21.1 Producing DNA fragments Flashcards

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1
Q

What (3) ways are there to obtain DNA fragments?

A
  • reverse transcriptase
  • restriction endonuclease
  • gene machine
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2
Q

main points for using reverse transcriptase to get DNA fragments

A
  • mRNA from cells
  • use reverse transcriptase to form cDNA
  • cDNA isolated by DNA helicase
  • DNA polymerase forms another strand
  • gene made
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3
Q

where is the mRNA taken from?

A

cells that produce the desired protein

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4
Q

what is cDNA?

A

complementary strand to the mRNA

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5
Q

how is the second strand formed?

A

from free nucleotides joined by condensation reaction of the DNA polymerase

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6
Q

how is the cDNA used?

A

used as a template strand

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7
Q

main points for using restriction endonuclease to obtain DNA fragments

A
  • RE recognises recognition site/restriction site
  • cuts at cleavage site
    = produces sticky ends
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8
Q

what are restriction endonuclease enzymes?

A

enzymes that cut DNA at a specific base sequence

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9
Q

what is the restriction site?

A

specific sequence of bases that RE recognise

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10
Q

what is the cleavage site?

A

the site the RE cuts at

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11
Q

how are sticky ends useful? why?

A

allow the binding of DNA from one organism to another as long as the same RE used

  • contain complimentary base pairs
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12
Q

what are sticky ends?

A
  • staggered pieces of DNA that are complimentary to each other
  • produced when RE cuts at cleavage site
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13
Q

main points for using the gene machine to obtain DNA fragments

A
  • desired protein turned into a/a sequence
  • a/a sequence turned into mRNA
  • turned into a DNA sequence
  • use oligonucleotides to form gene
  • use PCR to replicate gene
  • insert into plasmid
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14
Q

what is the DNA made from gene machines checked for?

A
  • biosafety
  • biosecurity
  • ethics
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15
Q

what are oligonucleotides?

A
  • single strands of oligonucleotides
  • overlap
  • short
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16
Q

what are the oligonucleotides used for?

A

making a gene without introns

17
Q

what is PCR?

A
  • polymerase chain reaction
  • makes many double stranded copies of the gene
18
Q

how is the gene inserted into a plasmid?

A
  • cut by RE
  • join using sticky ends
19
Q

how is the plasmid DNA checked?

A

using sequencing techniques

20
Q

what are the advantages of using the gene machine?

A
  • quick
  • no introns = prokaryotes can’t splice introns
  • any sequence of nucleotides
  • accurate