Chapter 4: Enzymes Flashcards
- effective catalysts for an enormous diversity of chemical reactions
- bring substrates together in an optimal orientation
- catalyze reactions by stabilizing transition states
enzymes
how do enzymes determine which one of several potential chemical reactios actually takes place
selectively stabilizing a transition state
- additional chemical component
- one or more inorganic ions
cofactor
complex organic or metalloorganic molecule
coenzyme
examples of inorganic ions
- Fe2+
- Mg2+
- Mn2+
- Zn2+
Coenzyme that transfers CO2
biocytin
Coenzyme that transfers acyl groups
coenzyme A
Coenzyme that transfers H atoms and alkyl groups
5’-Deoxyadenosylcobalamin (coenzyme B12)
Coenzyme that transfers electrons
Flavin adenine dinucleotide
Coenzyme that transfers electrons and acyl groups
Lipoate
Coenzyme that transfers hydride ion (:H-)
nicotinamide adenine dinucleotide
Coenzyme that transfers amino groups
pyridoxal phosphate
Coenzyme that transfers one-carbon groups
tetrahydrofolate
Coenzyme that transfers aldehydes
thiamine pyrophosphate
provide additional chemically reactive functional groups besides those present in the amino acid chains of apoenzymes
cofactors
are sythesized within the human body using building blocks obtained from other nutrients
coenzymes
coenzyme or metal ion that is very tightly or even covalently bound to enzyme protein
prosthetic group
complete, catalytically active enzyme together with its bound coenzyme and/or metal ions
holoenzyme
protein part of enzyme
apoenzyme or apoprotein
permanent attachment is __ an absolute requirement for coenzyme to be an active part of enzyme
NOT
provides an example of coenzyme behavior where it is released after reaction has occured
NAD+
how are some enzyme protein modified covalently
by
- phosphorylation
- glycosylation
- other processes
Which of the following statements about conjugated enzyme is correct?
a. it contains only amino acids
b. it always contains a metal atom
c. it always contains a nonprotein part
d. no correct response
c. it always contains a nonprotein part
Which of the following statements about cofactors is incorrect?
a. all conjugated enzymes contain cofactors
b. metal ions can function as cofactors
c. coenzyme is an alternate name for all cofactors
d. no correct response
c. coenzyme is an alternate name for all cofactors
Which of the following statements about the interaction of cofactors with apoenzymes is correct?
a. they are always covalently bonded to the apoenzyme
b. they cannot be covalently bonded to the apoenzyme
c. they can, but do not have to be, covalently bonded to the apoenzyme
d. no correct response
c. they can, but do not have to be, covalently bonded to the apoenzyme
sugar that can be stored indefinitely on the shelf with no deterioration
glucose
what does glucose represent
thermodynamic potentiality
suffix that identifies substance as an enzyme
-ase
-in
examples of enzymes with -ase
- urease
- sucrase
- lipase
examples of enzymes with -in
- trypsin
- chymotrypsin
- pepsin
catalyzes an oxidation reaction
oxidase enzyme
catalyzes a hydrolysis reaction
hydrolase enzyme
catalyzes the oxidation of glucose
glucose oxidase
catalyzes the carboxylation of pyruvate
pyruvate carboxylase
refers to the chemical reaction in which carboxylic acid groups are produced by treating the substrate with carbon dioxide
Carboxylation
catalyzes the dehydrogenation of succinate
succinate dehydrogenase
catalyzes the hydrolysis of urea
urease
catalyzes the hydrolysis of lactose
lactase
Predict function of enzyme:
cellulase
catalyzes hydrolysis of cellulose
Predict function of enzyme:
sucrase
catalyzes hydrolysis of disaccharide sucrose
Predict function of enzyme:
L-Amino acid oxidase
catalyzes the oxidation of L-amino acids
Predict function of enzyme:
aspartate aminotransferase
catalyzes transfer of amino group from aspartate to different molecule
Six major classes of enzymes on the basis of types of reactions they catalyze
- oxidoreductase
- transferase
- hydrolase
- lyase
- isomerase
- ligase
catalyzes an oxidation-reduction reaction
oxidoreductase
oxidation reaction
increase C-O
decrease C-H
reduction reaction
decreases C-O
increases C-H
what do fruits contain that makes it oxidize
phenol derivatives
Ways which can prevent or slow down phenolase and enzymatic browning
- immersion in cold water
- refrigiration
- boiling
- addition of lemon juice
catalyzes transfer of functional group from one molecule to another
transferase
two major subtypes of transferase
- transaminase
- kinases
transfer of amino group from one molecule to another
transaminase
transfer of phosphate group from adenosine triphosphate (ATP) to give adenosine diphosphate (ADP)
kinases
calatyzes reaction between glutamine residue in protein and lysine residue
transglutaminases
can be used to make consistent, uniform portions of meat or fish from smaller scraps
meat glue
catalyzes hydrolysis reaction in which addition of water molecule causes bond to break
hydrolase
what doe pineapply, kiwi, or papaya have that prevents hydrogel from forming
protease (ligase)
Protease of fress pineapple
bromelain
Protease of fresh kiwi
actinidin
Protease of fresh papaya
papain
what do the protease of the fresh fruits hydrolyze
hydrolysis of peptide (amide) linkages in gelatin
catalyzes the addition of a group to a double bond or the removal of a group to form a double bond in a manner that does not require hydrolysis or oxidation
Lyase
example of groups that are removed by Lyase when forming double bonds
- H2O
- CO2
- NH3
catalyzes the isomerization of a substrate in a reactio, converting it into a molecule isomeric with itself
isomerase
catalyzes the bonding together of two molecules into one wth the participation of ATP
ligase
subclasses of oxidoreductase
- oxidases
- reductases
- dehydrogenases
oxidation of substrate
oxidase
reduction of substrate
reductase
introduction of double bond (oxidation) by formal removal of two H atoms from a substrate, with one H being accepted by a coenzyme
dehydrogenases
subclasses of transferases
- transaminase
- kinase
transfer of an amino group between substrates
transaminase
transfer of phosphate group between substrates
kinase
subclasses of hydrolases
- lipase
- protease
- nuclease
- carbohydrase
- phosphatase
hydrolysis of ester linkages in lipids
lipase
hydrolysis of amide linkages in proteins
protease
hydrolysis of sugar-phosphate ester bonds in nucleic acids
nuclease
hydrolysis of glycosidic bonds in carbohydrates
carbohydrase
hydrolysis of phosphate-ester bonds
phosphatase
subclasses of lyase
- dehydratase
- decarboxylase
- deaminase
- hydratase
removal of H20 from substrate
dehydratase
removal of CO2 from substrate
decarboxylase
removal of NH3 from substrate
deaminase
addition of H2O to a substrate
hydratase
subclasses of isomerase
- racemase
- mutase