Chapter 15 Flashcards
Central dogma of molecular biology
Information passes in one direction from gene (DNA) to an RNA copy of gene, and RNA copy directs assembly of a chain of amino acids into a protein
In the central dogma of molecule biology, ____ is transcribed to make ______, which is translated to make a ______.
DNA; mRNA; protein
Transcription
DNA-to-RNA step
Translation
RNA-to-protein step
The process of transcription produces an _____ copy of the information in DNA.
RNA
Template strand
DNA strand that is copied
Coding strand
Messenger RNA (mRNA)
carries DNA transcript to ribosome
Ribosomal RNA (rRNA)
RNA found in ribosomes
Transfer RNA (tRNA)
adapter molecule between mRNA and amino acids
What is the functions of tRNAs?
Interpret information in mRNA
Help position amino acids on ribosome
Codon
Sequence of three nucleotides
Reading frame
Correct succession of nucleotides in triplet codons that specify amino acids on translation
List the three stop codons.
UAA, UGA, UAG
What is the start codon and amino acid does it encode?
“AUG”; methionine (Met)
Degenerate
some amino acids are specified by more than one codon
What are the two forms of RNA polymerase in prokaryotes?
- Core polymerase
- Holoenzyme
What are the four subunits that make up core polymerase?
Two identical alpha subunits, beta subunit, beta’ subunit
The holoenzyme is formed by the addition of a ______ subunit to the core polymerase.
Sigma
T or F: In prokaryotes, transcription does not require a primer.
T
Promoter
forms a recognition and binding site for RNA polymerase
Start site
Where transcription actually begins
Terminator site
Signals the end of transcription
transcription unit
region from promoter to terminator
Transcription bubble
region containing RNA polymerase, DNA template, and growing RNA transcript
While in the replication bubble, the growing RNA transcript is a __________
RNA:DNA hybrid
Hairpin
In prokaryotes, transcription and translation are ________
coupled
RNA polymerase I
transcribes rRNA
RNA polymerase II
transcribes mRNA
RNA polymerase III
transcribes tRNA
5’ cap
Formed by the addition of GTP to 5’ end of mRNA
Carboxy terminal domaint (CTD) is part of the largest subunit of which RNA polymerase?
RNA polymerase II
3’ poly-A tail
series of adenine residues added to 3’ end of an mRNA
Introns
Intervening sequences
Exons
Coding sequences
pre-mRNA splicing
primary transcript is cut and put back together to produce mature mRNA
Alternative splicing
a single primary transcript can be spliced into different mRNAs by using different sets of exons
aminoacyl-tRNA synthetases
attach each amino acid to
What are the two functional ends of tRNA?
- acceptor stem
- anticodon loop
Acceptor stem
3’ end of tRNA; portion that amino acids attach to
Anticodon loop
Charging reaction
Reaction by which an aminoacyl-tRNA synthetase attaches a specific amino acid to the correct tRNA
Charged tRNA
tRNA joined to an amino acid
The ribosome contains three binding sites:
- A (aminoacyl) site
- P (peptidyl) site
- E (exit) site
A (aminoacyl) site
Binds to tRNA carrying next amino acid to be added
P (peptidyl) site
binds to tRNA attached to growing peptide chain
E (exit) site
binds to tRNA that carried previous amino acid added
tRNAs move through the A, P, and E site during __________
elongation
Peptidyl transferase
Ribosome-binding sequence (RBS)
a conserved sequence at the 5′ end of mRNA that is complementary to the 3′ end of a small subunit rRNA
Elongation factor (EF-Tu)
Binds to charged tRNA and GTP
Describe the details of the elongation cycle.
- Charged tRNA comes to ribosome bound to EF-Tu and GTP
- Peptidyl transferase catalyzes formation of peptide bond
- Ribosome translocation - tRNA in A site is moved into P site
Wobble pairing
Release factors
Proteins that release newly made polypeptide from ribosome
In termination, stop codons do not bind to tRNA; instead they are recognized by __________.
Release factors
In eukaryotes, translation can occur either in _______ or on the ___________
cytoplasm; RER
Signal recognition particle (SRP)
Cytoplasmic complex of protein that recognizes and binds to signal sequence
Point mutation
mutation that alters a single base
Missense mutation
Mutation that does not result in an amino acid change
Nonsense mutation
Mutation results in addition of a stop codon
Frameshift mutation
Indel
gain or loss of 1-50 bp
Cri-du-chat syndrome
Deletion in chromosome 5
Deletion
loss of DNA
Duplication
Gain of DNA
Inversion
material in a chromosome is inverted
Reciprocal translocation
A piece of a chromosomes breaks off and joins another chromosome
Some types of cancer are related to chromosomal _________
translocations
Spliceosome
Organelle that splices pre-mRNA
Responsible for excision of introns and joining of exons