Ch 5: Microbial Metabolism Flashcards

1
Q

According to Collision theory, what 3 factors determine whether a chemical reaction will occur from a collision?

A
  1. Molecules need to collide with enough energy
  2. Speed of the molecules
  3. Orientation of the molecules
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2
Q

How much can enzymes increase reaction rates?

A

108 - 1010 times

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3
Q

What is the “turnover number” of an enzyme?

A

The max number of substrate molecules an enzyme converts to product per second

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4
Q

What is the turnover number of DNA polymerase I?

A

15

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5
Q

What is the turnover number of lactate dehydrogenase?

A

1000

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6
Q

What is the turnover number for carbonic anhydrase?

(CO2 + H2O → HCO3 + H+)

A

500,000

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7
Q

Is nicotinamide adenine dinucleotide (NAD+) used in catabolic or anabolic reactions?

A

Catabolic

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8
Q

Is nicotinamide adenine dinucleotide phosphate (NADP+) used in catabolic or anabolic reactions?

A

Anabolic

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9
Q

What are some examples of inorganic cofactors?

A

Iron

Copper

Zinc

Calcium

Cobalt

Manganese

Magnesium

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10
Q

What conditions will denature proteins? (6)

A

High temperatures

Change in pH

Detergents

Heavy metal ions

Alcohol

Salts

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11
Q

Proteins can potentially re-nature if ______

A

they have not coagulated

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12
Q

What is the function of sulfanilamide?

A

Competitive inhibitor of dihydropteroate synthase and prevents the synthesis of folic acid in bacteria

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13
Q

What other molecule does sulfanilamide mimic?

A

p-Aminobenzoic acid (PABA)

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14
Q

What is the function of ribozymes?

A

RNA splicing, general Ribosomal RNA

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15
Q

Compare and contrast the Entner-Doudoroff pathway and glycolysis.

A

EDP: produces 1 ATP, 1 NADH, and 1 NADPH; has a lower activation energy

Glycolysis: produces 2 ATP and 2 NADH; has a higher activation energy

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16
Q

What is the final product from one round of the pentose phosphate pathway?

A

2 NADPH

No ATP consumed or produced

A source for 4/5 carbon skeletons that can be used for synthesis of AA Nucleic acids and other macromolecules

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17
Q

What is the final output for every 2 molecules of acetyl-CoA that enter the TCA cycle?

A

4 CO2, 6 NADH, 2 FADH2, 2 ATP (technically GTP but it’s equivalent)

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18
Q

What are the three classes of carriers in the electron transport chain?

A

Flavoproteins

Cytochromes

Ubiquinones (Q)

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19
Q

Name the complexes involved in the electron transport chain. What are the mobile electron carriers?

A

I: NADH dehydrogenase

II: Succinate dehydrogenase

III: Cytochrome bc-1 complex

IV: cytochrome C oxidase

V: ATP synthase

Mobile electron carriers: Q and cytochrome C

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20
Q

Where are the enzymes for the electron transport chain located in prokaryotes vs eukaryotes?

A

Prokaryotes: plasma membrane

Eukaryotes: inner mitochondrial membrane

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21
Q

Which complexes in the electron transport chain actively transport protons across the membrane?

A

NADH dehydrogenase (I)

Cytochrome bc-1 complex (III)

Cytochrome C oxidase (IV)

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22
Q

ATP synthase functions how?

A

Protons pumped out by complexes I, III, and IV can only get back across the membrane via ATP synthase, which drives the synthesis of ATP

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23
Q

How many total ATP are produced in prokaryotes from the complete oxidation of one molecule of glucose during aeorbic respiration?

A

38 ATP

C6H12O6 + 6 O2 +38 ADP + 38 Pi → 6 CO2 + 6 H2O + 38 ATP

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24
Q

In anaerobic respiration, what is used as an electron acceptor instead of O2? What are their products? (3)

A

NO3- → NO2-, N2 + H2O

SO4- → H2S + H2O

CO2 → CH4 + H20

25
Q

What is homolactic fermentation?

A

Lactic acid fermentation that only produces lactic acid

26
Q

What is heterolactic fermentation?

A

Lactic acid fermentation that produces lactic acid and other compounds

27
Q

What is the final electron acceptor of lactic acid fermentation?

A

Pyruvate

28
Q

What microorganism is commercially important for ethanol production?

