor more dangerous?
The noncompetitive inhibitor is more dangerous because it shuts down the active site so that substrate cannot bind
36
What determines if the substrate or inhibitor gets the spot on the active site?
Depends on if there is more substrate or more inhibitor
37
What does cyanide do to the body?
Effects the mitochondria which prevents the body from using oxygen
38
What is arsenic?
Rat poison
39
What do pesticides do?
Chemically inhibit insect's enzymes
39
What do pesticides do?
Chemically inhibit insect's enzymes
40
What happens if someone has poison?
They pump the stomach to get rid of the inhibitor (empty the stomach)
41
Define allosteric
Can be controlled
42
Define allosteric regulators
Molecules in the body that naturally regulate enzyme activity by binding to an allosteric site on the enzyme
43
Are allosteric regulators foreign?
No, they belong in your body
44
What does it mean to naturally regulate an enzyme?
Control the enzymes by speeding them up or slowing them down
45
What two things could allosteric regulation do?
Inhibit or stimulate enzyme activity
46
Describe how an allosteric regulator may stimulate enzyme activity
1. enzyme binds to allosteric activator 2. binding activator converts enzyme to high affinity state 3. in high affinity state, enzyme binds substrate
47
Describe how an allosteric regulator inhibits enzyme activity
1. enzyme binds allosteric inhibitor 2. binding inhibitor converts enzyme to low affinity state 3. substrate is released
48
Why would the body want enzymes to work faster?
For the bodily functions to work
49
Why would the body want enzymes to slow down?
There is too much product
50
Define feedback inhibition
When the allosteric inhibitor is the final product in a biochemical pathway, it inhibits the enzyme that catalyzes the FIRST reaction in the pathway
51
What happens if product is scarce?
The inhibition is reduced and the rate of the reaction increases
52
Define biochemical pathway
A set of interconnected chemical reactions in which the substrate of the first reaction becomes the product. This product now becomes the substrate of the next reaction and so on...
53
Which enzyme is allosteric in the biochemical pathway?
The first one
54
What happens when there is a lot of product?
Enzyme 1 is inhibited and the pathway stops
55
What happens if there is too little product?
The enzyme 1 is not inhibited anymore and the pathway restarts
56
How to determine the number of reactions in a biochemical pathway?
The number of arrows
57
What is each reaction in a biochemical pathway controlled by?
A different enzyme
58
What is the purpose of a biochemical pathway?
To make the final product
59
Where is pepsin used and what is the optimal pH
In the stomach, 2
60
Where is trypsin used and what is the optimal pH
Intestine, 8
61
Where is amylose used and what is the optimal pH
In the mouth, 7