control of gene expression in eukaryotes Flashcards

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1
Q

T or F: eukaryotes use activators and repressors

A

true

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2
Q

T or F: the mechanism for regulation of gene expression in eukaryotes is the same complexity as it is in prokaryotes

A

false; the mechanism in eukaryotes is much more complex than in prokaryotes

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3
Q

why is transcription regulation more complex in eukaryotes

A

the cis-regulatory sequences of regulators are spread over longer stretches of DNA called gene control region

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4
Q

what is a gene control region

A

a region that contains the info for transcription regulation

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5
Q

do transcription regulators appear alone or in groups

A

in groups

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6
Q

for transcription regulation, do we need few or many regulators

A

many

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7
Q

other than GTFs and regulators, what type of intermediate proteins are involved

A

coactivators and corepressors

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8
Q

T or F: coactivators and corepressors bind to DNA

A

false, they bind to the activator or repressor

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9
Q

what two models were initially proposed to answer how cis-reg sequences play a role in regulation if they’re so far from the promoter

A

scanning model

DNA looping model

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10
Q

describe the DNA looping model in transcription initiation

A

direct interactions between regulators bound at cis-reg sequences and the distant promoters were proposed to stimulate RNA pol

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11
Q

describe the scanning model in transcription and initiation

A

RNA pol (or a regulator) was proposed to bind at a regulatory sequence and then slide along DNA until it reached the promoter

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12
Q

describe the experiment that was done to determine which model was true: scanning model or DNA looping model

A

used a cis-reg sequence on one piece of DNA and a gene with its promoter on a separate piece. The gene was not expressed when the pieces were separate. When linked with a protein linker, the gene was still not expressed because it got in the way of RNA pol, therefore DNA looping is true and scanning is not

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13
Q

where do activators bind

A

cis-reg sequences called enhancers

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14
Q

are enhancer sequences long or short

A

long

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15
Q

how long are enhancers

A

50-200 bp

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16
Q

where are enhancers located

A
  • up to 50 kb upstream or downstream of the start of transcription
  • within an intron
  • downstream of the final exon
17
Q

list the 4 ways in which activators enhance transcription

A
  1. promotion of another regulator
  2. use DNA looping to bind to GTF or RNA pol = quicker assembly on the promoter
  3. attract coactivators
  4. eliminate the pausing of RNA pol
18
Q

provide an example of a major coactivator that we see

A

the mediator protein

19
Q

what is the function of the mediator protein

A

aids in the assembly of proteins at the promoter, helps other coactivators communicate with GTFs and RNA pol

20
Q

T or F: heterochromatin is hard to transcribe

A

true; it’s highly condensed

21
Q

to combat the difficulties of heterochromatin transcription, what types of proteins do we use

A

coactivators

22
Q

how can coactivators help with heterochromatin transcription

A

they remodel nucleosomes, and remove/replace/modify histones

23
Q

what do repressors do

A

they act to turn off a gene that’s being transcribed

24
Q

list the 4 mechanisms that repressors do to stop transcription

A
  1. block activator sites
  2. mask activator’s surface
  3. bind to GTFs before activator can
  4. recruit a corepressor that remodels nucleosomes back to pre-trans state or changes the histone tails back to pre-trans state