Bonding Flashcards

0
Q

Bonding

A

Electronegativity is a measure of the degree to which an atom draws electrons towards itself.
Polar covalent bond is distorted in equal distribution

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1
Q

Bonding

A

Atoms share electrons in covalent bonds in order that attains a full outer electron energy.greater stability.
Covalent bonded atoms can rotate freely about a sigma molecular orbital

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2
Q

Summing up

A

Covalent bonds formed sharing 2 e between 2 atoms

Coordinate formed where both e in bond provide 1 of atoms

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3
Q

Peptide bond

A

Proteins are polymers of aa
Between the carboxyl group
Causes condensation reaction
Hybridisation of atomic orbitals have same energy level

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4
Q

Cont

A
Max the number of covalent bonds
Stable the atom
3 of 4 orbitals hybridise
Form sigma bonds
E move between p orbitals
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5
Q

Cont

A
Peptide bond has a partial double bond character
Rigid if peptide bond
Reduces freedom if folding 
Double bond character 
6 atoms involved
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6
Q

Cont

A

Peptide bond is invariably found in the trans confirmation
Donation of electrons
Atom make the carbonyl less elextrophiillic

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7
Q

Cont

A
Special amino acid proline 
Unusual in amino group
Proline forms peptide bonds
Ring structure
Lacks a parietal double bond 
Rotation in peptide bond
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8
Q

Interactions between molecules

A
Molecules must interact bind
Initiate an action
Enzyme binding to its substrate 
Hormone binding to its receptor 
RNA being transcribed on DNA template
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9
Q

Cont

A
Regnition
Intermolecular interactions 
Known as electrostatic or hydrophobic in nature
Classify as hydrogen bonding 
Short range
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10
Q

Hydrogen bonding

A

Occurs between water molecules
Electronegative oxygen draws electrons
Slight pos charge
Has two lone pairs

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11
Q

Cont

A
Strong electronegative atom
There is an acceptor
There is a donor 
Has special characteristics 
The bond would be aligned
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12
Q

Cont

A
Distances and orientations
Optimum length 
Occur between purine and pryrinidibe base 
I opposite DNA
Genetic code
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13
Q

Charge charge interactions

A

Electrostatic in nature
Distances between interacting groups not fixed
Acidic or basic group
Has a lone pair of electrons

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14
Q

Cont

A

Interaction may be attractive or repulsive
Charge at physiological ph
Protein has aa
Long peptide chains
Interaction between charged groups ph dependant

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15
Q

Short range charge charge interaction

A
Short distances 
Van der walls 
Weak attraction 
Atom negative charged
Temporary dipole
16
Q

Cont

A
Induce a dipole
Constant movement 
Redistribution
Complicated
Fluctuating changes
Dipoles constant produced
17
Q

Hydrophobic interactions

A

Hydrophobic means hating water
It’s a polar
Insoluble in water and does not interact with it

18
Q

Hydrophilic

A

Polar
Soluble
Positive

19
Q

Cont

A
Contain electro negativity 
Induce a dipole
Unequal disruption of charge
Water is a polar molecules
Polar groups are general soluble in water
20
Q

Cont

A

No particularly electronegative atoms

All biological molecules interact and short lived

21
Q

Summing up

A

Intermolecular are weak
Collectively strong
Hydrogen bonds are strong

22
Q

Solubility in water

A
Intricately involves solubility 
Solvent - solvent
Solute- solute
Solvent - solute
Biological molecules is lipids inc fats oils and waxes
23
Q

Cont

A

Fatty acids has a long hydrocarbon chain and is a polar
Terminates in a polar group
Amphipathic
Phospholipid molecules form bilayer

24
Q

Cont

A

Steroid molecule has choler sterol
Outer membranes of cells
Pharmacology studies show the absorption. Metabolism. Distribution. Drugs on the body