Test 2 study guide Flashcards

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1
Q

Characterize the features common to viruses

A
  • small
  • infectious
  • non-living
  • consists of protein and nucleic acid
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2
Q

Describe the structures of viruses and the function of each of the parts

A
  • composed of nucleic acid, proteins, and sometimes, a membranous envelope
  • capsid: protective protein coat made of capsomeres around the nucleic acid
  • other proteins besides the capsid; like glycoproteins or viral enzymes
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3
Q

Describe bacteriophages strutures and their functions

A
  • are viruses that infect bacteria

* bacteriopages have a complex capsid consisting of an icosahedral head and a tail apparatus

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4
Q

Compare and contrast the two types of bacteriophage reproductive cycles

A
  • lytic cycle: phage reproduces killing the host cells; lytic bacteriophages attach to the cell wall of a bacterial cell (attachment/absorption); inject viral DNA into the cell (penetration); phage takes over the cell’s metabolic machinery, degrades the cell’s DNA, and makes copies of its own genome and proteins. (replication); virus components assemble into new phage particles (assembly); the viruses lyse, or burst open the cell, resulting in death to the bacterial host (release)
  • lysogenic cycle: phage reproduces without killing the host; phage attaches to the cell wall of a bacterial cell (attachment); virus genome enters the cell (penetration); phage circularized DNA will become inserted into a host cell chromosome and referred to a prophage (integration); DNA essentially “hidden” in the host cell’s DNA; prophage is replicated along with the bacterial host chromosome during cell (replication); A switch from lysogenic to a lytic cycle can be triggered; usually occurs as a result of an environmental factor, such as radiation or certain chemicals; the prophage is released from the host chromosome and returns to an active replication cycle that will lyse the host cell
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5
Q

Understand how viruses infect a host and what determines their ability to infect a host

A
  • They have to fit the proteins (specific)

* “host range”

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6
Q

Contrast viroids and prions and the host range for each. Which targets plants? Animals?

A
  • viroids: a plant pathogen consisting of molecule of naked, circular RNA
  • prions: infectious agent consisting of a misfolded protein of a normal cellular protein; slow-acting, virtually indestructible infectious proteins that cause brain diseases in mammals by slowly converting correctly folded versions of the protein to more prions
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7
Q

Understand retrovirues and their reproductive cycle

A
  • retroviruses us reverse transcriptase to copy their RNA genome into DNA
  • reverse transcriptase: an enzyme encoded by retroviruses that uses RNA as a template for DNA synthesis
  • replicative cycle: the viral DNA that is integrated into the host genome is called a provirus; the host’s RNA polymerase transcribes the proviral DNA into RNA molecules; the RNA molecules function both as mRNA for synthesis of viral proteins and as genomes for new virus particles released from the cell
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8
Q

Understand how humans prevent and treat viruses

A
  • good hygiene: avoid contact with contaminated food, water, fecal material or body fluids; wash hands frequently
  • vaccines: stimulate natural defenses in the body; contain a component of or a weakened or killed virus particles; developed for many once common illnesses such as smallpox, polio, mumps, chicken pox; not available for all viruses
  • anti-viral drugs (but not antibiotics): available for some viruses; inhibit some virus development and/or relieve symptoms.
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9
Q

Describe how new viruses emerge

A
  • through mutation and evolution
  • by spreading from one species to a new host species
  • by spreading from an isolated location to more widespread locations
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10
Q

Characterize the features common to prokaryotes

A
  • single-celled
  • most have distinctive cell walls
  • lack membrane-bound organelles
  • both anaerobic and aerobic
  • genetic material is single circular bacterial chromosome and sometimes plasmids
  • cell division is mostly asexual reproduction via binary fission also budding
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11
Q

Compare and contrast features of prokaryotes and eukaryotes

A
  • similar - they are both living; have DNA; plasma membrane; cytoplasm, and ribosomes
  • prokaryotes - nucleoid region; very small; not very complex; only single-celled;
  • eukaryotes - nucleus and other membrane bound organelles; large cells; complex; most multicelled but also some single-celled;linear chromosmes
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12
Q

Describe three types of shapes that are used to classify bacteria

A
  • bacilli (singular - bacillus): rod-shaped; usually solitary but in some forms the rods are arranged in chains
  • cocci (singular - coccus): shperical shaped; occur singly, in pairs, in chains of many cells, and in clusters resembling bunches of grapes
  • spiral (singular - spirillum): spirilla - comma shaped and loose coild; spirochetes - corkscrew shaped
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13
Q

