SNS - Biology Flashcards
Kin Selection
Altruistic behaviour is selected for evolutionarily as it increases the fitness of closely related individuals
Ethology
Behavioual science - explores the way in which animals respond to their environment - how and why an animal reacts to a stimulas in a certain way and why a particular behaviour was evolutionarily favoured
Fixed Action Potentials, FAPs
Inherited behaviours, neither learned nor changeable but hard-wired into the neural circuitry of the organism. Occurs when an environmental stimulus consistently triggers a programmed response sequence. eg an insect building a nest, a hatchling opening its mouth for food
Imprinting
A type of learning that combines inherited and learned behaviours. Happens during a critical period in an animal’s development when an innatr behaviour is customised to environmental information
Habituation
Simple form of learning in which an animal stops reacting to unimportant stimuli over a period of time
Associative learning
Involves the association of one thing in the environment with another. The two types are classical and operant conditioning
Classical conditioning
Whereby an animal associated a neutral stimulus with another non-neutral stimulus. eg bell and food
Operant conditioning
WHereby an animal learns to associate a behaviour with a reward or punishment
Ecosystem
Comprises all living and non-living parts of a community including animals, plants, fungi, bacteria, rock, air, water sources etc
Primary producers
Organisms are classed as either producers or consumers. Primary producers - plants - are self-feeding (autotrophs) capturing energy from inorganic nutrients. Represent the first trophic level in the food web
Primary consumers
Consumers are heterotrophs - cannot make their own food. They obtain it by eating producers or other heterotrophs. Primary consumers are herbivores and directly eat the primary producers. Represent the second trophic level in the food web
Secondary consumers
carnivores - eat primary consumers
Tertiary consumers
carnivores - eat secondary consumers
Decomposers
Or Detritivores. Mostly fungi and bacteria. Occupy the trophic level that return the energy to the producers when organisms die,
10% Rule
States that only 10% of energy transfers from a lower trophic level to a higher one
Nitrogen cycle
x
Carbon cycle
x
Interspecific interactions
Sets of relationships that can occur between different species in a community. Can have a positive or negative effect on each of the species involved 1. competition 2. predation-prey oscillations 3. symbiosis
Interspecific interactions Competition
When a specific resource is scarce and needed by two different species, these compete. Can lead to conpetitive exclusion with local extinction of one of the species or niche differentiation with one of the species redefining its ecological niche so that they are no longer in competition Competition is a negative interaction for both species involved
Interspecific interactions Predation-Prey Oscillations
Negative for one species (prey), positive for the other (predator)
Interspecific interactions Symbiosis
Close association between two species in a community. Parasitism is one relationship in which one species (the parasite) benefits and the other (the host) is harmed. In mutualism both organisms benefit from the interaction Commensalism is a relationship in which one organism benefits but the other is neither helped nor harmed
Niche
The sum of all resources that a species uses in a community is called its niche. Refers to an organisms habitat. Is also defined by the conditions under which the organism can live and the way in which it utilises the resources in its environment. Temp range, moisture levels and food preferances are examples of factors that shape an organism’s niche
Competetive exclusion principle
States that no two species can occupy the same niche in the same place and time. For this reason organisms are likely to exploit different resources and develop varying niches
Succession
Refers to the gradual process by which the species composition within an area can change as one community gives way to another
Communities
An assembly of different species, eg different types of coral, fish, arthropods etc in a coral reef
Population
A group of orgainisms from the same species that lives in the same niche. Highly dynamic and can fluctuate dramatically in number
Population ecology
the study of population dynamics
Carrying capacity, K
The limit to the number of individuals of a species. Based on the concept that a niche has a finite amount of resources to support a population
K-selected species
Those that have few offspring and invest heavily in parental care
r-selected species
Those that have a large number of offspring and provide little parental investment
The founder effect
