5: Genes in Populations Flashcards

1
Q

What is genotype frequency

A

Freq of a particular one-locus genotype in a population

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2
Q

What is allele frequency

A

Freq of a particular allele in a population

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3
Q

Formula for the freq of M

Formula for the freq of m

A

M = P + 0.5*H = p

m = Q + 0.5*H = q

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4
Q

What are P, H and Q

A

P = freq MM
H = freq Mm
Q = freq mm

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5
Q

What are p and q

A

p = freq M
q = freq m

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6
Q

Formulas for freq of MM, Mm, and mm

A

MM = p^2
Mm = 2(p)(q)
mm =q^2

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7
Q

What is Hardy-Weinberg Equilibrium

A

a relationship between allele and genotype frequencies established by random mating that can remain constant from one generation to the next

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8
Q

How many generations before we’re in HWE

A

After just one generation of random mating

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9
Q

Equations for P, H, Q under hardy-weinberg

A

P = p^2
H= 2pq
Q = q^2

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10
Q

What do we mean by ‘forces that disrupt HWE’

A

Things that change allele or genotype frequencies across generations or prevent P=p^2, H=2pq, Q=q^2 from being a good approximation

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11
Q

What is HWE used for

A

Making predictions - not perfectly adhered to
If values deviate a lot from HWE can indicate errors in genotyping

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12
Q

How would we reduce frequency of the m allele

A

Selecting only MM and Mm to become parents

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13
Q

Slide 17

A

Good example

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14
Q

What forces can disrupt HWE

A

Selection
Migration
Random drift
Non-random mating (inbreeding and outbreeding)

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15
Q

What is selection

A

Favoring certain genotypes to become parents; changes allele and genotype frequencies across generations

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16
Q

What is migration

A

Adding or removing individuals of certain genotypes can change allele and genotype freq across generations, cause deviations from HWE equations

17
Q

What is random drift

A

Changes in allele and genotype frequencies across generations in small populations due to chance

18
Q

What is inbreeding

A

Mating individuals who are closely related. Tends to increase homozygous genotypes in progeny compared to what you get with random mating

19
Q

What is outbreeding

A

Mating individuals who are very distantly related (unrelated). Tends to increase heterozygosity in progeny compared to predictions of HWE

20
Q

Example of random drift

A

Small population of rabbits with .5 p (freq of A) and .5 q
Only five rabbits reproduce, and they all happen to be AA or Aa
In the next generation p will be .7 and q will be .3
Only two rabbits reproduce to make the third generation, now p is 1 and q is 0

21
Q

What is fixation

A

One genotype is lost; population is ‘fixed’ at this locus
Particular allele becomes the only allele at its locus in a population

22
Q

Random mating vs inbreeding

A

RM: any genotype mates with any genotype
Inbreeding: tendency for like genotypes to mate (=more homozygotes)

23
Q

Random mating vs outbreeding

A

RM: any genotype mates with any genotype
Outbreeding: tendency for unlike genotypes to mate (= more heterozygotes)

24
Q

How does inbreeding affect simply-inherited traits

A

Increases uniformity of these traits, helping to ‘fix’ alleles (e.g. coat colour)
BUT increases the risk of recessive disease alleles becoming homozygous

25
Q

Effective way of doing outbreeding

A

Cross breeding (males of one breed, female of another)

26
Q

How does outbreeding affect simply inherited traits

A

Might reintroduce unwanted alleles for some simply-inherited traits but reduces risk of recessive disease alleles becoming homozygous

27
Q

Slide 24

A

Recessive disease alleles image

28
Q

How do inbreeding and outbreeding affect polygenic traits

A

Through gene combination value = boost in performance of animals w lots of het genotypes, reduced in animals w lots of homo genotypes (inbreeding)
Outbreeding favourable

29
Q

Boost in performance when outbreeding is called… Reduced performance from inbreeding is called…

A

Hybrid vigor and inbreeding depression

30
Q

How can you use inbreeding and outbreeding in combination for polygenic traits

A

Inbreeding used to create diff populations of inbred animals that r homo at many loci
Inbred populations then crossed (outbreeding) so progeny are hets at many loci
= hybrid vigor

31
Q

Go over example qs in slides

A

27, 16, 17, 13, 8