Explain how and where bacteria are able to carry out the functions of chlorophasts and mitochondira, which they lack

A
  • the plasma membrane
  • infoldings of plasma membrane functions in cellular respiration in some aerobic prokaryotes
  • photosynthetic prokaryotes called cyanobacteria have thlakoid membranes much like those in choloroplast
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14
Q

Describe the structures and their functions of a typical bacteria cell

A
  • DNA loose in the cytoplasm, located in the nucleoid region. may also have small rings of DNA called plasmids
  • ribosomes in the cytoplasm
  • plasma membrane
  • cell wall
  • outer surface coating called a glycocalyx (capsule or slime layer)
  • some have appendages (pili, fimbriae, endospore, flagella)
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15
Q

Compare and contrast the cell walls of Archaea and Eubacteria

A
  • gives them shape; protects them; prevents lyse
  • eubacteria has peptidoglycan cell wall
  • archaeabacteria cell wall is not made of peptidoglycan
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16
Q

Explain how gram staining is used to classify bacteria as gram positive or gram negative

A
  • gram positive is thick and simple and stains purple and is made of mostly peptidoglycan
  • gram negative is thin and more complex stains pink and have less peptidoglycan
17
Q

Understand how rapid reproduction, mutation, and genetic recombination promote genetic diversity in prokaryotes

A
  • binary fission which happens in short generation time of 1-3 hours
  • mutation doesn’t happen often however high •generation time is so high allows for to accumulate rapidly
  • genetic recombination - horizontal gene transfer; transformation (picking up dead cell DNA); transduction; conjugation
18
Q

Describe the ways in which bacteria move

A
  • flagella

* taxis:chemotaxis (chemical stimuli; phototaxis (light stimuli)

19
Q

Contrast bacterial chromosomes with plasmids

A
  • Plasmids has DNA and just a few genes and is not needed for life
  • chromosomes is needed for normal metabolic processes
20
Q

Distinguish between transduction, transfromation, and conjugation

A
  • transformation is a genotype and phenotype due to assimilation of external DNA by a cell (forgein DNA)
  • transduction the movement of genes between bacteria by bacteriophages
  • conjugation hollow bridge between two bacterial cells, genetic material moves from one cell to the other.
21
Q

Identify the structure that some bacteria form during harsh environmental conditions

A

•Endospores - thick internal wall that encloses the DNA and a portion of the cytoplasm

22
Q

Discuss the different modes of nutrition bacteria use and know the primary one that most bacteria use

A
  • majority are heterotrophs - require an organic nutrient as a carbon source to make organic structures
  • phototrophs - obtain energy from light
  • chemotrophs - obtain energy from chemicals
  • autotrophs - require CO2 (in some form) as a carbon source
23
Q

Discuss how prokaryotes metabolism varies with oxygen

A
  • obligate aerobes - require oxygen for cellular respiration
  • obligate anaerobes - are poisoned by oxygen and use fermentation or anaerobic repiration
  • facultative anaerobes - can survive with or without oxygen
24
Q

Distinguish between the three groups of archaea: thermophiles, methanogens, and halophiles.

A
  • thermophile - thrive in very hot
  • halophiles - thrive in very salty
  • methanogens - live in swamps, marches, km under ice and produce methane as a waste product (greenhouse gas
25
Q

Distinguish between commensalism, mutualism, and papasitism

A
  • commensalism - one organism benefits while neither harming nor helping the other in any significant way
  • mutualism - both symbiotic organisms benefit
  • parasitism - an organism called a parasite harms but doesn’t kill the host initially
26
Q

Explain why bacteria and archaea are in their own domains.

