2 The Early Origins Of Life - Evolution From 4500-600 MYA Flashcards

1
Q

Process of Abiogenesis - life emerging from chemistry (early earth chemistry)

A

Early Earth chemistry - are there routes back to ‘building block’ molecules? Urey and Miller 1953

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2
Q

What complex molecules were present from 4500 MYA

A

water / methane / hydrogen / ammonia (small amount of oxygen could also be generated)

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3
Q

Building blocks of life (without life)

A

AA / sugars / lipids and FA

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4
Q

Protocells

A

Lipid membranes - to create a compartment

Long chain FA naturally assemble

Information storage mechanism

Encoded catalysts (in the end were proteins)

Energy storage / transfer (ATP)

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5
Q

The RNA world hypothesis

A

Early life was based on RNA not DNA

DNA has excellent stability but limited chemical reactivity

But lots of spare capacity for reactivity as bases arent internally paired - charged forces

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6
Q

Why was DNA more stable than RNA

A

H bonds between strands removing charge from outside the molecule

RNA is therefore less stable

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7
Q

RNA can be both coding and enzymatic - ribozymes

A

RNA molecules can both encode information (base order) and act as catalysts. Folds to form secondary structures, retain areas of charge and capacity to bond.

RNA can be enzymatic so can fuel chemical reactions - can do protein job and the information job —> that’s why people think that the world was based on RNA

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8
Q

When did life originate - Data from C13/12 (ratio in minerals)

A

Enzymatic process prefer to use C12, so organic carbon produces by biotic process is C12 enrciched and C13 depleated

So if we find carbon in dated minerals, we can assess whether its biologically produced vs through non-enzymatic chemistry (if there is less C13 its likely to be enzymatic as enzymes prefer using C12) —> use of C12/13 ratio

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9
Q

Early planet description (CO2 and O2)

A

Early planet was CO2 rich and O2 low, O2 generated from UV action on H2O but likely rapidly incoperated into metal oxides (FeO / Fe2O3)

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10
Q

Photosynthesis - use of light and infrared radiation

A

Early use of light energy likely to be non-oxygen if photosynthesis - splitting H2S

Use infrared radiation - low energy input for lower energy reaction

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11
Q

Oxygenic photosynthesis

A

Cyanobacteria - ‘blue green algae’ (technacially bacteria)

Use visable light of Hugh energy to split water in presence of CO2 into carbohydrates

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12
Q

Geological evidence of oxygen - crystal deposition patterns

A

Iron pyrites (FeS2) and Uraninite (UO2) —> can only form and be stable at low O2

Lost in geological stars formed after 2.3 BYA in coincident fashion —> stopped forming (shows oxygen was now present)

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13
Q

What if photosynthesis likely evolved before the rise of O2

A

Presence of unoxidised deposit is (or not fully oxidised) metals would absorb O2 generated —> reducing geology. Only when these reducing factors are fully oxidised would O2 start to accumulate.

Fe —> FeO —> Fe2O3 (presence of banded iron formation indicate absorption of O2) 2800-2500MYA

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14
Q

Stromatolites - fossil Cyanobacteria

A

Cyanobacteria mats can create rock formations —> 3800MYA —> evidence of early photosynthesis

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15
Q

Summary of Photosynthesis (the metabolism that changed the world)

A

O2 not present in atmosphere until 2.3BYA but O2 was produces but absorbed before that (banded iron 2.5BYA)

Fossil evidence that photosynthesis evolved between 3.8-2.5BYA

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16
Q

Great oxygenation event (Preston Cloud)

A

Photosynthesis evolved, early O2 —> oxidised metal and once metals oxidised, free O2 rises

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17
Q

What happened 2.45 BYA

A

Previously everything was anaerobic (unless it was photosynthesis) due to the absence of oxygen

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18
Q

Aerobic vs anaerobic efficiency

A

Aerobic is more efficient —> reverse of photosynthesis / equivalent to combustion of sugar

Aerobic is 20x more efficient than anaerobic

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19
Q

Methanogens

A

Release CH4

Archaea only / fermentation (produces EtOH, lactic acid) / anaerobic cellular respuration —> this would have been present pre-oxygenation event

20
Q

Why did O2 levels rise

A

some carbon being fixated in rocks (sedimentary rocks) so oxygen produced from photosynthesis started to rise

21
Q

Symbiotic fusions occur in…

A

The tree of life

22
Q

What are the 3 main domains in the tree of life

A

Bacteria

Archaea

Eucarya

(Eucarya derived from Archaea)

23
Q

Carl Woese

A

rRNA (ribosomal RNA) as encoded in the genome of all living things

‘Structural’ component of ribosomes and perfect ‘deep time’ phylogenetic marker

24
Q

Origins of mitochondria

A

Eukaryotic cells (except obligate anaerobes) have mitochondria

Lynn Margulis - evidence that mitochondria are relict bacteria

Endosymbiosis theory of eukaryotic origins

25
Q

Bacterial aspects of mitochondria

A

Double membrane / contains own circular DNA / divide like bacteria / possess ribosomes - own protein synthesis —> protein synthesis inhibited by same antibiotics as in inhibit protein synthesis in bacteria

Mitochondria have 16S rRNA gene —> derive from alphaproteobacteria (bacteria that lives inside cells)

