ch. 15.1-4, 16.1-3 SAC Flashcards
protein
organic polymers made from monomers called amino acids
essential amino acids
9 amino acids that cannot be synthesised by the body so must be obtained in the diet
complementary proteins
combination of proteins that is able to provide the complete set of all the essential amino acids for the diet
structure of amino acids
amino, carboxyl, hydrogen, r group
r group
differentiates amino acids
zwitterion
dipolar ion formed when the amino and carboxyl groups in an amino acid or polypeptide are both charged but the overall ion is neutral
dipeptide
organic molecule that has bee produced by the condensation reaction between two amino acids
formation of a dipeptide
2 amino acids = dipeptide and water
peptide / amide linkage
CONH
tripeptide
an organic molecule made from three amino acid units linked by peptide bonds
condensation reaction
reaction in which two molecules link together by eliminating water molecule
polypeptide
organic polymer molecule made from a condensation reaction between amino acids
a polypeptide made from how many amino acids is a protein
more than 50
N terminal
end of the chain with a free amino group (NH2)
C terminal
end of the term with a free carboxyl group (COOH)
primary structure
the sequence (number, order and type) of amino acids in a polypeptide chain
secondary structure
initial level of spatial arrangement of a polypeptide chain. a-helices and b-pleated sheets
how is secondary structure formed
hydrogen bonding between polar -NH group in one peptide link and the polar -C=O in another peptide link at regular intervals along the same chain
tertiary structure
overall three dimensional shape of a polypeptide chain formed by the folding and twisting of the protein
forms of tertiary structure
flat sheets.
long helixes.
compact globular shapes
bond types in tertiary structures
hydrogen bonds. dipole-dipole interactions. ionic interactions. covalent cross-links. dispersion forces
quaternary structure
highest level of organisation in protein structure.
composed of 2 or more polypeptides
forces that hold polypeptide chains together
mainly dispersion forces
nutrients
large biomolecules that are used to provide nourishment for growth or metabolism
metabolism
all the chemical processes occurring within a living cell or organism that are necessary for the maintenance.
breakdown of food.
synthesis of molecules.
digestion
the breakdown of large insoluble molecules into smaller, soluble molecules
process of digestion
mouth -> stomach -> small intestine -> large intestine
digestion of carbohydrates
mouth (amylase) -> small intestine (duodenum, jejunum) with digestive enzymes from pancreas
digestion of proteins
pepsin (stomach) -> shorter polypeptides move into duodenum ->dipeptides -> amino acids
digestion of triglycerides
lipase (duodenum) -> produces glycerin and fatty acids
hydrolysis
involve splitting large molecules by their reaction with water molecules
condensation
involve joining two smaller molecules to form larger molecule with the elimination of a water molecule
enzyme
protein molecule that functions by catalysing a specific biochemical reaction by lowering activation energy.
biological catalyst
biological catalyst
proteins called enzymes that increase the rate of reaction by 10^10
active site
site at which a reaction is catalysed. hollow or cavity in protein structure where enzyme bonds with substrate
substrate
reactant in a reaction that is catalysed by an enzyme at the active site
lock and key model
substrate fits perfectly into the active site.
highly specific
induced fit model
active site changes shape slightly to fit the substrate
are amino acids chiral
yes.
exist as optical isomers enantiomers
coenzyme
an organic molecule that is required by an enzyme in order to catalyse a reaction
cofactor
metal ion or small molecule that combines with an enzyme and is required for enzyme activity
enzyme activity
the amount of substrate that is converted to products per unit time
optimum pH
pH at which the enzyme activity is at its greatest
optimum temperature
temperature at which the enzyme activity is the greatest
temperature increases above optimum temp
increased kinetic, disrupt structure, increased movement breaks intermolecular forces responsible for tertiary and quaternary, change in 3D means active site changes, decreased reaction rate
temperature decreases below optimum temp
lower kinetic energies, less frequent and less energetic collisions
denatured
change in 3D shape so its unable to function as a catalyst
increased temp and pH
alter enzyme structure by breaking hydrogen bonds, substrate doesn’t fit active site, enzyme loses activity, denatured