A
  • they are slightly different
  • archaea have some similarities to eukaryotic cells (ie rRNA sequences, RNA polymerase); not sensitiy to antibiotics
  • bacteria has unique rRNA sequences; RNA polymerase is small and simple; sensitive to antibiotice and has a peptidoglycan cell wall
27
Q

Discuss the importance of bacteria. Understand their role with fixing nitrogen. E.g. Anabaena

A
  • decomposers
  • symbiotic relationships like in the gut
  • important in fixing nitrogen into organisms for use.
28
Q

Discuss how humans try to prevent, remove, control and treat bacterial diseases and substances contaminated by bacteria

A
  • physical removal - washing hands and surface
  • kill bacteria - disinfectants; antibiotics; sterilization by heat
  • food processing - boiling, steaming, frying, cold temperatures
  • prevention - vaccine
  • treatment - antibiotics
29
Q

Characterize the features common to the members of kingdom protista

A
  • small, usually unicellular
  • micro and macroscopic
  • all like moist habitats
  • nucleus is distinct with single or multiple nucleated cells; have organelles but no tissues or organs
  • locomotion via flagella, cilia, pseudopodia
  • resistant stages (cyst/test/shells, spores)
  • mode of life (free living, mutualistic, commensatlistic, parasitic)
  • nutrition (chemoheterotroph, photoautotrophs)
  • reproduction (asexual or sexual reproduction by meiosis and the union of gametes)
  • osmoregulation via contractile vacuoles
30
Q

Discuss in general terms the diversity inherent in the protist kingdom, including modes of nutrition, body forms, motility, and reproduction

A
  • nutrition (chemoheterotroph, photoautotrophs)
  • reproduction (asexual or sexual reproduction by meiosis and the union of gametes)
  • locomotion via flagella, cilia, pseudopodia
  • resistant stages (cyst/test/shells, spores)
31
Q

Know the five supergroups and briefly describe and compare the representative species for the five supergroups

A
  • Excavata
  • Chromalveolata
  • Archaeaplastida
  • Rhizaria
  • Unikonta
32
Q

Briefly describe and compare the phyla within each supergroup. Understand characteristics that are unique to each phyla

A
  • Excavata - Euglenophyta (unicellular, two flagellas located on their front, excavated feeding groove on one)
  • Chromalveolata - Pyrrophyta/Dinophyta (unicellular, motile, and marine with two flagella(spiral flagella), cellulose plates, mixotrophs, asexual); Ciliophora (cilia, free living, motile with some sessile, mulitinucleated, asexual and sexual via conjugation); Bacillariophyta (glassy crystalline appearance cell walls contain silica, important phytoplankton, asexual); Brown Algae (almost all marine, multicellular and photosynthetic, flagellated sexual gamets and asexual zoospores)
  • Rhizaria - Foraminifera (calcium carbonate test with pores, heterotrophic, reproduction is by binary fission, when die collect at bottom to form chalk); Radiolaria (single celled with glassy sicla skeletons, pores allow cytoplasm to protrude through forming axopods, marine plankton which are heterotrophic)
  • Archaeaplastida - Rhodophyta (all marine, very simple filaments or complex morphology, cell wall contains cellulose, chlorophyll and accessory pigments called phycobilins, reproduction asexual and sexual);
  • Unikonta -
33
Q

Indentify the protist that cause backpackers’ diarrhea, African sleeping sickness, used as an indicator for organic pollution, is responsible for blight of potatoes, red tides, viginal STD, ect.

A
  • backpackers’ diarrhea - Excavata - Euglenaphyta - Giardia intestinalis
  • African sleeping sickness - Excavata - Euglenaphyata - Trypanosoma
  • indicator for organic pollution - Excavata - Euglenaphyat - Euglenids
  • blight of potatoes - Chromalveolata - Brown Algae - water mold (Phytofora infestons)
  • red tides - Chromalveolata - Pyrrophyta/Dinophyta - Dinoflagellates
  • viginal STD - Excavata - Euglenaphyta - Trichomonas vaginalis
34
Q

Discuss the protists and bacteria that collectively compose phytoplankton and their importance

A
  • communities of mostly microscopic organisms (bacteria, some algae, diatoms, & dinoflagellates) that drift in currents near the waters surface
  • decomposes and creates oxygen
35
Q

Discuss the protist that causes malaria and the vector it uses to infect its host

A
  • Plasmodium - parasite that causes malaria
  • Parasites spread through tiny infectious cells called sporozoites
  • Mosquito harboring sporozoites bites human transmitting the parasite
36
Q

Describe what is unique about the reproduction of red algae

A

•Sexual reproduction involves alternation of generation but there are NO flagellated cells.

37
Q

Be able to explain the life cycle of the brown algae Laminaria. See lecture notes and PowerPoint.

A

•Reproduction is varied with flagellated sexual gametes and asexual zoospores. Alternation of generationis exhibited. Part of life as a haploid, part as diploid and both stages are multicellular.