Weeks 1-5 Flashcards
Formative 1
What is the difference between prokaryotic, eukaryotic cells and viruses?
What is the role of surface projections?
Prokaryotic = few membrane bound organelles and smaller ribosomes Eukaryotic = have DNA and histones and larger ribosomes Viruses = lack all cell characteristics
Surface projections = Binds eukaryotic cells via cell junctions
What are all the cell properties?
Irritable - react to unnatural things Conductive - pick up, react, pass on things Contractile - can move Absorb and assimilate Excrete and secrete Respire Grow Reproduce
What is a tissue definition and how is it formed?
What part of a cell is compound tissue?
Cellular and extracellular elements assembled to form basis of bodily functional systems, when 1 or more cell types usually predominate.
Formed via histogenesis
Cell epithelium
What are the 3 primary germ layers (examples)?
Ectoderm (nervous tissue), mesoderm (muscle), endoderm (epithelium)
What are the 4 tissue types?
Epithelia: closely packed cells that line organ surface, derived form 1/3 germ layers
Connective tissue: cells from mesoderm which produce extracellular fibre matrix
Muscular tissue: mesoderm cells with filaments and of contractile proteins in cytoplasm
Nervous tissue: from neuroectoderm, cells with neurites that conduct impulses upon stimulation
What proteins allow endocytosis?
Related pathologies?
Fusogenic proteins
Anaemia, lysosomal storage disorders, Zellweger’s syndrome
The protein synthesis pathway?
Related pathologies to exocytosis?
Recognition of peptide signal sequence Peptide orientated by docking protein Translation and insertion of protein into endoplasmic reticulum Protein modification and processing Protein stored Exocytosis
I-cell disease, Lewy bodies, pro-insulin diabetes
Properties of lysosome and proteasome?
Lysosome = works in acidic conditions, peroxisome is type containing catalase Proteasome = digests protein with ubiquitation
Purpose of microscopes in medicine?
To distinguish between normal and abnormal tissue
What are the different types of stain?
H and E: Haematoxylin - stains components purple / blue
Eosin - stains basic components pink
Periodic acid Schiff: stains aldehydes, from oxidised sugars, bright pink / purple
Trichome: shows different components, such as muscle
Weigert’s elastin: stains elastic
What is the size of most cells, RBCs and mitochondria?
7-20 micrometers
- 2 micrometers
- 0 X 0.2 micrometers
What are chromosomes, chromatin and nucleosomes?
Chromosomes = condensed chromatin Chromatin = DNA and RNA proteins combined ( proteins are both acidic and basic (histones)) Nucleosomes = 2 DNA double helix wrapped around 8 histones
What is the difference between heterochromatin and euchromatin?
Hetero = + condensed, is near nuclear envelope, represents SWITCHED OFF genes Eu = - condensed, is centrally located, represents SWITCHED ON genes
Properties of histones?
- Rich in basic amino acids
- Core histones = H2A, H2B, H3, H4
- Linker histones = H1, H5
- Use for DNA compacting and chromatin regulation
What are the 3 tissue groups based on cell proliferation?
- Epidermis = Continually renewing
- Liver / kidney = Conditionally renewing
- Nerve cells / cardiac cells = static / non-proliferative
What are the 5 cell cycle stages and when does DNA synthesis occur?
Prophase, prometaphase, metaphase, anaphase, telophase
S phase
What is the role of cyclins and why are they clinically important?
- Determine cell progress through cell cycle
- Coordinate cell entry into next phase
- Cyclin-dependent kinases = activated when they bind to cyclin
- Target proteins are then activated or inactivated
Clinical importance = may be anti-cancer agents as they arrest cell cycle - tumour suppressors
What are the properties of bases and what is polymerisation direction?
What is the difference between DNA and RNA structure?
What is an insertion mutation?
Aromatic, planar, hydrophobic
2’ DNA = hydrogen
2’ RNA = hydroxyl
Chemical inserted between DNA bases
What are the stages of DNA replication?
- Helicase unravels DNA
- Leading strand = 3’ end
- Lagging strand = 5’ end
- Lagging strand = ozaki fragments so 5-3’ direction
- RNA primer required for replication
What are the properties of mRNA?
What shifts start codons?
- 5’ cap added post-transcription for translation
- Has ribosome binding site
- Has start / stop codons
- 5’ and 3’ UTRs which have info for mRNA stability and translation
- Poly(A) tail and signal added post-transcription to regulate mRNA stability and translation
Mutations
What are the impacts of UTR mutation?
Causes disease as proteins can’t bind
What determines protein 3D structure and what bonds do primary proteins and cystine have?
What are the properties of peptide bonds?
What do all proteins start with?
Genes
Disulphide
Double bond characteristics, no free electron rotation, bond is planar
Methionine
What are the properties of alpha helix and beta sheets?
