Virus and Fungi- Hillard Flashcards
DNA viruses
H : Herpesvirus H : Hepadnavirus - HepB A : Adenovirus - upper resp P : Papovavirus -cervical, HPV P : Parvovirus -RBCs P : Poxvirus y
Bacterial
CBC
fever
dx
CBC = high WBCs, N left shift
Fever = high (adults), low in children
Dx: culture
Viral
CBC
fever
dx
CBC = high lymphocytosis, high WBC can be seen
Fever = low (adults), high in children
Dx: serology
Sx : most have skin lesions and affect hematopoietic cells
Herpes simplex virus HSV 1 HSV2 TR how long
HSV 1: orofacial (acute gingivostomatitis)
HSV 2 : genital
TR : skin to skin
life long
HSV neonatal infection
HSV nail sx
HSV in immunocompromised
intrauterine death , TORCH
Herpetic whitlow
viral encephalitis
Varicella- Zoster Chickenpox
TR
Sx
childhood D
highly infectious (air + contact)
Rash : papules–> itchy –> crusts,scarbs (*you see all stages of rash exist together)
fever low, malaise
Varicella- Zoster Shingles (Herpes Zoster)
TR
SX
immunocompromised
virus is dormant in dorsal root ganglia, reactivated
buringing, painful lesions, dematomal distributions*
encephalitis
Epstein Barr Virus
TR mode
infects, colonizes
“kissing d” contaminated toothbrush or utensils, saliva
Directly infects B-cells
Mono
EBV SX
fever, sore throat, lymphadenopathy, hepatosleenomegaly, atypical lymphocytosis -enlarged,
you can see rash
EBV risk factor for
- B-cell lymphoma (burkitt)
2. Nasopharyngeal carcinoma
EBV DX
Heterophile Ab test (monospot, do first)
EBV Ab test
Cytomegalovirus
TR mode
SX
body fluids
- asymptomatic
- CMV mononuclease (lymphocytosis + high fever, sore throat) - like mono
- reactivates in immunocompromised = choriorentinits
Cytomegalovirus neonatal
TORCH virus, intellectual disability
CMV choriorentinitis
pain, red, progressive vision loss, blurry vision, floating black spots
CMV vs EBV
CMV has higher and longer fevers
owl’s eye seen on histology
Rosela
age
tr mode
sx
*HH6
children
saliva
high fever (3-5days) —-> rash all over body
Human Herpes Virus 8
TR mode
SX
STI, saliva
Skin red-purple nodules, plaques on body, internal organs
= Kaposi sarcoma - intermediate grade vascular tumor
HHV 8 is common in
africa, east europe, middle east, AIDS
Hepatitis that is DNA
Hep B
Hep A
TR mode
chronic hepatitis or not
Enteric (fecal oral, contaminated water food)
NO
Hep B
TR mode
chronic hepatitis or not
Parenteral - sex, blood, mom to fetus, needles
YES
Hep C
TR mode
chronic hepatitis or not
Parenteral - sex, blood, mom to fetus, needles
YES
Hep D
TR mode
chronic hepatitis or not
Parenteral - sex, blood, mom to fetus, needles ONLY WITH HEP B***
YES
Hep E
TR mode
chronic hepatitis or not
Enteric (fecal oral, contaminated water food)
NO, except YES to genotype 3
DX for HEP A,C, D, E
Ab testing
DX for Hep B how to read it - HBsAg - HBeAg - HBsAb - Anti-HBeAg - Anti-HBcAg
HEP B serology
- HBsAg = live infection (if +)
- HBeAg = high infectivity, +
- HBsAb = immunized, or resolved infection, +
- Anti-HBeAg = low infectivity, +
- Anti-HBcAg = new infection (IgM), old infection (IgG), +
Acute Hepatitis
fatigue, malaise, jaundice (painful liver, N,V)
-HEP A, E-
Fulminant viral hepatitis
severe, underlying liver disease
HEP B and HEP D
Chronic Hepatitis
asymptomatic, RUQ pain, malaise, fatigue, jaundice
- > cirrhosis
- > hepatocellular carcinoma
- HEP B, HEP C-
hepatitis on liver function test
high AST, ALT
high bilirubin
