Chapter 3: Microscopy And Staining Flashcards
Nanometers (nm)
10^-9
- measure viruses
Micrometers (um)
10^-6
- measure bacteria
Light properties
Wavelength
Resolution
Light travel
Wavelength (lambda)
Length of a light ray
- measure distance between two adjacent peaks or troughs
- average visible light wavelength is .55um
Resolution
Ability to separate two objects as distinct
- the shorter the wavelength of light, the better resolution
Reflection
Light bounces off the object
Transmission
Passes through the object
Absorption
Light is absorbed by the object
- luminescence can occur (wavelength is changed and re-emitted by the object)
Florescence (glow)
Re-emitted light is only visible when the object is being irradiated (given light)
Phosphorescent (glow in the dark)
Light continues to be re-emitted after irradiation stops
Refraction
Light bends as it passes through the media
- oil prevents refraction in microscope
Diffraction
Light bending around a split
Bright field microscopy
Cells are slightly darker on a light background
- difficult to see without staining
Dark field microscopy
Cells appear light on a dark background
Phase contrast microscopy*
A special condenser and objective lenses are used to distinguish small differences in index of refractions
- can view living organisms
Nomarski (differential indifference)*
- same ideas as phase contrast, but focus is on a single level or shorter depth of field
- looks 3D
- can view living organisms
Ultraviolet light
Short wavelength to make the object fluoresce
Confocal microscopy (UV)
Shows higher resolution than fluorescent
Digital microscope
Automatic
Electron microscope
Uses electron beams (not light) and electromagnets to help focus on the image
- have shorter wavelengths than visible light rays*
Transmission electron microscopy (TEM)
- Provides highest level of magnification
- Prepare super thin slices of the specimen
- can magnify up to 500,000x
Scanning electron microscopy (SEM)
- Coat specimen with metal that reacts with electron beam to produce image
- looks 3D
Wet mount
- Cover a drop of specimen with coverslip on slide
- Allows you to see a living organism’s size, shape, motility
Hanging drop
- Hang a drop of specimen from coverslip into a well on depression slide
- provides better view of motility
Smear
- place cells on a glass slide
- let them air dry
- heat fix them to adhere them to slide
- kills cells
Acidic stains
- Negatively charged
- Stain positively charged glass, not cells
- Cells appear white on a dark background
- Also called negative stains
Basic stains
- Positively charged
- Stain negatively charged cells
- Cells appear dark on a light background
- Also called a direct stain
Simple stain
- Uses a single dye
- Shows size, shape, arrangement
Differential stain
- Use more than one dye to differentiate cell types
Gram stain
- Used to distinguish cells based on cell wall
1. Color everything purple with crystal violet dye (primary stain)
2. Add iodine as a mordant to set the stain
3. Add ethyl alcohol decolorizer
4. Add safranin counterstain to visualize gram negative cells
Acid fast bacteria
- mycobacterium
- cell wall contains a waxy lipid (mycolic acid) which is hard to stain
- look gram positive in a gram stain
- diseases like TB, leprosy (take a long time to grow and divide
Acid fast stain
- Primary stain: Carbolfuschin (pink)
- use heat to fix stain into cell wall - Decolorizer: acid alcohol
- wash pink color out of all cells that aren’t acid fast - Counterstain: methylene blue
Result: acid fast are pink, non acid fast are blue
Negative stain
- determined if cells have capsule (not stained by acidic or basic dye)
- creates a white ring around stained cell
- cells with capsule tend to be more virulent
Flagellar stain
Coat flagella with a layer of dye or metal
Endospore
- clostridium and bacillus species
- Cell puts a copy of DNA into an endospore when it encounters harsh conditions (heat, lack of food)
Schaeffer-Fulton stain
- Primary stain: malachite green
- heat fix - Decolorizer: water
- washes out everything that isn’t a spire - Counterstain: safranin (pink)
Result: endospores are green, vegetative cells are pink