BIO CHEM II Flashcards

1
Q

The overall chemical reaction of aerobic respiration is:
C6H12O6 + 6 O2 → 6 CO2 + 6 H2O + Energy
Please analyze this reaction carefully, and choose the description which describes it best.

This is a reduction, because oxygen is reduced to water.

This is an oxidation, because glucose is oxidized to carbon dioxide.

This is a redox reaction, wherein oxygen is the electron acceptor and carbon and hydrogen atoms are the electron donors.

This is oxidation, because oxygen atom can be found in at least one of the reactant molecules.

A

This is a redox reaction, wherein oxygen is the electron acceptor and carbon and hydrogen atoms are the electron donors.

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2
Q

Fill in the blank. Glycolysis produces ATP via _____ .

Substrate level phosphorylation
Redox reaction
Oxidation
Isomerization

A

Isomerization

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3
Q

Fill in the blank. Triglycerides ______ chiral carbon atoms.

Always have 1
Always have 2
Always have 3
Do not always have

A

Do not always have

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4
Q

You are a scientist and you want to set up a protein phosphorylation reaction using PKA. You purchased PKA from a biotech company, and the datasheet tells you that PKA requires ATP, cAMP and Mg2+. What could be the role of these reaction mixture ingredients?

ATP and cAMP are coenzymes; Mg2+is a cofactor.

ATP is a substrate; cAMP and Mg2+ are cofactors.

ATP, cAMP, and Mg2+ are cofactors.

ATP is a substrate; cAMP is a coenzyme, and Mg2+ is a cofactor.

A

ATP is a substrate; cAMP is a coenzyme, and Mg2+ is a cofactor.

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5
Q

You are a scientist and you would like to set up a carbon fixation reaction in the test tube. You would like to make glyceraldehyde-3-phosphate [G3P] from carbon dioxide; you would like to mirror the Calvin-Benson cycle. What should you consider, when you design your experiment?

This will be an exergonic reaction, which will produce ATP and other possible high-energy molecules as well.

This will be an exergonic reaction; thus, cooling will be necessary if you would like to avoid the high-energy G3P-driven explosion.

This will be an endergonic reaction; thus, you will need an enzyme to catalyze it.

This will be an endergonic reaction; thus, you will need high energy compounds that can provide the energy, which will be stored in G3P.

A

This will be an endergonic reaction; thus, you will need high energy compounds that can provide the energy, which will be stored in G3P.

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6
Q

Fill in the blank. Bile acids emulsify_____ and expose them for _______ in the small intestine.

Cholesterol, the pancreatic hydrolase
Chylomicrons, apolipoprotein B-100
LDL, LDL receptor
Triglycerides, the pancreatic lipase

A

Triglycerides, the pancreatic lipase

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7
Q

Fill in the blank. Bile acid can emulsify fats, because it is _____.

Hydrophilic
Amphipathic
Lipophilic
Hydrophobic

A

Amphipathic

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8
Q

Fill in the blank. Triglycerides combine with bile to form _____________ and enter the central lacteal of the villi.

Low density lipoproteins
High density lipoproteins
Chylomicrons
Very low density lipoproteins

A

Chylomicrons

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9
Q

β-oxidation breaks down fatty acids to acetyl-CoA, but odd-numbered fatty acids cannot be fully converted into acetyl-CoA. How are odd-numbered fatty acids metabolized?

Odd-numbered fatty acids contribute to the regulation of the Szent-Györgyi-Krebs cycle’s intermediates through giving rise to succinyl-CoA.

Odd-numbered fatty acids do not occur naturally, and there is no metabolic pathway to break them down fully. If industrially produced odd-numbered fatty acids are consumed, then the last three carbon atoms will be excreted as a waste in the form of propionic acid.

Eukaryotic cells cannot break down the last three carbon atoms containing propionyl-CoA, but bacteria in the gastrointestinal tract can. Bacteria will produce methane gas from propionyl-CoA, and this will result in gastrointestinal discomfort.