high clotting time
Adenovirus SX
upper respiratory tract illness, (can have fever) pharyngitis, cold-like sx
*DNA
Cold SX
from RNA
sore throat, rhinorrhea, cough, malaise
3 viruses causing cold
- rhinovirus
- coronavirus
- RSV
- Metapneumovirus
- parainfluenza
RSV
Respiratory Syncytial Virus
number 1 cause of pneumonia in young children = giant cell formation
Metapneumovirus
2nd cause of pneumonia in young childern, bronchitis
parainfluenza
CROUP, “ barking cough”
infection of larynx and bronchous
Papovaviridae : Human papillomavirus
common genital warts = condyloma acuminatum
can lead to cervical cancer (E6,E7 proteins—-I TSG) - epithelial dysplasia
what strains of HPV are at higher risk for cervical and oropharyngeal cancer development
16, 18, 31, 45
Papovaviridae : Polyoma virus
immunocompetent
flu like disease
Papovaviridae : Polyoma virus
immunocompromized
BK and JC strain
BK : renal transplant patients get severe problems
JC: seen on AIDS, progressive multifocal leukoencephalopathy - demylenation
BK Polyoma virus
infects GU system , hemorrhagic cystitis in bladder and nephritis
hematuria, dysuria, polyuria, low abd pain, high Cr and low kidney function
how to screen for BK Polyoma virus
see ground glass inclusions on histology
JC Polyoma virus
infects CNS, demyelination lesions, progressive multifocal leukoencephalopathy
- mental changes, speech, cognition, behavior, motor problems = staggering gait
Parovirus B19
SX
other name for it
low fever, headache, sore throat, rash on cheeks* = rash slapped cheeks Erythma infectiosum (5th's disease)
Parovirus B19 in severe cases can
kill RBCs and transient anemia (especially in SS anemia, thalassemia)
Parovirus B19 neonatal
fetal hydrops, severe anemia
histology Parovirus B19
giant erythroblasts
Poxviridae : Molluscum contagiosum
superficial skin infection all over body , “water warts”
young children, immunocompromised
Poxviridae: Smallpox
gone in humans
highly contagious, high fever + hard vesicles at same stage
Orthomyxoviridae : influenza
2 virulence facotors
TR mode
RNA
1. Hemagglutinin : binding to sialic acid receptors (UppRespTr)
2. Neuraminidase : disrups mucin barrier
air
Orthomyxoviridae : influenza SX
high fever, rhinorrhea, cough, myalgias, arthralgia
- had annual vaccine
Antigenic Drift
small mutations in Neuraminidase and Hemagglutinin
- milder disease
Antigenic Shift
trading RNA segments with another virus (usually in animals) —-> completely new Neuraminidase and Hemagglutinin
= pandemic
Paramyocoviridae : Measles
other name
steps in SX
Rubeola
- fever, cough, rhinitis, conjunctivitis
- Koplik’s spots (oral lesions)
- head —-> toe maculopapular rash
- can lead to pneumonia and encephalitis
Paramyocoviridae : Measles can persist and cause
Subacute scelrosing panencephalitis
- slowly progressing neurologic disease (forgetful, distractilibility…)
Paramyxoviridae : Measles spreads
by respiratory droplets
Rubella
other name
SX
German measles (milder type)
Mild-measles-like illness
- erythematous rash : head —-> toe (maculopapulary)
- flu-like, fever, lymphadenopathy
Rubella neonatal
in a TORCH and causes congenial HEART, EYE, EARS, CNS problems
Paramyxoviridae : Mumps
SX steps
fever
infects parotid gland (parotitis) + testes (orchitis)
Paramyxoviridae : Mumps
childhood vaccination mumps, measles, rubella (MMR)
Coronavirus
TR mode
SX
air
common cold