What are the main polypeptide forces?
Alpha = COOH and NH2 form hydrogen bonds Beta = 5-10 amino acids with hydrogen bonds - parallel and anti-parallel
Hydrophobic, electrostatic (hydrogen, Van der Waal, ionic), covalent
What are the types of protein mutations?
- Dysfunctional or absent protein
- Cut metabolic pathway
- Dysfunctional regulatory protein or receptor
- Protein aggregation
- Loss / impairment of infection defence
What are oligomers and what are the 2 types?
What are protomers?
+1 polypeptide chains
Homo-oligomer
Hetero-oligomer
Identical sub-units
What are the properties of oligomers?
- Greater size means better enzyme
- Each sub-unit has an active site
Globular = regular secondary structure
Fibrous = type of secondary structure
What are the properties of haemoglobin?
- 4 globin sub-units held by hydrogen bonds and salt bridges
- 1 haem group per sub-unit
- More O2 = looser sub-units with greater oxygen affinity = salt bridges break
- Greater O2 pressure = is cooperative as greater O2 saturation
What is glycosylation and hydroxylation?
- Attachment of carbohydrate
- Carbohydrate is minor to glycoprotein
- Carbohydrate is major to proteoglycans
- Requires vitamin C
- Proteasome destroys misfolded proteins
- Chaperones aid protein folding
What are protein misfolding disorders?
What are prion diseases?
Alzheimer’s, Huntington’s
Diseases that can be prevented by medical intervention / age associated
What is period prevalence?
What is disease incidence?
Proportion affected over a period of time
New cases in a period of time
What is risk?
What is attributable risk?
What is NNT? How do you work it out?
Probability an event will occur
Difference in risk between exposed and unexposed populations if exposure causally related to disease
Average number of patients requiring treatment to prevent 1 additional bad outcome
- 1 / reduction in risk
What is risk ratio?
What is odds ratio?
Risk in exposed / risk in unexposed
A / B (diseased / healthy in exposed category)
How do enzymes cause disease?
What are the active site functional groups?
When does enzyme specificity increase?
Enzyme under / over expression
Co-enzymes, metal ions, amino acid residues
In biosynthetic reactions
What happens during lock and key?
What prevents it?
Hydrophobic, electrostatic and hydrogen substrate interactions
Steric hindrance and charge repulsion
What happens during induced fit?
Repositioning of amino acid side chains
What is the transition state complex?
- Rate of reaction is number of molecules with Ea
- Point when bonds maximally strained
- Greater binding to enzyme than substrate
What are cofactor/ coenzyme properties?
- Prosthetic groups (metal ions) are tightly bound cofactors
- Human coenzymes are synthesised from vitamins
- Coenzymes decrease in activity in enzyme absence (enzyme provides stability and orientation)
- Activation –> transfer / oxidation –> reduction
What are isoenzymes?
What are advantages of multi-enzyme complexes?
Enzymes that catalyse same reaction with different amino acid sequence
Diffusion transit time reduced
Less interference
Where do you find serum specific enzymes?
Where do you find secreted enzymes?
Where do you find non-serum specific enzymes?
Normal location
Pancreatic lipase / salivary amylase
No role in serum, released due to cell turnover, damage or morphological changes
What happens in pre-steady state, steady state and what is V0?
Pre-steady state = product gradually builds with excess substrate
Steady state = rate of reaction and intermediate concentration slowly change
V0 = initial rate of reaction
What are the assumptions to make in Michaelis-Menten equation?
What is Km?
What does high and low substrate conc. mean?
Assume: large number of molecules, low enzyme bound substrate percentage
Michaelis constant = affinity to enzyme = substrate concentration when V0 = 1/2 Vmax
High = 0 order = rate independent of substrate concentration Low = 1st order = rate proportional to substrate concentration
What are the properties of inhibitors?
What is Ki?
- Bind to active site
- Overcome with + substrate concentration
- Increase Km
- No impact on Vmax
- Reversible = not covalently bound to enzyme (competitive, non-competitive, uncompetitive)
- Irreversible = target metal atoms at active site, not all covalent
- Non-competitive lower Vmax
- Uncompetitive only bind to enzyme-substrate complex and form ESIs
Ki = inhibitor binding dissociation constant
What are two control methods to regulate enzymes?
Substrate response
Product inhibition
What is allosteric activation / inhibition and advantages? (regulatory mechanism)
Effectors (small molecules) non-covalently bind to enzymes at allosteric site
Advantage = rapid process as effectors don’t need to resemble substrate
What is and activator and an inhibitor?
What are the two types of effector?
Activator = + enzyme activity with effector binding Inhibitor = - enzyme activity with effector binding
Homotropic effector = substrate is allosteric effector
Heterotropic effector = effector differs from substrate