β-oxidation breaks down fatty acids to acetyl-CoA and propionyl-CoA. Both acetyl-CoA and propionyl-CoA can step into the Szent-Györgyi-Krebs cycle, and they can be used to generate NADH and FADH2 for the electron transport chain.

A

Odd-numbered fatty acids contribute to the regulation of the Szent-Györgyi-Krebs cycle’s intermediates through giving rise to succinyl-CoA.

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10
Q

What is the contribution of fatty acids metabolism to the production of metabolites for biosynthesis and to energy production?

Metabolites for biosynthesis are produced by fatty acid catabolism; only anabolism makes energy.

Metabolites for biosynthesis are produced by fatty acid anabolism; only catabolism makes energy.

Metabolites for biosynthesis are produced by fatty acid catabolism and anabolism; only catabolism makes energy.

Metabolites for biosynthesis are produced by fatty acid catabolism; both anabolism and catabolism make energy.

A

Metabolites for biosynthesis are produced by fatty acid catabolism and anabolism; only catabolism makes energy.

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11
Q

Fill in the blank. The synthesis of__________ is the first step of fatty acid synthesis; this metabolite inhibits carnitine palmitoyltransferase, which controls fatty acid oxidation.

Malonyl-CoA
Acetyl-CoA
Citric acid
Succinyl-CoA

A

Malonyl-CoA

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12
Q

Fill in the blanks. ___________ the end product of β-oxidation, which contributes to ___________ in the first step of the Szent-Györgyi-Krebs cycle. An increased level of the latter activates fatty acid synthesis through the activation of acetyl-CoA carboxylase.

Carbon dioxide is, NADH and FADH2
Acetyl-CoA is, oxaloacetic acid
Acetyl-CoA is, citric acid
Acetyl-CoA and glycerol are, ATP

A

Acetyl-CoA is, citric acid

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13
Q

Fill in the blank. Both fatty acid synthesis and catabolism takes place through a series of ___________ reactions.

Elimination
Dehydration synthesis
Substitution
Redox

A

Redox

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14
Q

Medium chain acyl-CoA dehydrogenase (MCAD) deficiency affects 1 in 17000 people in the United States. Why should MCAD deficient people avoid prolonged fasting?

High glucagon level during fasting activates fatty acid oxidation, which cannot be completed due to MCAD deficiency. Fatty acids will be increasingly retained in the adipose tissue, and this will result in obesity.

High glucagon levels during fasting activate fatty acid oxidation, which in turn inhibits glucose oxidation. If glucose oxidation cannot be inhibited as the result of MCAD deficiency, then the brain will not get sufficient glucose.

This is a common misconception. MCAD deficient people are simple lucky, because they can eat fatty food. Most of the consumed fat is excreted in the form of medium chain fatty acids, and their adipose tissue cannot accumulate in excess.

MCAD deficient people do not have efficient fatty acid catabolism in their brain, because most of the fat energy is lost during the excretion of medium chain fatty acids.

A

High glucagon levels during fasting activate fatty acid oxidation, which in turn inhibits glucose oxidation. If glucose oxidation cannot be inhibited as the result of MCAD deficiency, then the brain will not get sufficient glucose.

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15
Q

Fill in the blank. Linoleic acid and linolenic acid cannot be synthesized in human tissues, because ____________.

Human cells can synthesize only mono-unsaturated fatty acids.

Humans are diploid organisms; only polyploid organisms have enough genes for the biosynthesis of theses fatty acids.

The corresponding biosynthetic pathway was lost during evolution.

Human cells cannot synthesize unsaturated fatty acids.

A

The corresponding biosynthetic pathway was lost during evolution.

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16
Q

Why can termites digest cellulose?

Their digestive tract secretes β-glucosidase.
Bacteria in their digestive tract secrete β-glucosidase
Their digestive tract secretes α-glucosidase.
Bacteria in their digestive tract secrete α-glucosidase.

A

Bacteria in their digestive tract secrete β-glucosidase

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17
Q

Which enzyme is a key regulator of glycolysis?

Hexokinase
Glucose 6-phosphate
Phosphofructokinase
Pyruvate kinase

A

Glucose 6-phosphate

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18
Q

Fill in the blank. ATP is required for the activity of phosphofructokinase, but high ATP level inhibits its activity. This is because ATP _____________.

