biochem: metabolism Flashcards
kinase
used ATP to add a (high E) phosphate group
phosphorylase
adds inorganic phosphate w/o ATP
phosphatase
removes phosphate group
dehydrogenase
catalyzes redox rxns
hydroxylase
adds -OH
carboxylase
transfers CO2 groups w/help from biotin
mutase
relocates a fxnal group w/in a molecule
mitochondrial metabolism
fatty acid oxidation (beta-oxidation), acetyl-CoA production, TCA cycle, oxidative phosphorylation, ketogenesis
cytoplasmic metabolism
glycolysis, fatty acid synthesis, HMP shunt, protein synthesis (RER), steroid synthesis (SER), cholesterol synthesis
mitochondrial AND cytoplasmic metabolism
HUGS take two: Heme synthesis, Urea cycle, Gluconeogenesis
glycolysis rate-limiting enzyme
PFK-1
glycolysis regulators
+: AMP, fructose-2,6-bisphosphate. -: ATP, citrate
gluconeogenesis rate-limiting enzyme
fructose-1,6-bisphosphatase
gluconeogenesis regulators
+: ATP, acetyl-CoA. -: AMP, fructose-2.6-bisphosphate
TCA cycle rate-limiting enzyme
isocitrate dehydrogenase
TCA cycle regulators
+: ADP. -: ATP, NADH
glycogenesis rate-limiting enzyme
flycogen synthase
glycogenesis regulators
+: G6P, insulin, cortisol. -: epinephrine, glucagon
glycogenolysis rate-limiting enzyme
glycogen phosphorylase
glycogenolysis regulators
+: epinephrine, glucagon, AMP. -: G6P, insulin, ATP
HMP shunt rate-limiting enzyme
G6PD
HMP shunt regulators
+:NADP+. -: NADPH
de novo pyrimidine rate-limiting enzyme
carbamoyl phosphate synthetase II
de novo pyrimidine regulators
+: ATP. -: UTP
de novo purine synthesis rate-limiting enzyme
PRPP amidotransferase
de novo purine synthesis regulators
-: AMP, inosine monophosphate (IMP), GMP
urea cycle rate-limiting enzyme
carbamoyl phosphate synthetase I
urea cycle regulators
+: N-acetylglutamate
fatty acid synthesis rate-limiting enzyme
acetyl-CoA carboxylase (ACC)
fatty acid synthesis regulators
+: insulin, citrate. -: glucagon, palmitoyl-CoA
fatty acid oxidation rate-limiting enzyme
carnitine acyltransferase I
fatty acid oxidation regulators
-: malonyl-CoA
ketogenesis rate-limiting enzyme
HMG-CoA synthase
cholesterol synthesis rate-limiting enzyme
HMG-CoA reductase
cholesterol synthesis regulators
+: insulin, thyroxine. -: glucagon, cholesterol
aerobic glucose metabolism
net + 32 ATP via malate-aspartate shuttle (heart and liver), 30 net ATP via glycerol-3-phosphate shuttle (muscle)
anaerobic glycolysis
net + 2 ATP/glucose
arsenic
causes glycolysis to produce 0 net ATP. inhibits lipoic acid. -> vomiting, rice-water stools, garlic breath
activated ATP carries
phosphoryl groups
activated NADH, NADPH, FADH2 carry
electrons
activated CoA, lipoamide carry
acyl groups
activated biotin carries
CO2
activated tetrahydrofolates carry
1-C units
activated S-adenosylmethionine (SAM) carries
CH3 groups
activated TPP carries
aldehydes
NADPH
= product of HMP shunt. used in: anabolic processes, respiratory burst, cytochrome P-450 system, glutathione reductase
universal electron acceptors
NAD+ (from vit B3), NADP+, FAD+ (from vit B2)
NAD+ vs. NADPH
NAD+: generally catabolic, carries reducing equivalents away. NADPH: generally anabolic (e.g. steroid and fatty acid synthesis), supplies reducing equivalents
hexokinase
in most tissues except liver and pancreatic beta cells. low Km (high affinity), low Vmax (low capacity), not induced by insulin. + feedback inhibition by G6P.
glucokinase
in liver, pancreas beta cells. high Km (low affinity), high Vmax (high capacity), induced by insulin. no feedback inhibition by G6P. gene mutation associated w/maturity-onset diabetes of the young
hexokinase vs. glucokinase
both can phosphorylate glucose into G6P: 1st step of glycolysis or glycogen synthesis. low [glu], hexokinase sequesters it in tissues. high [glu], liver stores it
FBPase-2 and PFK-2 in fasting state
inc. glucagon -> inc. cAMP -> inc. PKA -> inc. FBPase-2, dec. PFK-2, less glycolysis, more gluconeogenesis
FBPase-2 and PFK-2 in fed state
inc. insulin -> dec. cAMP -> dec. PKA -> dec. FBPase-2, inc. PFK-2, more glycolysis, less gluconeogenesis
pyruvate dehydrogenase complex
mitochondrial enzyme complex linking glycolysis and TCA cycle. active in fed state. similar to alpha-detoglutarate dehydrogenase complex in TCA cycle. 3 enzymes, 5 cofactors: pyrophosphate, FAD, NAD, CoA, and lipoic acid. exercise -> inc. NAD+/NADH ratio, inc. ADP, inc. Ca 2+ -> activation of complex.
pyruvate dehydrogenase complex deficiency
causes buildup of pyruvate that gets shunted to lactate via LDH and alanine via ALT. X-linked
pyruvate dehydrogenase complex deficiency: findings
neurologic defects, lactic acidosis, inc. serum alanine. starts in infancy
pyruvate dehydrogenase complex deficiency: Tx
inc. intake of ketogenic nutrients (high fat, high lysine and leucine). Lysine and Leucine - the onLy pureLy ketogenic AAs.
4 possible products of pyruvate
alanine, oxaloacetate, acetyl-CoA, lactate
pyruvate -> alanine
via alanine aminotransferase (ALT) w/B6. alanine carries amino groups to liver from muscle. in cytosol
pyruvate -> oxaloacetate
via pyruvate carboxylase (PC) w/biotin. oxaloacetate can replinish TCA cycle of be used in gluconeogenesis. requires CO2 and ATP. in mitochondria
pyruvate -> acetyl-CoA
via pyruvate dehydrogenase (PDH) w/B1, B2, B3, B5, lipoic acid. transition from glycolysis to TCA cycle. NAD+ in, NADH, H+, and CO2 out. occurs in mitochondria.
pyruvate -> lactate
= cori cycle. via LDH w/B3. end of anaerobic glycolysis, the major pathway in RBCs, WBCs, kidney medulla, lens, testes, and cornea.
krebs cycle mnemonic
Citrate Is Krebs’ Starting Substrate For Making Oxaloacetate: Citrate, Isocitrate, alpha-Ketoglutarate, Succinyl-CoA, Succinate, Fumarate, Malate, Oxaloacetate
TCA cycle produces
3 NADH, 1 FADH2, 2CO2, 1 GTP per acetyl-CoA = 10ATP/acetylCoA (2x/glucose).
e- transport chain: ox phos
NADH electrons from glycolysis enter mitochondria via shuttles to complex I. FADH2 electrons are transferred to complex II (lower E than NADH). electron transport creates a proton gradient that is coupled w/ox phos to drive ATP production
NADH -> _ATP
2.5ATP
FADH2 -> _ATP
1.5ATP
electron transport inhibitor poisons
rotenone, cyanide, antimycin A, CO. directly inhibit electron transport, causing a dec. proton gradient and block of ATP synthesis