Citric Acid Cycle (Deevska) Flashcards

1
Q

3 names of Citric Acid Cycle

A

Krebs cycle, citric acid cycle, TCA cycle

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2
Q

Where does TCA cycle intersect with other metabolic pathways?

A

Catabolic pathways- breakdown of amino acids provides TCA cycle intermediates
Anabolic- some TCA intermediates feed into making other amino acids.

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3
Q

What provides most of the energy in the TCA cycle?

A

NADH and FADH2. These produce ATP through oxidative phosphorylation…
located in mitochondrial matrix very close to ETC…

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4
Q

List the steps of TCA cycle…

A

Pyruvate–Acetyl CoA+Oxaloacetate–Citrate–Isocitrate–Alpha-ketoglutarate–Succinyl CoA–Succinate– Fumarate–Malate–Oxaloacetate…

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5
Q

List the irreversible steps of TCA cycle…

A
  1. Acetyl CoA+Oxaloacetate to Citrate via Citrate synthase
  2. Isocitrate to Alpha-Ketoglutarate via Isocitrate Dehydrogenase
  3. alpha-ketoglutarate to Succinyl CoA via alpha-ketoglutarate dehydrogenase complex
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6
Q

What are the 5 different cofactors and what vitamin are they derived?

A

Thaimine pyrophosphate, TPP (from Thiamine, Vit B1)
Lipoamide (synthesized in human cells)
Coenzyme-A (CoA) (from pantothenic acid, vitamin B5)
FAD (from riboflavin, vitamin B2)
NAD+ (from nicotinamide, vitamin B3/niacin)

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7
Q

What 5 molecules activate PDH?

A
Pyruvate
NAD+
ADP
Ca2+ (muscle)
CoA
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8
Q

What 3 molecules deactivate PDH?

A

Acetyl CoA
NaDH
ATP

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9
Q

What is the goal of steps 1,2,3, and 4?

A

Goal is to degrade Acetyl CoA…

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10
Q

Citrate is a feedback inhibitor of what?

A

PFK-1 Phosphofructokinase-1 used in glycolysis

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11
Q

Citrate is a precursor for ______ synthesis?

A

Fatty acid

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12
Q

What is the enzyme of isomeerization of citrate?

A

Aconitase… Works both directions.

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13
Q

What is the Rate Limiting step of TCA cycle?

A

Step 3… Oxidative phosphorylation of isocitrate. Yields the first NADH. Releases 1 CO2 and 1 C atom lost.

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14
Q

alpha ketoglutarate is also produced from what amino acid?

A

From the metabolism of glutamate.

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15
Q

Which step yields the second NADH releases 1 CO2?

A

alpha ketoglutarate to succinyl CoA via alpha ketoglutarate dehydrogenase complex.

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16
Q

What can cause serious central nervous system problems?

A

Deficiency of niacin or thiamine

17
Q

Alpha ketoglutarate and PDH both require multiple _______ derived from vitamins.

A

coenzymes

18
Q

alpha-ketoglutarate dehydrogenase complex and PDH both require ______acid.

A

Lipoic Acid

19
Q

Arsenic poisoning forms a stable_____ with the -SH group in lipoic acid making it unavialable to serve as coenzyme.

A

thiol

20
Q

What affects the brain and can cause neurological disturbances and even death?

A

Arsenic poisoning

21
Q

What step in CTA cycle is coupled with phosphorylation of GDP to GTP?

A

Cleavage of Succinyl CoA to Succinate via Succinate thiokinase… (Substrate level phosphorylation)

22
Q

What step requires FAD?

A

Oxidation of succinate to fumarate… FADH2 is made… Embedded in inner mitochondrial membrane…

23
Q

What step is a hydration?

A

Fumarate to L-Malate via fumarase.

24
Q

What steps produce NADH?

A

step on both sides of alpha ketoglutarate (think about them) and malate to oxaloacetate…

25
Q

How many times will TCA cycle run?

A

Will run twice because there are two pyruvates…??? not sure… check this…

26
Q

How many ATP are synthesiezed for every NADH?

How many for FADH2?

A

~3 ATP for NADH.

~2 for FADH2

27
Q

Total ATP breakdown from ETC:
Glycolysis:
TCA:
PDH:

A

Glycoysis: 2 NADH= 6 ATP
TCA: 3 NADH=9ATP 1FADH2=2 ATP == 11ATP(x2)
PDH: 1NADH= 3 ATP (x2)
38 TOTAL ATP per glucose molecule