Is both a substrate and an allosteric inhibitor of phosphofructokinase

Is both an allosteric activator and an allosteric inhibitor of phosphofructokinase

Is used only when there is plenty in the cell

Level decreases immediately in the presence of phosphofructokinase

A

Is used only when there is plenty in the cell

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19
Q

Fill in the blank. Both ATP and citric acid are allosteric inhibitors of the phosphofructokinase enzyme. High levels of these compounds indicate that ________________.

The cellular respiration is not going on efficiently, but the ATP level is sufficient

The cellular respiration is efficiently going on, and it is producing sufficient ATP

Phosphofructokinase expression is inhibited by ATP and citric acid

Phosphofructokinase is a subject of negative feedback inhibition as the first enzyme of the glycolytic pathway

A

The cellular respiration is not going on efficiently, but the ATP level is sufficient

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20
Q

Fill in the blank. Fermentation recycles ______, thus glycolysis can produce more ATP.

FADH2
NADP+
NAD+
AMP

A

NAD+

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21
Q

What is the final electron acceptor during fermentation?

A coenzyme
NADH
ATP
An organic molecule

A

An organic molecule

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22
Q

Fill in the blanks. Louis Pasteur, a French chemist, was the first to determine that the presence of some microorganism results in ____fermentation, while other microorganisms produce _____.

Alcoholic, acid
Acidic, carbon dioxide
Alcoholic, carbon dioxide
Ethanol, lactic acid

A

Alcoholic, acid

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23
Q

Fill in the blanks. The cyclic and the linear light reactions produce ATP, but only the ______ light reaction makes _______.

Cyclic, NADH
Cyclic, NADPH
Linear, NADPH
Linear, NADH

A

Linear, NADPH

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24
Q

Fill in the blank. A eukaryotic cell that has insufficient amount of oxaloacetate _____.

Will complete the cellular respiration of glucose to carbon dioxide, because the involved pathways do not produce net oxaloacetate.
Will not be able to survive, because it cannot complete cellular respiration.
Will produce two ATP molecules per glucose, and it will recycle NAD+ with fermentation.
Will have increased carbon dioxide binding, thus it will be able to perform carbon fixation more efficiently.

A

Will produce two ATP molecules per glucose, and it will recycle NAD+ with fermentation.

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25
Q

Fill in the blank. A eukaryotic cell that lacks ribulose 1,5-bisphosphate is a(n) _________.

Chemoautotroph
Photoheterotroph
Autotroph
Heterotroph

A

Heterotroph

26
Q

Fill in the blank. A eukaryotic cell which harvests light energy with only the cyclic light reaction _____________.

Will need a light reaction independent NADPH source to perform carbon fixation

Can fully support carbon fixation with the cyclic light reaction

Will employ an NADPH independent way of carbon fixation

Will become heterotroph

A

Will need a light reaction independent NADPH source to perform carbon fixation

27
Q

Glycolysis and the pentose phosphate pathway are alternatives, but the pentose phosphate pathway is less efficient in ATP production. Is there a special need for the pentose phosphate pathway in the cell?

Glycolysis and the pentose phosphate pathway are completely interchangeable.

The pentose phosphate pathway produces metabolites for the synthesis of essential amino acids.

The pentose phosphate pathway is used, when the cell has high ATP levels, and it is not very important to extract as much energy as possible from one glucose molecule.

The pentose phosphate pathway produces essential metabolites for nucleotide synthesis and NADPH.

A

The pentose phosphate pathway produces essential metabolites for nucleotide synthesis and NADPH.

28
Q

What is similar in the Szent-Györgyi-Krebs and the Calvin-Benson cycles?

Both the Calvin-Benson and the Szent-Györgyi-Krebs cycles have key metabolites that are necessary to start the cycle: oxaloacetic acid for the Szent-Györgyi-Krebs cycle, and ribulose 1,5-bisphosphate for the Calvin-Benson cycle.

Both the Calvin-Benson and the Szent-Györgyi-Krebs cycles make ATP and other high energy molecules.