A

Saccharomyces cerevisiae

(yeast)

29
Q

What is the evolutionary benefit of ethanol fermentation?

A

Ethanol is toxic to other microbes. Yeast can then break down the ethanol for energy

30
Q

Bacteria can help clean up oil spills by utilizing what metabolic pathway?

A

β - oxidation

31
Q

What is the drawback to a typical fermentation test?

A

It relies on a pH indicator (turns yellow in acid) to detect for acid side-products and not actually ethanol

32
Q

What is a chemotroph?

A

an organism that uses energy from organic or inorganic compounds (chemicals

33
Q

What is a phototroph?

A

An organism that uses light as its primary energy source

34
Q

What is an autotroph?

A

An organism that uses CO2 for their principal carbon source

35
Q

What is a heterotroph?

A

An organism that requires an organic carbon source (feeders)

36
Q

What is a saprophyte?

A

A class of chemoheterotroph that live on dead organic matter

37
Q

What is a parasite?

A

A class of chemoheterotroph that derives its nutrients from a living host

38
Q

Thiobacillus ferrooxidans is a chemoautotroph. How does it get its energy?

A

It uses the Calvin-Benson cycle to fix CO2 (self-feeder)

39
Q

What are the similarities and differences between photoheterotrophs and photoautotrophs?

A

Both use light as primary energy source

photoheterotrophs require an organic carbon source, but photo autotrophs can fix CO2 with the Calvin-Benson cycle

40
Q

During the complete oxidation of glucose to CO2 and H2O, how much energy is trapped in the bonds of ATP and how much is lost as heat?

A

55% ATP

45% lost as heat

41
Q

Besides the production of new cellular components, what other cellular processes use ATP?

A
  1. Creating gradients
  2. Active transport
  3. Movement (flagellar)
42
Q

Three different ways ATP can be made

A

Substrate level Phosphorylation

Oxidative Phosphorlaytion

Photophosphorylation( 2 different type)

43
Q

Glycolysis formula

A

Glucose+ 2 ATP+2ADP+2PO4+2 NAD+ →

2 pyruvic acid + 4 ATP + 2 NADH + 2H+

44
Q

Enter- Doudoroff pathway

A

Product,1 ATP, 1 NADPH and 1 NADH

Present in some gram-negative bacteria,

Generally not in gram-positive

45
Q

Erythrose 4 phosphate

A

to make several amino acids

46
Q

F6P(PPP)

A

Can isomerase to G6P and reenter ther PPP or glycolysis

47
Q

G3P

A

enter glycolsis

48
Q

Ribose phospate

A

To make Nucleotides and nucleic acids or Calvin- Benson cycle

49
Q

Fermentation Test

A

Acid production decreases the pH, pH sensor turns yellow

Mannitol is Fermenting

Protein alternate source to grow on

50
Q

Protein Catabolism

A

Protein catabolism results in increase of pH, turns purple

51
Q

Protein Catabolism(iron agar)

A

To test if Sulfar can be removed, results in black precipitate and H2S

Distinguishes Salmonella from E.coli

52
Q

Chemoheterotrophs

A

Hard to distinguish the role of carbon, come in two classes

Saprophyte:Live on dead organic matter

Parasites derive nutrients from a live host

53
Q

Chemoautotrophs

A

REDUCE inorganic compounds, Tahiobcillus ferrooxidans

Use the Calvin Benson cycle

54
Q

Photohetertrophs

A

Use light for energy

Need an organic carbon source

55
Q

Photoautorophs

A

Use light for energy

Use Calvin Benson cycle to fix CO2

Green and purple sulfer bacteria cynobactera, algae and green plants

Two

56
Q

Apoenzyme

A

An enzyme that requires a cofactor, but does not have one bound to it,
Inactive

57
Q

Haloenzyme

A

An apoenzyme with its cofactor, ACTIVE

58
Q

NAD/NADP+
FAD

A

Nicotinamide adenine dinucleotide(Phosphate)
Cofactors for Oxidase reduction
NAD -Catabolic
NADPH- Anabolic
Kerbs cycle

59
Q

What is the Calvin-Benson cycle

A

A light INdependent reaction to “fix” CO2
3 turns make one G3P

6 turns make one Glucose

6CO2+18ATP+12 NADH→1 Glucose