BIOCHEMISTRY Flashcards
Amino acids cannot be synthesized by the human body
Essential Amino Acid
Antibiotic that inhibits cell wall synthesis
Bacitracin
Antibiotic that interupt DNA and protein function
Gramicidin A
Dreaded side effect of bleomycin
Pulmonary fibrosis
Other drugs:
Busulfan
Amiodarone
Cyanobacterial peptides lethal (hepatic tumors) in large doses
Microcystin and nodularin
Neurodegenerative disease associated with chick pea and grass pea
Lathyrism
- paraplegia, tremors and muscular weakness
Seed contains neurotoxins risk factors for neurodegenerative diseases ALS and PD
Cycad seeds
Neurotoxic found in cycad seed - natives of Guam
Beta Methylaminoalanine
Potentially toxic L alpha amino acids
ODAP
BMAA
BAPN
Diaminobutyric acid
Homoarginine
Naturally occuring amino acids in brain tissue
Serine and aspartate
Naturally occuring amino acids in gram positive bacteria
Alanine and Glutamate
Bacteria with poly D glutamate capsule
B. anthracis
excretes D-methionine, D-tyrosine, D-leucine and D-trypttophan which triggers biofilm disassembly
B subtilis
Bacteria incorporates leucine and methionine into the peptide component of its peptidoglycan layer
Vibrio cholerae
Amino acid precursor of thyroid hormone
Tyrosine
Precursor of Tyrosine
Phenylalanine
Enzyme catalyzes phenylalanine to tyrosine
Phenylalanine hydroxylase
Neurotransmitter precursor of GABA
Glutamate (excitatory)
enzyme that catalyses glutamate to GABA
Glutamate decarboxylase
Determine classification of amino acid
Side chain
found at the center, attached to four different substituents. It confers optical activity
chiral carbon
Amino acid without chiral carbon. No optical activity. Cannot rotate plane polarized light.
Glycine
Stereoisomer
Enantiomers “mirror image”
Posttranslational modification of amino acid where proline and lysine –> 4 hydroxyproline and 5-hydroxylysine
Collagen synthesis
Posttranslational modification of amino acid where carboxylation of glutamyl residues to y- carboxyglutamyl residues
Blood coagulation cascade
vitamin or cofactor required for collagen synthesis
Vitamin C
Vitamin K dependent clotting factors
Factor 2, 7, 9, 10
Drug inhibits gamma carboxylation of vit K dependent clotting factors
Warfarin/ Coumadin
Warfarin inhibits what pathway?
Extrinsic pathway
W (warfarin) e(extrinsic)
Pt (protime)
condition with vitamin c deficiency
Scurvy
Triple helix structure with glycine-X-Y (proline or hydrodyproline)
Collagen
Molecules that contain an equal number of + and - charged groups bear no net change.
Dipolar ion
Zwitterions
Amino acids contains both acidic and basic group. at physiological pH (~7)
Amphoteric
Used to express the strength of weak acids
pKa
smaller pKa = stronger
larger pKa = weaker
Property of amino acids reflects their ionic character
Solubility
*tryptophan, tyrosine and phenylalanine (aromatic rings) absorb higher wavelenght ultraviolet light
Responsible for formation of esters, amides and acid anhydrides
Carboxylic acid groups
for acylation and esterification
Amino groups
smallest amino acid
glycine
Protein structure - peptide bond
Primary structure
Protein structure - Beta pleated sheets or Alpha helix
Secondary structure
Protein structure - Domains, salt bridges, myoglobin
tertiary structure
Protein structure - hemoglobin
Quaternary structure
Amino acids are linked together by?
Peptide bond
Presence of peptide test (violet in color)
Biuret test
Rate limiting enzyme of pentose phosphate pathway / HMP
Glucose 6 phosphate dehydrogenare
3 amino acids comprises structure of glutathione
glutamyl
cysteinyl
glycine
amino acids with alipathic side chains
Glycine (heme synthesis)
Alanine
Valine
Isoleucine
Leucine
Branched chain amino acid
Valine
Isoleucine
Leucine
congenital deficiency of branched chain amino acid
maple syrup disease
Hydroxyl group amino acid
Serine
Threonine
Tyrosine
amino acids with sulfur atoms
Cysteine
Methionine
1st amino acid in genetic code
Methionine
Amino acids with acidic groups
Aspartic acid
Asparagine
Glutamic acid
Glutamine
Basic amino acids
Histidine
Arginine
Lysine
Precursor of nitric oxide, urea cycle
Arginine
undergoes decarboxylation - Histamine
Histidine
Amino acid with aromatic ring
Phenylalanine
Tryptophan
Histidine
Tyrosine
Precursor of cathecholamines
Tyrosine
Precursor of vit B3 or niacin
Tryptophan
Amino acid with Imino group
Proline
-causes collagen kinks
Atypical amino acids
Pyrrolysine
Selenocycteine
21st amino acid
Selenocysteine
3 stop codons
UAG
UAA
UGA
Mutation when a stop codon is involved
Nonsense mutation
Essential amino acids
Phenylalanine
Valine
Threonine
Tryptophan
Isoleucine
Methionine
Histidine
Arginine
Leucine
Lysin
Always ARGues , never TYRs
Purely ketogenic amino acids
Leucine
Lysine
“KiLL”
Biochemical pathways occur in the mitochondria
Fatty Acid Oxydation
Acetyl CoA
TCA (Krebs cycle)
Oxydative Phosphorylation (Respiratory Chain/ ETC)
Mito FATO
Biochemical pathways occur in the Cytosol and Mitochondria
Heme
Urea
Gluconeogenesis
give BOTH of you a HUG
Where does glycolysis occur?
Cytosol
2 types of glycolysis?
Aerobic and anaerobic
End product of aerobic glycolysis
Pyruvate
End product of anaerobic glycolysis
Lactate
Rate limiting enzyme of glycolysis
Phosphofructokinase (PFK)
Glycogen storage disease with deficiency in Phosphofructokinase (PFK)
Type 7 - Tarui’s disease
Enzyme inhibited by Flouride
Enolase
Other name of glycolysis
Embden Meyerhoff Parnas Pathway
Metabolism of glucose to pyruvate/lactate
Glycolysis
First step in utilization of sugars
Phosphorylation of glucose
Found in most tissue
Low Km
Low Vmax
Hexokinase
H = Humble (low Km low Vmax)
What inhibits hexokinase
Glucose-6-phosphate
What inhibits glucokinase?
Fructose 6 phosphate
What stimulates glucokinase?
Glucose
Insulin
The most potent activator of Phosphofructokinase
Fructose 2, 6 bisphosphate
Well fed or starvation?
Dec glucagon
Inc insulin
Inc frictose 2,6 bisphosphate
Inc glycolysis
Well fed state
Cleaves fructose 1, 6 bisphosphate
Found in the liver and kidney
Aldolase B
Used in the liver and adipose tissue for triglyceride synthesis
Isomerized to become glyceraldehyde 3 phosphate
DHAP - Dihydroxyacetone Phosphate
Deficiency in aldolase B presents
Hemolytic anemia
MOA: competing with inorganic phosphate as substrate for G3P DEHYDROGENASE — complex that spontaneously hydrolyzes to form 3-phosphoglycerate
Arsenic poisoning