1500 BYA the mitochondrion was an alphaproteobacteria

26
Q

Alphaproteobacteria

A

Can be found in many invertebrates today (insects)

Adapted to life within eukaryotic cells

Obligate aerobes

27
Q

Evolution of mitochondria since eukaryogenesis

A

Mitochondria as alphaproteobacterium has significantly changed since this time

Mitochondrial genomes are very small - ribosome formation, tRNAs for translation, proteins for electron transfer chain

Most ancestral mitochondrial genes transferred to nucleur genome and proteins targeted back to mitochondrion
- (Mitochondrial) mtDNA - 37 genes

28
Q

Eukaryote genomes are very distinct from archaea

A

Genes in eukaryotes originate from eubacteria and archeae

Core genes for processes - translation tend to be archeal, other genes eubacteria

Archaea as initial cell, acquiring ‘content’ from eubacteria

In this sense, tree of life is a poor metaphor - as its absorbed genetic information from birth eubacteria and archaea

29
Q

Molecular evolution of eukaryotes

A

Happened in the presence of oxygen so must’ve happened after the evolution of Cyanobacterial photosynthesis

Ancestor is about 2 BYA for the mitochondria (rise of oxygen was about 2.6BYA)

Looks like aerobic respiration evolved in bacteria then got symbiotically taken into arches and eukaryotes within 200MYA or so

30
Q

Fossil evidence for evolution of eukaryotes

A

Fossil evidence - micro eukaryote fossils from 1.7-1.4 BYA in China

Eukaryotes most likely evolved between 2 - 1.7 BYA

31
Q

What we don’t know About eukaryote evolution

A

We’re mitochondria acquired late or early —> LECA —> there at the start of life or came after, displaced all other eukaryotes

How did it happen - proto-eukaryote ‘consuming’ a bacterium vs bacterium entering proyoeukaryote

Why did it do it so well —> current mitochondrial function (providing ATP from aerobic metabolism) unlikely to be initial reason (no means of exporting ATP) —> bacterium detoxified cell of O2 (which is potentially damaging to be an anaerobe)

The order of events —> archaea - eukaryote = meny diffenees (mitochonida, nucleus, chromosomes etc)

We don’t know the order of these, drivers, current function mitochondria (ancestral function)

32
Q

Eukaryotic diversity - Origin of photosynthetic eukaryotes

A

Photosynthetic eukaryotes have a single main origin

Archaeplastida - various algae

Viridiplantae - includes variety of green algae and plants

33
Q

Eukaryotic diversity - Origin of chloroplasts

A

Lynn Marguilis considered the chloroplast to be a case of endosymbiosis - a Cyanobacteria symbiotically fused into a eukaryote cell

Double membrane / own DNA (5-10% size of Cyanobacteria genomes) / own ribosomes, rRNA, tRNA / proteins of Cyanobacteria origin in nucleus, targeted to chloroplast

34
Q

Cyanobacteria - how was the origin confirmed

A

16S rRNA —> closely related to chloroplast DNA

35
Q

Cyanobacteria complexity

A

More complex than mitochondria

Archaeplastida algal cells have themselves become symbionts of other eukaryotes —> secondary chloroplasts

Symbiosis with Cyanobacteria occurred more than once

36
Q

More recent evolution of Cyanobacteria symbiont in eukaryotic Amoeba ‘Paulinella’

A

Derived c. 100MYA via symbiosis

Cyanobacterial genome still very large / interesting as amoebae in this group are natural predators of Cyanobacteria —> predation and then maintance as origin

37
Q

Many eukaryotes came to carry plasmids, impact of these (5)

A

Photosynthesis became spread across the eukaryotic tree

Primary edosymbiosis —> archaeplastids

Primary endosymbiosis —> Paulinella

Secondary endosymbiosis —> other algal groups

Lots of primary productivity in oceans and later land

38
Q

Coccolithophores

A

Small eukaryote that live in the sea

39
Q

Coccolithophores photosynthesis

A

Photosynthetic, make CaCO3 shell from dissolved CO2 —> up to 40% of marine primary productivity

40
Q

Coccolithophores (effect on global carbon)

A

Massive carbon sink —> removing CO2

41
Q

Coccolithophores, what geology do they cause

A

Makes geology such as the White Cliffs of Dover (lithosphere - makes stones)

42
Q

bacteriovore / algavore predators

A

instead of digesting bacteria they farm for sucrose

43
Q

Where did decomposers evolve from

A

Micro-eukaryotes

44
Q

Micro eukaryotic diversification produced simple but functional energy cycling (explanation)

A

Primary production (photosynthesis across tree) - alongside Cyanobacteria

Predators and decomposers alongside bacteria

45
Q

When animals and plants arose…

A

Micro eukaryote life evolved to be parasites

46
Q

Corals also require symbiodinium alga

A

Enables construction of coral reefs / major ecosystem

47
Q

Overall summary

A

Life is ancient, but processes leading to origin of life not well resolved.

Photosynthesis was a key innovation that changed the world, providing an oxygenated/oxidising environment

Eukaryotes have origins in symbiotic fusion; eukaryotic genomes remain a chimera of eubacteria/archaebacteria

Photosynthesis spread amongst microeukaryotes; nutrient cycling is present (producers, decomposers, predators, parasites)