coronavirus
SARS -CoV and COVID-19
bar reservoir in china
atypical pneumonia
- can get severe respiratory sx, prothrombic states, encephalitis
Coxsackie virus : Coxsackie A
- Herpangina : bilateral herpes-like vesicular eruption in back of throat
- Hand, foot, and mouth disease : pediatric illness, mild fever with red vesicular lesions on had, feet, in and around mouth : children
Coxsackie A vs herpes
bilateral and posterior , and throat lesions in coxsackie A
Coxsackie B
boards
- Pleurodynia : resp infection, fever, CP i on inspiration
2. Myocarditis, Pericarditis : heart inflammation , arrhythmias, hear failure
Hantavirus
colonize
area
SX
rodent reservoir
SW USA
flu-like illness : high fever, myalgia, cough, N, V)
Hantavirus can become
Hantavirus pulmonary syndrome : fluid leaks out from pulmonary capillaries, shock, death
Diarrhea viruses : 2
Norovirus (Norwalk virus)
Rotovirus
Norovirus (norwalk virus)
N,V, Watery D, can have fever
= institutional settings*
=cruises
Rotovirus
N,V, Watery D, can have fever
= institutional settings*
can cause infant mortality
Rhabdoviridae: Rabies
shape of rna
TR mode
bullet shaped RNA
bite (saliva) from warm blooded animals
—-> up the nerve axon —-> CNS
Rhabdoviridae: Rabies
SX steps
- incubation weeks to years
- fever, headache, sore throat
- hydrophobia (swallowing causes pharyngeal spasms = scared of drinking), agitation, aggressive, hallucination behavior,
- paralysis, coma, death
Rhabdoviridae: Rabies once sx start
there is no reverse , encephalopathy, death
Rhabdoviridae: Rabies prevention and tx if bitten
vaccine if high risk
many vaccines of immunoglobulin IgG is given
Flaviviridae virus
colonize
TR mode
febrile mosquito- born illness, in warm tropical
Flaviviridae virus : yellow fever
SX
fever, headache, N,V
*Hepatitis + jaundice
(60% mortality if severe)
Flaviviridae virus : Dengue fever
SX
- “break-bone fever” - severe backache, joint pain, transient macular rash
can cause hemorrhage (skin and mucosal bleeding)
Flaviviridae virus : Zika virus
SX
fever, rash, joint pain, illness resolves
neonatal —-> microcephaly
Flaviviridae virus : West Nile Virus
SX
TR mode
fever, headache, can have rash
severe: meningitis, encephalitis, paralysis
mosquito –> CNS
Flaviviridae virus : togaviridae
SX
TR mode
encephalitis (horses + humans)
mosquitos TR from birds
- western equine encephalitis
- eastern equine encephalitis
Polio virus
boards
eradicated for the most part mild fever repeated fro 1-3 weeks aseptic meningitis flaccid asymmetric paralysis virus ----> anterior motor neurons)
HIV function
- RNA retrovirus binds to and infects + kills CD4+ cells
- protease : makes more copies
- Gp120 : binds to t-cells
- Gp41 : fusion to T-cell membrane
HIV screening
P24 capsid = Ag test for HIV which is surrounded by a p24 capsid
HIV : acute
1mo -3mo after exposure
mononucleosis- like (mono): fever, fatigue, myalgia, lyphadenopathy, pharyngitis
HIV : latency
about 7-8 years
lymphadenopathy increased, fever, weight loss, night sweats
- can cause CNS problems
- opportunistic infections
CD 4+ normal and abnormal
normal : 1000cells/uL
susceptible to infection : 400cells/uL
AIDS : 200cells/uL
what are some clinical findings you can see in AIDS patients
- oral thrush by candida (pseudomembranous plaque, milk curd looking) tongue into esophagus, red under
- Cryptococcus neoformans : organisms in CSF