Both metabolic cycles result in the production of carbon dioxide.

The primary role of both pathways is the production of NADH and FADH2 for the electron transport chain.

A

Both the Calvin-Benson and the Szent-Györgyi-Krebs cycles have key metabolites that are necessary to start the cycle: oxaloacetic acid for the Szent-Györgyi-Krebs cycle, and ribulose 1,5-bisphosphate for the Calvin-Benson cycle.

29
Q

What is different in the Szent-Györgyi-Krebs and the Calvin-Benson cycles?

The Szent-Györgyi-Krebs cycle breaks down a triose to carbon dioxide; the Calvin-Benson cycle synthesizes a triose from carbon dioxide.

The Calvin-Benson cycle requires NADH, while the Szent-Györgyi-Krebs makes NADH.

The Szent-Györgyi-Krebs cycle breaks down an organic molecule to carbon dioxide; the Calvin-Benson cycle synthesizes an organic molecule from carbon dioxide.

The Szent-Györgyi-Krebs cycle requires high energy molecules for carbon dioxide production; the Calvin-Benson cycle produces high energy molecules as a byproduct of triose synthesis.

A

The Szent-Györgyi-Krebs cycle breaks down an organic molecule to carbon dioxide; the Calvin-Benson cycle synthesizes an organic molecule from carbon dioxide.

30
Q

Fill in the blank. Linoleic acid and linolenic acid cannot be synthesized in human tissues, because ____________.

Human cells can synthesize only polar amino acids.

Humans are diploid organisms; only polyploid organisms have enough genes for the biosynthesis of BRCAs.

The corresponding biosynthetic pathway was lost during evolution.

Human cells cannot synthesize apolar amino acids.

A

The corresponding biosynthetic pathway was lost during evolution.

31
Q

Fill in the blank. Essential amino acids are those that cannot be produced by an organism, e.g. _____ has no essential amino acid, but all amino acids are essential for _______.

Escherichia coli, algae
Escherichia coli, Lactobacteria
Plants, humans
Lactobacteria, humans.

A

Escherichia coli, Lactobacteria

32
Q

Fill in the blanks. Metabolic diseases may render an otherwise nonessential amino acid to become essential. For example, the inherited metabolic disease _______, moves _______ to the essential amino acid category in affected individuals.

Phenylketonuria, phenylalanine

Maple syrup urine disease, branched chained amino acids

Alkaptonuria, tyrosine

Phenylketonuria, tyrosine

A

Phenylketonuria, phenylalanine

33
Q

How many amino acids are essential?

For some species all amino acids are essential, for others none are essential.

There are nine essential amino acids.

Plants and fungi have none; for every other species, 9 amino acids are essential.

There are 10 essential amino acids.

A

There are nine essential amino acids.

34
Q

Complete the sentence. Ornithine is essential in the urea cycle, because ______________.

It is converted to arginine, and arginine is used in protein synthesis

The urea cycle requires the presence of ornithine as a starter molecule, and it is being recycled as the nitrogen leaves the cycle in the form of urea

Ornithine delivers the nitrogen from amino acid catalysis into the cycle

Ornithine is cycling between the cytosol and the mitochondria during the cycle

A

It is converted to arginine, and arginine is used in protein synthesis

35
Q

What is a common way of regulating amino acid synthesis?

Many amino acids are allosteric inhibitors of an early step of their own anabolic pathway.

Many amino acids are competitive inhibitors of their own anabolic pathway.

Many amino acids are allosteric activators of an early step of their own anabolic pathway.

Most amino acids originate from the breakdown of proteins; the amino acid anabolic pathways are hardly used and are not regulated anymore.

A

Many amino acids are allosteric inhibitors of an early step of their own anabolic pathway.

36
Q

What regulates the committed step of the urea cycle?

The excess of glutamate
Low levels of urea
High levels of ornithine
The absence of citrulline

A

The excess of glutamate

37
Q

Which statement best describes the metabolism of amino acids?

Glutamate is involved in both amino acid synthesis and amino acid breakdown.

