Chemical Basis of Life Flashcards
Smallest structural unit based on the levels of organization
Subatomic Particles
The three types of subatomic particles
1) Electrons; 2) Protons; and 3) Neutrons
Second smallest structural unit based on the levels of organization
Atoms
Third smallest structural unit based on the levels of organization
Molecules
What are formed by the complex combination/s of atoms?
Molecules
What are formed when molecules join together into even more elaborate units?
Complexes of Compounds
These are complexes of compounds that occur as microscopic or submicroscopic bodies in the living system.
Organelles
Organelles perform ____________.
Specific Functions
Why don’t organelles qualify as living units?
They do not satisfy all attributes/characteristics of life.
What are organelles composed of?
Organic and Inorganic Compounds
It is a specific combination of organelles; microscopic
Cell
Cells are organized complexly enough to contain all the necessary apparatus for the performance of ________ and ________.
Metabolism and Self-perpetuation
Represents the least elaborate structure that can be alive
Cell
“All life forms obey and are completely explained by the laws of ________ and ________.
Chemistry and Physics
This is anything that has mass and occupies space, and this may be living or non-living.
Matter
States that all matter is made up of atoms and atoms are composed of subatomic particles
Atomic Theory
Units of Matter
Atoms
In 1913, he proposed the structure of an atom and likened it to our solar system.
Neils Bohr
Three parts of an atom
1) Nucleus; 2) Electrons; and 3) Protons
A pure substance made up of one kind of atom that cannot be decomposed into simpler substances
Element
Six elements that play important roles in the phenomenon of life
1) Carbon; 2) Hydrogen; 3) Oxygen; 4) Nitrogen; 5) Sulfur; and 6) Phosphorus
The different shells in which the electrons of an atom are arranged reflect different ________.
Levels of Energy
How many electrons does the innermost shell of a filled or complete atom contain?
Two
How many electrons does the outermost shell of a filled or complete atom contain?
Eight
The chemical behavior of an atom depends largely on ________?
The number of electrons in its outermost shell
These are processes where atoms combine with other atoms or break apart from other atoms.
Chemical Reactions
These refer to two or more atoms combined in a reaction; atoms may be of the same kind or different
Molecules
A molecule containing at least two different kinds of atoms
Compound
These hold the atoms in a compound together.
Bonds
This is an attraction between an atom that has lost or gained electrons.
Ionic Bond
Atoms losing electrons
Cations
Atoms gaining electrons
Anions
This is a bond wherein two or more atoms share electrons.
Covalent Bond
Type of covalent bond with equal sharing
Non-polar
Type of covalent bond with unequal sharing
Polar
These are weak bonds formed between molecules due to the attraction between the partially positive end of a molecule and the partially negative end of another molecule.
Hydrogen Bonds
What is the relevance of hydrogen bonds to life?
They stabilize DNA and are essential to the capacity of DNA to reproduce itself and to form RNA.
These are molecules containing an atom with a single, unpaired electron in its outer shell.
Free Radicals
The reaction of free radicals with other molecules can produce a _______ and set off a _________.
Free Radical and Chain Reaction
These donate electrons to free radicals so that they may become stable.
Antioxidants
Synthesis reaction within the body
Anabolism
Decomposition reaction within the body
Catabolism
Reaction in which two or more atoms/ions/molecules combine to form new larger molecules
Synthesis Reaction
Reaction in which bonds are broken
Decomposition Reaction
Reaction that is partly synthesis and partly decomposition
Exchange Reaction
Reaction in which the end product can revert to the original combining molecules
Reverse Reaction
These are usually small, ionically bonded molecules that are vital for body functions; they do not contain the element carbon.
Inorganic Compounds
One of the most important and abundant substances in the body and the most abundant substance in the biosphere
Water
What is the polarity of water?
Polar
What is the molecular geometry of water?
Tetrahedral
Water “hating”
Hydrophobic
Water “loving”
Hydrophilic
Both water “hating” and “loving”
Amphiphatic
What are the four properties of water?
1) Cohesive Behavior; 2) Versatility as Solvent; 3) Stabilizes Temperature; and 4) Expansion Upon Freezing
What are the four functions of water?
