Chapters 26-29, 31 Flashcards
what is taxonomy
the process of grouping organisms together based on shared similarities that suggest they are related evolutionarily
who is the father of Taxonomy
Carolus Linnaeus
what is a taxon (plural taxa)
a group of shared similarities used in taxonomy
what does a prokarya have instead of a true nucleus
a nucleoid region
what is binomial nomenclature
the process of giving every organism a unique 2-part scientific name
what is the plural of genus and how is it pronounced
genera, pronounced similar to general
what is a specific epithet
a unique name following the genus identifying the species of an organism
what is a binomial (naming)
the 2-part scientific name of an organism
why is the binomial always capitalized or underlined
to indicate that it is Latin
who published Systema Naturae and in what year
Carolus Linnaeus 1735
how many pages was the first edition of Systema Naturae
11 pages
How many plants and animals were named and classified in the 10th edition of Systema Naturae (1758)
over 12,000
In scholarly texts how is the scientist that first described an organism in (Botany) indicated
Abbreviated surname
In scholarly texts how is the scientist that first described an organism in (Zoology) indicated
full surname
How is it indicated if the genus of a species has been changed since the organism’s original description
Abbreviated (botany) or full (zoology) surname of describer and description date placed in parentheses
What is the Domain of Humans
Eukarya
What is the Kingdom of Humans
Animalia
What is the Phylum of Humans
Chordata
What is the Subphylum of Humans
Vertebrata
What is the Class of Humans
Mammalia
What is the Order of Humans
Primate
What is the Family of Humans
Hominidae
What is the Genus of Humans
Homo
What is the species of Humans
Homo (sapiens)
what organisms are considered eukarya
organisms made of eukaryotic cells
what organisms are considered animalia
multicellular heterotrophic eukaryotes (sponges to humans)
what organisms are considered Chordata
animals with a nerve chord (tunicates to humans)
what organisms are considered Mammalia
vertebrates with hair and mammary glands (mice to humans)
what organisms are considered Primate
mammals with short snouts, eyes forward, opposable thumbs (lemurs to humans)
what organisms are considered Hominidae
primates with prominent face, flattened nails, no tail (Humans, chimps, bonobos, gorillas, orangutans)
What organisms are considered Homo
Human
What does Homo sapiens mean?
wise human
what is phylogeny?
the evolutionary history of an organism
what are (5) ways we compare the evolutionary relatedness of organisms?
- comparative anatomy
- embryology
- physiology
- biochemistry
- genetics
what are homologous structures?
structures that are similar because they arose from a common ancestor
what are analogous structures?
structures that arose independently but appear similar because of convergent evolution
what is convergent evolution?
evolving from separate ancestors that required similar functions
what is a phylogenetic tree?
a “best guess” at the evolutionary history of a group of organisms
in a phylogenetic tree, what is an outgroup?
the organism that diverged from the common ancestor first and is thus least similar to the other organisms
what was the original two kingdom system?
animalia and plantae (photosynthetic organisms like cyanobacteria and sedentary organisms like fungi were sorted into plantae)
what years was the five-kingdom system considered the most accurate?
1969-1990
what are the five kingdoms of the five kingdom system?
monera (prokaryotes), protista (unicellular eukaryotes), fungi (multicellular saprotrophs), plantae and animalia
what causes the three domain system to be added to the tree of life?
Carol Woese provided molecular evidence that the prokaryotes are extremely diverse
what are the three domains?
- bacteria
- archaea
- eukarya
what two principles allow us to create the best guess for a phylogenetic true?
- principle of maximum parsimony - fewest evolutionary events
- principle of maximum likelihood - most likely explanation
how long have prokaryotes been on Earth? and how long were they alone?
3.5 billion years; 1.5 billion years
how much bigger are eukaryotes than prokaryotes?
about ten times bigger
what are two characteristics that eukarya and archaea have in common?
- no peptidoglycan in cell wall
2. histones in DNA
what is similar about the DNA of bacteria and archaea?
circular chromosomes
what are methanogens?
obligate anaerobes (archaea) that produce methane
what are extreme halophiles?
archaea that live in very salty (20%+) environments
what are extreme thermophiles?
archaea that live in hot springs and thermal vents in the ocean
what were likely the earliest prokaryotes?
extreme thermophiles
what are three common categories of prokaryotes based on cell shape?
- cocci (spheres): chains clusters and pairs
- bacilli (rods): may form chains, pairs
- spirilla/spirochetes (helices): single
what does the prefix diplo- indicate in prokaryotes
paired
what does staphylo- indicate in prokaryotes
clustered
what does strepto- indicate in prokaryotes?
chains
what is plasma membrane and cell wall of prokaryotes made out of?
peptidoglycan (sugar and polypeptides)
what compound absorbs the violet color in a gram stain?
peptidoglycan
which prokaryotes have simpler walls, gram positive or gram negative?
positive
what is different about gram negative prokaryotes?
less peptidoglycan and a second lipopolysaccharide membrane
what color are gram negative prokaryotes
pink
why do some prokaryotes stick to the host with a sticky capsule?
to reduce surface area and make it harder to kill the cell
what is a pili?
a long hairlike structure that adheres bacterium to host
what is a fimbriae?
short hairlike structures that adheres bacterium to host
what is a sex pilus?
a hair like protrusion used to exchange DNA between bacteria during conjugation
what is a bacterial chromosome?
a single large double-stranded DNA circle
where is the bacterial chromosome located?
in the nucleoid region where cytoplasm is less dense
what are plasmids
additional tiny pieces of circular DNA in bacteria
which replicates faster, plasmids or bacterial chromosome?
plasmids
what is the name of the prokaryotic process of asexual reproduction?
binary fission
what are three ways a bacterium can vary its DNA?
- transformation
- conjugation
- transduction
what is bacterial transformation?
when a bacteria takes in naked DNA from environment (can cross species)
what is bacterial conjugation?
transfer of DNA between two bacteria joined by a sex pillus. one way transfer, “male” to “female”
what is bacterial transduction
bacteriophages (viruses) carry bacterial DNA from host to host
what is a bacterial endospore
the bacteria replicates and encases it in a tough wall. can survive environmental extremes
what are photoautotrophs
use light energy to make organic molecules from CO2
what organism plays a major role in nitrogen fixation
cyanobacteria
what is nitrogen fixation
conversion from atmospheric N2 to ammonium (NH4+)
what are chemoautotrophs
energy from inorganic substances to make organic molecules from CO2
what are photoheterotrophs
use light energy and organic “food” to make ATP
what are chemoheterotrophs
consume food as the source for both energy and carbon
what are saprobes
chemotrophs that decompose dead material
what are parasites
chemoheterotrophs that absorb energy (carbon) from a host
what are obligate aerobes
need oxygen to grow
what are obligate anaerobes
poisoned by oxygen
what are facultative anaerobes
use oxygen if available, ferment if oxygen is unavailable
what was the food source for the earlier prokaryotes
organic molecules; photosynthesis evolved early in response to food shortage
what are opportunistic pathogens
normally found in body in low numbers, if immune system is weakened they multiply
what are exotoxins
poisonous proteins secreted by prokaryotes
what are endotoxins
poisonous proteins associated with outer membrane of some gram-negative bacteria