Glutamate is involved only in the deamination of other amino acids.

The amino acid catabolism and the amino acid synthesis pathways do not overlap.

Pyridoxal phosphate is a coenzyme for transamination reactions.

A

Glutamate is involved in both amino acid synthesis and amino acid breakdown.

38
Q

Which of the following best describes a transaminases catalyzed reaction?

It is an elimination reaction, because it results in the removal of the amino group from the amino acid.

It is a substitution reaction, because the amino group is exchanged to ketone group.

It is an oxidation, because the α-carbon is oxidized in the product.

It is a redox reaction, because the α-carbon is oxidized in the product.

A

It is a redox reaction, because the α-carbon is oxidized in the product.

39
Q

Which enzymes are used during both the biosynthesis and the catabolism of amino acid?

Transaminases
Transcarbamilases
Phosphoenolpyrivate kinase and phosphatase
Dighydroxiacid dehydratases

A

Transaminases

40
Q

What is the fate of the carbone skeleton during amino acid catabolism?

It can be stored in fats.
It can be stored in glucose.
It can be stored in fats and glucose.
It always released as carbon dioxide.

A

It can be stored in glucose.

41
Q

Which metabolic pathway has the intermediate which is used to start the biosynthesis of all branch chain amino acids?

Glycolysis
Calvin-Benson cycle
Szent-Györgyi-Krebs cycle
Alanine cycle

A

Szent-Györgyi-Krebs cycle

42
Q

Fill in the blank. If the urea cycle does not work efficiently, the blood ____ levels will increase.

Amino acid
Ammonia
Glutamine
Glutamate

A

Ammonia

43
Q

Fill in the blank. High ammonia levels _______.

Result from the breakdown of urea in the urea cycle.

Result in unnecessary amino acid production, and excessive protein synthesis.

Decrease glutamate levels, thus it interferes with neuronal signal transduction.

Result from the breakdown of carbamoyl phosphate at the end of the urea cycle.

A

Decrease glutamate levels, thus it interferes with neuronal signal transduction

44
Q

Which metabolic pathway has the intermediate which is used to start the biosynthesis of all aromatic amino acids?

Glycolysis
Calvin-Benson cycle
Szent-Györgyi-Krebs cycle
Alanine cycle

A

Glycolysis

45
Q

Which metabolic pathway has the intermediate which is used to start the biosynthesis of threonine and glutamate?

Glycolysis
Calvin-Benson cycle
Szent-Györgyi-Krebs cycle
Alanine cycle

A

Szent-Györgyi-Krebs cycle

46
Q

Which metabolic pathway has the intermediate which is used to start the biosynthesis of histidine?

Pentose phosphate pathway
Calvin-Benson cycle
Szent-Györgyi-Krebs cycle
Alanine cycle

A

Pentose phosphate pathway

47
Q

What is the heterocyclic intermediate of the purine nucleotide interconversion?

AMP
IMP
GMP
Uric acid

A

IMP

48
Q

Which nucleotides are used as energy source by the cell?

ATP is the only nucleotide that is used as the source of energy in anabolic reactions.

ATP is the most commonly used, but GTP, CTP, and UTP are used as well.

GTP is used during protein synthesis, but every other anabolic pathway utilizes ATP.

ATP is the energy source in anabolic reactions, but catabolic reactions use GTP, CTP, and UTP.

A

ATP is the most commonly used, but GTP, CTP, and UTP are used as well.

49
Q

Which metabolite is involved in both the salvage of adenine and the biosynthesis of adenosine-5’-monophosphate?

inosine-5’-monophosphate
Hypoxanthine
Ribose-5-phosphate
5-phosphoribosyl-1-ribophosphate

A

5-phosphoribosyl-1-ribophosphate

50
Q

The relative activity of kinases determines the nucleotide levels in the cell. Which nucleotides have the highest levels?

The NMP levels are highest, because the cell invests in NDP and NTP synthesis only as needed.

The NMP levels are highest, because the nucleoside kinases are the most active.

The NTP levels are highest, because the NDP kinases are the most active.

The NDP levels are highest, because the NMP kinases are the most active.

