Biochemistry - Metabolism Part 1 Flashcards
Fatty acid oxidation occurs in the _____ (mitochondria/cytoplasm), whereas fatty acid synthesis occurs in the _____ (mitochondria/cytoplasm).
Mitochondria; cytoplasm
Glycolysis occurs in the _____ (mitochondria/cytoplasm), whereas the Krebs cycle occurs in the _____ (mitochondria/cytoplasm).
Cytoplasm; mitochondria
Where in the cell are the enzymes of the hexose monophosphate shunt located?
In the cytoplasm
Where in the cell does acetyl coenzyme A production occur?
In the mitochondria
Protein synthesis occurs on the _____ (rough/smooth) endoplasmic reticulum, whereas steroid synthesis occurs on the _____ (rough/smooth) endoplasmic reticulum.
Rough; smooth
Name the three pathways that occur in both the cytoplasm and the mitochondria.
Heme synthesis, the Urea cycle, and Gluconeogenesis; remember the mnemonic: HUGs take two
Name four pathways that occur exclusively in the mitochondria.
Fatty acid oxidation, acetyl-CoA production, Krebs cycle, and oxidative phosphorylation
Describe the function of a kinase.
An enzyme that utilizes adenosine triphosphate to add high-energy phosphate group onto substrate
Describe the function of a phosphorylase.
An enzyme that adds inorganic phosphate onto substrate without utilizing adenosine triphosphate
Describe the function of a phosphatase.
An enzyme that removes phosphate group from substrate
Describe the function of a dehydrogenase.
An enzyme that oxidizes substrate
Describe the function of a carboxylase.
An enzyme that adds one carbon with biotin as a cofactor
What is the rate-determining enzyme of de novo pyrimidine synthesis?
Carbamoyl phosphate synthetase II
Carbamoyl phosphate synthetase II is the rate-limiting enzyme of which metabolic process?
De novo pyrimidine synthesis
What is the rate-determining enzyme of de novo purine synthesis?
Glutamine-phosphoribosyl pyrophosphate amidotransferase
Glutamine-phosphoribosyl pyrophosphate amidotransferase is the rate-limiting enzyme of which metabolic process?
De novo purine synthesis
What is the rate-determining enzyme of glycolysis?
Phosphofructokinase-1
Phosphofructokinase-1 is the rate-limiting enzyme of which metabolic process?
Glycolysis
What is the rate-determining enzyme of gluconeogenesis?
Fructose-1,6- bisphosphatase
Fructose-1,6- bisphosphatase is the rate-limiting enzyme of which metabolic process?
Gluconeogenesis
What is the rate-determining enzyme of the tricarboxylic acid cycle?
Isocitrate dehydrogenase
Isocitrate dehydrogenase is the rate-limiting enzyme of which metabolic process?
The tricarboxylic acid cycle
What is the rate-determining enzyme of glycogen synthesis?
Glycogen synthase
Glycogen synthase is the rate-limiting enzyme of which metabolic process?
Glycogen synthesis
What is the rate-determining enzyme of glycogenolysis?
Glycogen phosphorylase
Glycogen phosphorylase is the rate-limiting enzyme of which metabolic process?
Glycogenolysis
What is the rate-determining enzyme of the hexose monophosphate shunt?
Glucose-6-phosphate dehydrogenase
Glucose-6-phosphate dehydrogenase is the rate-limiting enzyme of which metabolic process?
The hexose monophosphate shunt
What is the rate-determining enzyme of fatty acid synthesis?
Acetyl-CoA carboxylase
Acetyl-CoA carboxylase is the rate-limiting enzyme of which metabolic process?
Fatty acid synthesis
What is the rate-determining enzyme of fatty acid oxidation?
Carnitine acetyltransferase I
Carnitine acyltransferase I is the rate-limiting enzyme of which metabolic process?
Fatty acid oxidation
What is the rate-determining enzyme of ketogenesis?
HMG-CoA synthase
HMG-CoA synthase is the rate-limiting enzyme of which metabolic process?
Ketogenesis
What is the rate-determining enzyme of cholesterol synthesis?
HMG-CoA reductase
HMG-CoA reductase is the rate-limiting enzyme of which metabolic process?
Cholesterol synthesis
What is the rate-determining enzyme of the urea cycle?
Carbamoyl phosphate synthetase I
Carbamoyl phosphate synthetase I is the rate-limiting enzyme of which metabolic process?
The urea cycle
What is the name of the molecule that contains adenine, ribose, three phosphoryl groups, and two phosphoanhydride bonds?
Adenosine triphosphate
In which two organs is adenosine triphosphate produced from the aerobic metabolism of glucose via the malate-aspartate shuttle?
Heart and liver
How many adenosine triphosphate molecules are produced from the aerobic metabolism of glucose via the malate-aspartate shuttle?
32
How many adenosine triphosphate molecules are produced from the aerobic metabolism of glucose via the glyceraldehyde-3-phosphate shuttle?
30; this occurs in the muscle
Where does the energy come from in order to proceed from substrate to product in energetically unfavorable reactions?