1) Excellent solvent and suspension medium; 2) participant in many chemical reactions; 3) high specific heat; and 4) lubricant in various body regions
These are substances that dissociate hydrogen ions in solution; proton “donors”
Acids
These give off hydroxyl ion (-OH) in solution; proton “acceptors”
Bases
This is an indication of the degree of acidity or alkalinity of a solution based on the number of H+ in a solution.
pH
These are mechanisms that maintain homeostatic pH values in the body.
Buffer Systems
What is an essential function of buffer systems?
They react with strong acids and/or bases in the body yo replace them with weak acids and/or bases that can change normal pH values slightly.
These yield neither H+ nor OH- and do not affect the acidity or alkalinity of a solution, and are formed by reacting acids and bases.
Salts
These are elements occurring in nature but needed in smaller amounts by the body.
Trace Elements
The major element found in all organic molecules
Carbon
A major element found in all organic molecules and part of water
Hydrogen and Oxygen
A major element in all proteins and nucleic acids
Nitrogen
Important element in some proteins
Sulfur
Found in ATP molecule
Phosphorus
Found in chlorophyll molecule as well as in some enzymes
Magnesium
Essential for the creation of hormone thyroxin
Iodine
Hemoglobin structure of RBC
Iron
Found in bone structures and needed in muscle contractions
Calcium
For movement of nerve impulses in animals
Sodium
For creation of digestive chemicals and also in photosynthesis
Chlorine
For movement of nerve impulses in animals
Potassium
Compounds responsible for the living properties of cells
Organic Compounds
What are the two principal bonds in organic compounds?
C-H and C-C
What are the two unique features of a carbon element?
They are versatile and they can be joined into rings.
How many covalent bonds can carbon form?
Four
What structures can carbon form?
Rings, Linear Chains, Branches, and 2D and 3D Structures
These are molecules with the same molecular formula but different arrangements.
Isomers
What are the three types of isomers?
1) Structural Isomers; 2) Geometric Isomers; and 3) Enantionmers
These are isomers that differ in covalent partners.
Structural Isomers
These are isomers that differ in arrangement about a double bond (cis-trans).
Geometric Isomers
These are isomers that differ in spatial arrangements around an asymmetric carbon.
Enantiomers
Result of the arrangement of atoms in enantiomers
Molecules that are Mirror Images
What are the four properties of organic compounds?
1) Many functions; 2) Large in size and don’t dissolve easily; 3) Held by covalent bonds and decompose easily; and 4) Carbon bonds are shorter
What effect does having shorter C-C bonds have on a compound?
Increased stability at varying temperatures
What effect does being held by covalent bonds and decomposing easily have on a compound?
They are good sources of energy.
This type of biomolecule has a formula of Cx(H2O)y.
Carbohydrates
Why are carbohydrates named as such?
They consist of C, H, and O.
Simple Sugars
Monosaccharides
Two monosaccharides combined in a reaction
Disaccharides
Glucose + Glucose = ?
Maltose (Malt Sugar)
Glucose + Fructose = ?
Sucrose (Cane Sugar)
Glucose + Galactose = ?
Lactose (Milk Sugar)
Two mechanisms by which disaccharides are formed
Condensation Reaction and Hydrolysis
This is the mechanism by which disaccharides are formed by the removal of water.
Condensation Reaction
This is the mechanism by which disaccharides are formed by the addition of water.
Hydrolysis
More than two monosaccharides joined together
Polysaccharides
This is the principal storage product in plants.
Starch
This is made up of 2000 glucose units and is a major component of the plant cell wall.
Cellulose
This is animal starch.
Glycogen
This is a tough, structural polysaccharide that forms the external skeleton of many insects and cell walls of fungi.
Chitin
This is a structural polysaccharide and is a major carbohydrate in connective tissue matrix.
Glycosaminoglycans
What are the four significances of fibers?
1) Gives a person a feeling of fullness; 2) Dietary fiber; 3) Decreases risk for CVD and colon cancer; and 4) Lowers risk for various diseases
What are the functions of carbohydrates?