- MRI : toxoplasmosis lesions - handling cat little
3 diseases when CD 4+ is below 200cells/uL
- Candida
- Cryptococcus neoformans
- Toxoplasmosis
HIV can cuase what cancers
- B-cell Lymphomas (from EBV)
- Kaposi sarcoma (fromHHV8)
- Cervical carcinoma (from HPV)
HIV DX
Ab/Ag assay fro HIV Abs or p24 Ag
PCR
HIV-1 most common type
Fungal Hyphae
filamentous multicellular structure , mold
Yeast
unicellular budding, pseudohyphae
spores
reproductive single cell hyphae
thermally dimorphic fungi
25C, 77F
hyphal form
thermally dimorphic fungi
37C, 98.6F
yeast form
superficial fungal infections
- pityriasis versicolor
- tinea nigra
- dematophytes
subcutaneous fungal infection
- Sporothrix schenckii - ulcerative nodules
2. chromoblastomyocosis - cauliflower wart-like
Pityriasis versicolor (tinea versicolor)
hypopigmented or hyperpigmented skin macules
- Malassezia species (spaghetti and meatballs)
Tinea nigra
dark brown/ black spots (palms, soles)
-Hortaea (Exophaiala) werneckii
Dermatophytes 3 types
- Microsporum
- Trichophyton
- Epidermophyton
Dermatophytes SX
pruritic, scaly, circular rash, erythematous ring
Tinea corporis
main body
ring worm
Tinea cruris
affect groin scrotum
jock itch
Tinea pedis
feet, toes
athletes foot
tinea capitits
scalp mostly in children
Tinea unguinium (onchomycosis)
nails
Tinea barbae
hair
how to DX fungus
KOH scrape
wood lamp
Sporothrix schenchii
colonize
TR
SX
soli and plant thorns and woods
gardening
hands and feet, into lymph —-> subcutaneous ulcerative nodule
Chromoblastomycosis
TR mode
colonizing
tropical, subtropical, soil, rotting wood
Sporothix, traumatic implantation (thorns)
Chromoblastomycosis
SX
violet wartlike lesion : cauliflower wart
- months to years later-
- sclerotic bodies on histology (circular, ovid, brown, anucleated structures)-
sclerotic bodies function
in Chromoblastomycosis
resistant to immune clearing = elicit giant cell reaction
Candida albicans 3 types SX
- Oral thrust = immunocompromised, esophagitis
- Vaginalis = itching, discharge, menses, preg, ab, contraceptives can cause it
- Rash = Diaper rash, under skin folds, obesity and diabetes
Candida albicans is from what
pseudohyphae (budding cells often in spore formation)
oral Candida albicans is called
oral thrust
Dimorphic fungi characteristics
- primary lung infection from breathing in spores
- high eosinophilia
- granulomas *
- spread hematogenously (blood : CNS, bone, skin)
- DX by biopsy, cytology cuture
- thermally change
3 Dimorphic fungi
and how to dx them
- Histoplasma - urine Ag test
- Blastomyces - urine Ag test
- Coccidioides - serology
Bronchoalveolar lavage
get material in lung for infections,
tube down airway instilled with saline and traps saline, silver stain for fungal infection detection
can also see cancer
viewing oral thrust by
EGD : esophagogastroduodenoscopy
Histoplasma capsulatum
area
colonize
mississippi, Missouri, Ohio river valley, Midwest
CAVES : bat droppings
birds, chickens (farm)
Histoplasma capsulatum SX
asymptomatic in immunocompetent
lung lesions –> cacification
pneumonia (mediastinal lymphadenopathy)-rare
*can look like TB
Blastomyces dermatitidis
area
colonize
Mississippi river valley, Great lakes
soil, rotten wood
Blastomyces dermatitidis SX
- acute or chronic pneumonia (cough, low grade fever, sob)
- multisystem disease more common to happen then histoplasma