A

The NTP levels are highest, because the NDP kinases are the most active.

51
Q

Fill in the blanks. ___________ is synthesized from glutamine for pyrimidine biosynthesis, but for amino acid catabolism, it is derived from ____________ bicarbonate.

α-ketoglutarate, carbamate or
α-ketoglutarate, ammonia and
Carbamoyl phosphate, carbamate or
Carbamoyl phosphate, ammonia and

A

Carbamoyl phosphate, ammonia and

52
Q

Fill in the blanks. The __________cycle catabolizes AMP to ___________.

Calvin-Benson, glyceraldehyde-3-phosphate
Purine nucleotide, fumarate
Szent-Györgyi-Krebs, fumarate
Citric acid, oxaloacetic acid

A

Purine nucleotide, fumarate

53
Q

The most common genetically inherited SCID affects the enzyme adenosine deaminase. This deficiency results in which of the following?

dATP accumulation and the general inhibition of dNTP synthesis from NTPs

dATP accumulation and the general inhibition of RNA synthesis

AMP accumulation and the selective inhibition of GMP synthesis

AMP accumulation and the selective inhibition of IMP synthesis

A

dATP accumulation and the general inhibition of dNTP synthesis from NTPs

54
Q

Fill in the blank. Glutamine and _____ are building blocks of pyrimidine base biosynthesis.

Aspartate
10-formyl tetrahydrofolate
Glycine
5-Phosphoribosil-1-phosphate

A

Aspartate

55
Q

Fill in the blanks. Glutamine, aspartate, and _________ are building blocks of __________ base synthesis.

10-formyl tetrahydrofolate, purine and pyrimidine
10-formyl tetrahydrofolate, purine
Glycine, pyrimidine
5-Phosphoribosil-1-phosphate, purine and pyrimidine

A

10-formyl tetrahydrofolate, purine

56
Q

The end product of purine base metabolism is uric acid, and its accumulation may lead to gout formation. Which drug may be used to lower uric acid levels?

PRPP, which inhibits de novo IMP synthesis
Hypoxanthine, which inhibits xanthine oxidase
Allopurinol, which is an isomer of hypoxanthine
Oxypurinol, which is an isomer of hypoxanthine

A

Allopurinol, which is an isomer of hypoxanthine

57
Q

Fill in the blank. The biosynthesis of purine and pyrimidine nucleosides utilize _____, which is an activated sugar.

Adenosine-5’-triphosphate
5-Phosphoribosil-1-phosphate
5-Phosphoribosil-1-pyrophosphate
Guanosine-5’-triphosphate

A

5-Phosphoribosil-1-pyrophosphate

58
Q

Question 98
Fill in the blank. De novo nucleotide synthesis results in ____, which can be reduced to ______ as needed.

Ribonucleotides, deoxyribonucleotides

Deoxyribonucleotides, ribonucleotides

Inosine-5’-monophosphate, guanine-5’-monophosphate

Uric acid, adenosine-5’-monophosphate

A

Ribonucleotides, deoxyribonucleotides

59
Q

Fill in the blank. Vitamin B12 deficiency inhibits DNA synthesis, because it ____.

Is the precursor of tetrahydrofolate
Interferes with dTMP synthesis
Interferes with dUMP synthesis
Activates glycine synthesis

A

Interferes with dTMP synthesis

60
Q

What are the regulators of ribonucleotide reductase?

The active site of the enzyme is a complement only to the ribose part of the nucleotide, and its activity is allosterically regulated by the dGTP: GTP ratio.

ATP is an activator and dATP is an inhibitor of this enzyme, and all four dNTPs are produced simultaneously.

Each ribonucleotide reductase enzyme is specific to one NTP substrate, and its activity is negatively regulated by high levels of the corresponding dNTP.

ATP is an activator and dATP is an inhibitor of this enzyme. Furthermore, all four dNTPs adjust the specificity of this broad spectrum enzyme.

A

ATP is an activator and dATP is an inhibitor of this enzyme. Furthermore, all four dNTPs adjust the specificity of this broad spectrum enzyme.

61
Q

END

A

END