1) Structural building blocks of protoplasmic substances (e.g. DNA, RNA); 2) Energy for respiratory processes; and 3) Major component of the matrix of connective tissue
Functional group found in carbohydrates and many other cellular compounds
Hydroxyl (R-OH)
Functional group found in aldo- type sugars
Aldehyde (R-CHO)
Functional group found in keto- type sugars
Ketone (RC(=O)R’)
Functional group found in organic acids such as amino acids and fatty acids
Carboxyl (R-COOH)
Functional group found in amino acids, proteins, and other N-containing compounds
Amine
Functional group found in nucleic acids, ADP, ATP, and phospholipids
Phosphate
Functional group found in amino acid cysteine and in most proteins
Sulfhydryl
These are large organic compounds that don’t usually dissolve in water but in soluble organic solvents.
Lipids
Building blocks of lipids
Fatty Acids
What is the structure of lipids?
C, H, and O arranged in chains
This confers acidity on a fatty acid.
Carboxyl Group (-COOH)
This is the process by which fats are formed.
Esterification
These deform the linear chain and give fatty acids a kinked 3D structure.
Double Bonds
How much energy does one gram of fat contain as opposed to one gram of glycogen?
Twice as much
What is the differentiating factor between saturated and unsaturated fats/
Saturated fats does not contain double bonds while unsaturated fats do.
Fatty Acids + Glycerol + Additional Group = ?
Complex Lipids
This is a major constituent of membranes and is abundant in brain cells and nerves.
Phospholipids
This is a major constituent of myelin sheath.
Sphingolipids
What are the characteristics of saturated fats?
1) Animal in origin; 2) Solid at room temperature; and 3) Raises cholesterol level
What are the characteristics of unsaturated fats?
They are liquid at room temperature and they lower cholesterol levels.
What is virgin coconut oil rich in?
Lauric Acid (Monolaurin)
These are derived fatty acids made in most cells and are regulatory in function.
Eicosanoids
These are lipids that consist of ring-like arrangement of atoms (four rings).
Steroids
What is the composition of fats?
Glycerol + 3 Fatty Acids
What is the composition of phospholipids?
Glycerol + 2 Fatty Acids + Phosphate
What is the composition of waxes?
Alcohol + 1 Fatty Acid
What is the composition of steroids?
Lipids Fused in Rings
What are the functions of fats?
Energy, Storage, and Insulation
What is the function of phospholipids?
Diffusion
What are the functions of waxes?
Water Repellant and Cell Wall Protection
What are the functions of steroids?
Message and Membrane Fluidity
These are polymers of amino acids (polypeptides).
Proteins
What are proteins composed of?
Carboxyl Group (-COOH), Amino Group (-NH2), and a Side Chain (R-)
What are the essential amino acids?
Phenylalanine, Valine, Threonine, Methionine, Alanine, Tryptophan, Histidine, Isoleucine, Leucine, Lysine
Synthesis of Proteins
Amino Acids to Peptide Bonds to Polypeptide
What is the reason behind the enormous diversity of protein molecules?
The diversity of its amino acid sequence within protein molecules
This refers to the structure in which a linear sequence of approximately 40 to 1000 amino acids are joined by peptide bonds.
Primary Structure
This structure results from the coiling and folding of the primary structure into alpha-helices or beta-pleated sheets.
Secondary Structure
What is the reason behind the folding of primary structures to form secondary structures?
Hydrogen bonds; movement of hydrophobic R-groups toward the non-aqueous center of the molecule and of the hydrophilic R-groups toward the aqueous surface of the molecule
This is the sequence of amino acids in the polypeptide strand.
Primary Structure
This forms when polypeptide further fold; these folds are stabilized by R-group-R-group interactions
Tertiary Structure
This is formed when two or more polypeptides with tertiary structure cluster together.
Quaternary Structure
What appearance do polypeptides with tertiary structure possess?
Globular
This is a molecular technique used to determine the structure of protein constituents.
Immunoprecipitation
This is a molecular technique that can differentiate complex proteins.
Gel Electrophoresis