- skin cutaneous plaques
Blastomyces dermatitidis in histology
broad based double budding spores
Coccidioides immitis
area
colonize
SW USA, valleys, dust, earthquakes
Desert areas , inhale spores and inside body –> large spherules
Coccidioides immitis SX
self-limited acute pneumonia = “valley fever”
CP, fever, cough
- can cause meningitis
Cryptococcus Neoformans
colonize
TR
Pigeon droppings
large polysaccharide capsule yeast
Cryptococcus Neoformans SX
asymptomatic in immunocompetent immunocompromised : - Meningoencenphalitis from lung to blood to brain - can cause focal pneumonitits * common in AIDS or HIV
Cryptococcus Neoformans DX
Bronchoalveolar lavage or lumbar puncture
India Ink : clear ring around capsule
Cryptococcus Gattii
area
colonize
australis, papa new guinea, NW US occasionally
soil around fir or eucalyptus
Cryptococcus Gattii SX
immunocompetent have some SX
immunocompromised :
- SEVERE Meningoencenphalitis from lung to blood to brain
- SEVERE pulmonary problems
Aspergillus
colonize
grains, peanuts, corn, rice
Aspergillus SX
- Allergic Bronchopulmonary Aspergillosis
- asthma like bronchospasm (IgE) - Aspergilloma : Lung cavitation fills with asoergillus = Fungus ball
- Aflatoxins made : chronic liver injury, heptacellular carcinoma
Allergic Bronchopulmonary Aspergillosis
- asthma like bronchospasm (IgE)
low grade fever, wheezing, malaise, cough up mucous (pneumonia)
Aspergilloma
Lung cavitation fills with asoergillus = Fungus ball
like TB, necrotizing infection
Aflatoxins
made in foods –> chronic liver injury, heptacellular carcinoma
Aspergillus classic triad can be seen in some
- fever
- pleuritic CP
- hemoptysis
- immunocompromised
Mucormycosis (zygomycosis)
colonize and who
soil, decaying material
- low N= immunocompromised/ organ transplant,
- high glucose + acidic = DM
- iron overload = Deferoxamine (has Fe)
Mucormycosis (zygomycosis) 2 types
- Rhinocerebral
2. Pulmonary
Mucormycosis (zygomycosis) : Rhinocerebral Mucormycosis
- acute sinusitis (sinus pain), nasal congestion + discharge
- after days : palate, orbit, brain spread
- fatal
Mucormycosis (zygomycosis) : Pulmonary Mucormycosis
nodular masses in lungs, appear like aspergillus
fever
hemoptysis
Pneumocystis jiroveci (carinii)
colonized
who
most people are exposed, ubiquitous, around us
AIDS, immunocompromised
Pneumocystis jiroveci (carinii) SX
low grade fever, SOB, nonproductive cough, hypoxia
Pneumocystis jiroveci (carinii) histology
crushed ping pong balls
Mucormycosis (zygomycosis) histology
broad non-septated hyphae
Aspergillus histology
many septal hyphae, acute angle branching
2 fungus like bacteria
- Actinomyces
2. Nocardia asteroides
Actinomyces
gram
colonizes
gram +
normal oral flora, upper resp, genital tract, GI
Actinomyces SX
eroding abscess when mucus membrane is disrupted, cervicofacial (mouth), ABD (GI), thoracic (lung) disease
Actinomyces histology
sulfur granule formation (yellow glossy) = actinomyces mixed with inflammatory debris
- beaded thread-like
Nocardia asteroides
gram
TR
who/ colonize
gram +
air
opportunistic for immunocompromised
Nocardia asteroides type of bacteria
acid fast bateria (mycolic acid)
- similar to TB
Nocardia asteroides SX
pneumonia, lung abscess, cavitation
disseminates
fast acid dieseases
- Nocardia asteroides
- TB, lepre, MAC
- Rhodococcus Equi (Corynebacterium Equi)
- Cryptosporidium Parvum