dna replication 4 Flashcards

1
Q

what does primase synthesise and when will it produce this

A

a rna primer when attached to helicase

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2
Q

how to we prevent the ssdna from reclosing up again

A

single-stranded binding protein will bind to prevent closing

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3
Q

what will ssb proteins form and why is this useful

A

a tetramer meaning the outermost ssb proteins will be easier to remove by the polymerases

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4
Q

what does the primer and the ssb protein trigger and where

A

the arrival of the pol III holoenzyme and at the 3’ end

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5
Q

what are the three parts of the pol III holoenzyme

A

pol III core, tau proteins, clamp loader

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6
Q

what does the clamp loader load onto the protein and what then binds to this

A

beta clamp, the pol III core binds to this

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7
Q

what detaches the beta clamp from the clap loader

A

atp hydrolysis

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8
Q

what is the beta clamp encoded by and what does it give to the poll II core

A

dnaN to produce a ring dimer
it gives processivity

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9
Q

what is formed when the pol III catches up to the helicase

A

replisome

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10
Q

what is a replisome, where is it located and how big is it

A

combination of the pol III holoenzyme and the primasome
it is at the replication fork
it is around 50 nm

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11
Q

why does the lagging strand start to loop back on itself

A

as more ssdna is created, it loops back and this allows the primer to work

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12
Q

when will the pol III core bind on the lagging stand

A

when enough ssdna has emerged

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13
Q

what does helicase and pol III form

A

trombone model

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14
Q

when will the Okazaki fragment stop being produced

A

when the poll III core meets the originally added primer which is 5’ to 3’ so it stops as it cannot process dna

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15
Q

what happens when the first Okazaki fragment is made and what happens to poll III core

A

primase will rebind and add helicase back on and adds on another primer
it will release the strand

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16
Q

what are the two enzymes that edit the lagging strand

A

pol I and dna ligase

17
Q

what are the two proteins that allow termination

A

ter and tus

18
Q

how do ter and tus work

A

they are orientation-specific, only allowing movement in one direction, once each strand gets to the centre it cannot continue

19
Q

what happens when the fork reaches ter-tus complex in the wrong direction

A

helicase will stall

20
Q

what removes the supercoiling until the last 200 bps

A

dna gyrase

21
Q

what removes the final 200bps of supercoiling

A

topoisomerase 4

22
Q

what adds methyl onto the GATC sequences and where does it add it

A

dam and onto the adenosine

23
Q

what is the difference between an old DNA strand and a newly replicated one

A

old are both methylated
new is hemimethylated

24
Q

what binds to a hemimethylated sequence and why is this important

A

seqA protein
- it prevents dnaA from binding and it binds this DNA to the membrane

25
Q

what will happen to an unmethylated stand of dna

A

they will replicate normally