The hydrolysis of adenosine triphosphate can be coupled with energetically unfavorable reactions to produce enough net energy
What is the net gain of adenosine triphosphate molecules after a molecule of glucose has participated in anaerobic glycolysis?
Two; the NADH created cannot be used to generate energy without oxygen
A glucose molecule is metabolized to the level of pyruvate and lactate; is this process an anaerobic or aerobic process?
An anaerobic process; no oxygen has been used in this reaction
Name the three activated carriers of electrons.
NADH, NADPH, FADH2
What is the activated carrier for phosphoryl groups?
Adenosine triphosphate
What molecule donates methyl groups?
S-adenosylmethionine
Which activated carrier molecule donates aldehyde groups?
Thiamin pyrophosphate
Acyl groups are transported using which two activated carriers?
Coenzyme A and lipoamide
What compounds are used as single-carbon donors in various reactions?
Tetrahydrofolates
What vitamin is the donor of the carboxyl group used in many biochemical reactions in the body?
Biotin
What pathway produces NADPH?
The hexose monophosphate shunt
Which molecule is used in catabolic processes as an acceptor of reducing equivalents?
NAD+
Catabolic processes generally use _____ (NAD+/NADPH) as an electron acceptor, whereas anabolic processes generally use _____ (NAD+/NADPH) as an electron donor.
NAD+ ; NADPH
Name the three universal electron acceptors.
NAD+, NADP+, and FAD+
In which four metabolic processes is NADPH consumed?
Anabolic processes, respiratory burst, P450, glutathione reductase
What is the enzymatic reaction catalyzed by hexokinase and glucokinase?
Both enzymes phosphorylate glucose to form glucose-6-phosphate
In the liver, formation of glucose-6-phosphate is the first step of which 2 reactions?
Glycolysis and glycogen synthesis
Which two locations in the body contain high concentrations of glucokinase?
The liver and cells of the pancreas; hexokinase predominates in the rest of the body
Which enzyme has a higher Km: glucokinase or hexokinase?
Glucokinase; this enzyme has no feedback-inhibition loop with glucose-6-phosphate, because its job is to store excess energy after a meal
Which enzyme has a higher affinity for glucose: glucokinase or hexokinase?
Hexokinase; this enzyme has a feedback-inhibition loop with glucose-6-phosphate, because its job is just to keep the cells supplied with energy
Which enzyme has a higher Vmax: glucokinase or hexokinase?
Glucokinase; this enzyme has no feedback-inhibition loop with glucose-6-phosphate, because its job is to store excess energy after a meal (remember: GLUcokinase is a GLUtton; it has a high Vmaxbecause it cannot be satisfied)
Which enzyme has a greater capacity to convert glucose to glucose-6-phosphate: glucokinase or hexokinase?
Glucokinase; this enzyme has no feedback-inhibition loop with glucose-6-phosphate, because its job is to store excess energy after a meal and buffer blood glucose
By what process does glucokinase sequester glucose in the liver to prevent blood glucose spikes after meals?
Phosphorylation
Which enzyme is induced by insulin: hexokinase or glucokinase?
Glucokinase
What is the effect of glucokinase on the blood glucose level?
By storing excess glucose in the liver, the liver can act as a buffer to regulate the blood glucose level
Where in the cell are the reactions that produce 2 pyruvate molecules from 1 glucose?
In the cytoplasm
In glycolysis, what enzyme catalyzes the formation of fructose-1,6 bisphosphate?
Phosphofructokinase-1
In glycolysis, what enzyme catalyzes the rate-limiting step?
Phosphofructokinase-1
Which molecules inhibit phosphofructokinase-1?
Adenosine triphosphate and citrate inhibit phosphofructokinase-1 since glycolysis is unnecessary in an energy-replete cell
In glycolysis, the reactions catalyzed by what five enzymes are irreversible?
Hexokinase, glucokinase, phosphofructokinase-1, pyruvate kinase, and pyruvate dehydrogenase
Is citrate an activator or an inhibitor of the enzyme that catalyzes the rate-limiting step in glycolysis?
Inhibitor
In glycolysis, fructose-2,6-bisphosphate _____ (increases/decreases) the production of fructose-1,6-bisphosphate from fructose-6-phosphate.
Increases
In glycolysis, is adenosine monophosphate an activator or an inhibitor of phosphofructokinase-1?
Activator
Name three compounds that decrease the activity of pyruvate dehydrogenase through negative feedback.
Adenosine triphosphate, NADH, and acetyl-CoA are inhibitors of pyruvate dehydrogenase; they are indicators that a cell is energy replete
In glycolysis, fructose-1,6-bisphosphate _____ (increases/decreases) the activity of pyruvate kinase.
Increases
What enzyme catalyzes the conversion of phosphoenolpyruvate to pyruvate during glycolysis?
Pyruvate kinase
In glycolysis, the formation of acetyl-CoA from pyruvate is catalyzed by what enzyme?
Pyruvate dehydrogenase
In the reaction that produces glucose-6-phosphate from D-glucose, is adenosine triphosphate produced or consumed?
Consumed