Virus Structure and Function Flashcards

1
Q

What is a virus?

A

Submicroscopic, obligate intracellular parasite that is not alive. They do not grow or undergo division.

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2
Q

What is the three part strategy for survival?

A
  1. They house genome in capsid.
  2. Genome contains all information for initiation and completion of infectious cycle.
  3. Establish relationship (benign or lethal) with host.
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3
Q

Define: Classical System

A
Viruses grouped according to their shared physical properties. Such as:
Nature of genetic material (RNA and DNA)
Symmetry of capsid
Naked or Enveloped
Dimensions of capsid
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4
Q

Define: Baltimore

A

Based on central Dogma: DNA to RNA to Protein (how do they produce RNA)

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5
Q

(+) strand mRNA

A

Translatable open reading frame. Ribosome-ready.

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6
Q

First key principle of viral genome

A

Small, finite number of nucleic acid copying strategies.

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7
Q

Second key principle of viral genome

A

Function of viral genome is to make mRNA.

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8
Q

What are the seven classes of viral genome configuration?

A
  1. dsDNA
  2. ssDNA
  3. gapped circular DNA
  4. dsRNA
  5. ss(+)RNA
  6. ss(-)RNA
  7. ss(+) RNA with DNA intermediate
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9
Q

What are the three functions of virion proteins?

A
  1. Protection of the genome
  2. Delivery of the genome
  3. Mediate interactions with the host
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10
Q

Name some characteristics of virus particles.

A

Symmetrical arrangement (helical or icosahedral), non-covalent, highly conserved, and identical bonds between identical subunits.

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11
Q

Which of the following symmetrical arrangements (helical or icosahedral) infect all forms of life?

A

Helical

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12
Q

What is the icosahedral capsid symmetry pattern?

Are they covalent or noncovalent interactions?

A

2-, 3-, 5-fold symmetry

Noncovalent

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13
Q

Enveloped virus membranes are made up of lipid bilayers and glycoproteins. Which is derived from the host and which is from the virus?

A

Glycoproteins are viral and lipid bilayer is derived from the host.

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14
Q

What are three sources of lipid bilayers for viral envelopes?

A
  1. Plasma membrane
  2. Golgi Apparatus
  3. Endoplasmic Reticulum
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15
Q

Name three roles of glycoproteins found in viral envelopes.

A
  1. Entry and host range determination
  2. Assembly and egress
  3. Evasion from the vertebrate immune system
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16
Q

Define eclipse period in viral growth.

A

Period of time after virus absorption where no infectious virus is detectable inside or outside of the cell.

17
Q

Define latent period in viral growth.

A

The time it takes from the initiation of infection to the release of new infectious virus particles from the cell.

18
Q

Name the events that occur in the latent period.

A
  1. Attachment
  2. Entry and Uncoating
  3. Gene expression
  4. Genome replication
  5. Assembly and egress
19
Q

Give two examples of target receptors for viral attachment.

A
  1. Membrane proteins

2. Carbohydrates (less specific)

20
Q

True or False: Entry of a virus is energy dependent.

A

Yes! The host cell must be metabolically active.

21
Q

Define uncoating

A

Viral capsid is completely or partially removed and viral genome is exposed.

22
Q

True or False- gapped DNA can be transcribed directly without any further modification.

A

FALSE. Gaps must be filled before genes can be transcribed.

23
Q

Which enzyme transcribes viral DNA? Is it derived from host or virus?

A

RNA polymerase II and is host derived.

24
Q

What enzyme is common to all RNA viruses?

A

RNA-dependent RNA polymerase (RdRp)

25
Q

What pathway does the following genome need to take in order to be translated: (+) stranded RNA viruses

A

Can be directly translated

26
Q

What pathway does the following genome need to take in order to be translated: (-) stranded RNA viruses

A

(-) stranded RNA viruses to (+) stranded RNA viruses

27
Q

What pathway does the following genome need to take in order to be translated: dsDNA

A

(-) strand DNA to (+) stranded RNA viruses

28
Q

What pathway does the following genome need to take in order to be translated: Retroviruses [(+) stranded RNA viruses with DNA intermediate]

A

(+) stranded RNA viruses to dsDNA to incorporation into host genome to (+) stranded RNA viruses

29
Q

What enzyme is used for both production fo mRNA and the replication of RNA genomes?

A

RNA-dependent RNA polymerase (RdRp)

30
Q

What enzyme allows for the copying of single stranded RNA genome into double stranded DNA?

A

Reverse transcriptase

31
Q

Describe the two possible strategies dsDNA viruses use to replicate.

A
  1. Replication in the nucleus (dependent on cellular components)
  2. Replication in cytoplasm (independent of cellular components)
32
Q

Where does ssDNA viral replication take place?

A

Inside the host nucleus

33
Q

Does gapped DNA viruses need reverse transcriptase?

A

Yes.

34
Q

What enzyme do RNA viruses use to replicate their genome?

A

RdRp

35
Q

What are the two ways for icosahedral capsids package their genome?

A
  1. Capsid assembles around genome

2. Genome fed into capsid

36
Q

How do naked viruses usually egress?

A

Lysis

37
Q

How do enveloped viruses usually egress?

A

Budding