Extreme example of genetic drift. Whereby a small number of individuals branch off from the main population and colonise a new habitat. When a population becomes reproductively isolated, the ‘colonising group’ becomes the ‘founder’ of a new species
Allopatric speciation
Arises from the geographical separation of population preventing gene flow and resulting in natural selection operating differently on the two populations
Parapatric Speciation
Occurs when a small part of a larger population branches off in the absence of geographical barriers
Sympatric Speciation
Whena new species originates within a larger population, usually resulting from a genetic mutation. Occurs frequently in plants with chromosome doubling
Genetic drift
Mutations can by chance, rapidly change the genetic composition of a small population
Hardy-Weinberg Law
A hypothetical model that examines circumstances that cause evolution. If random sexual selection is the only factor affecting allele frequencies, no evolution would occur - a situation known as the Hardy-Weinberg equilibrium. If, however, there are mutations or unequal reproductive successes among individuals within a population, allele frequencies will not match those for the Hardy-Weinberg equilibrium and evolution will occur
Evolution
CHanges in the allele frequency within a population
The Hardy-Weinberg Equation
p^2 + 2pq + q^2 = 1 Where p = the frequency of the dominant allele, and q = is the frequency of the recessive allele in a given population
Analogous Evolution
Or convergent evolution. Independent evolution of similar structures in species which do not have similar lineages
Homologous Evolution
Or divergent evolution. Gives rise to similar structures in species from a common ancestral lineage
Cladistics
The study of the groupings of organisms. An ancestor and all of its descendents are grouped into a clade
Phylograms vs Cladograms
Length of branches in a phylogram indicate the number of genetic changes that have occured since a common evolutionary ancestor. Therefore give infomation on evolution. Cladograms give information on groupings of organisms
Evolution Natural Selection
Tends to select for characteristics of an organism which make it better suited to its environment
Evolution
The process by which the genetic makeup of populations change over time
Evolution Fitness
Determined by the ability to produce viable offspring
Evolution Adaptation
A change over time in the genetic makeup of a population that increases its fitness
DNA Replication Direction of Replication
The two DNA strands are antiparallel: one 5’ to 3’ and the other 3’ to 5’. During replication bases are added to the 3’ end of the template, making the overall direction fo replication 5’ to 3’
DNA Replication Leading Strand
Because strands are antiparallel and only one portion of the DNA is unwound at a time, only one strand - the leading stand- will alllow for the 5’ to 3’ directional addition
DNA Replication Okazaki Fragments
Small fragment of DNA transcribed from the lagging strand in the 5’ to 3’ direction and joined together
DNA Transcription
Process by which the portion of DNA encoding a specific protein is base paired with RNA nucleotides creating a complementary strand of RNA called mRNA
DNA Translation Sense strand
Strand of DNA that permits the mRNA strand to grow in a 5’ to 3’ direction
DNA Translation Anti-sense strand
Strand of DNA that isn’t used as a template
DNA Translation Complementary mRNA
Base pair inverted form of the original DNA sense strand containing U in place of T
DNA Replication Steps
- DNA helicase unwinds the two DNA strands 2. Single stranded binding protein helps stabilise the unwound DNA strands 3. A small piece of RNA acts as a primer, which is necessary to begin replication process. Only one primer is necessary for replication of the leading strand while multiple primers are needed for replication of the lagging strand 4. DNA polymerase III adds nucleotides to the 3’ end of the primer following the base pairing of nucleotides. Also corrects base pairing errors 5. DNA polymerase replaces the RNA primer with DNA nucleotides 6. DNA ligase joins the Okazaki fragments of the lagging strand as well as the DNA replacing the RNA primer in the leading strand 7. Following replication, each new helix is composed of one parent strand and one newly replicated strand
DNA Transcription Phases
- Initiation 2. Elongation 3. Termination
DNA Transcription Initiation
Begins when the promoter protein binds to the DNA at the starting point of transcription, unwinding the DNA
DNA Transcription Elongation
Occurs when RNA polymerase adds RNA nucleotides, again following the base pairing rule
DNA Transcription Termination Eukaryotes
Different in prokaryotes and eukaryotes In eukaryotes a specific sequence of nucleotides indicates the end of transcription is near. RNA polymerase continues to add 50-250 base pairs before cutting the mRNA free. The mRNA then receives a cap of modifies guanine and a tial of 50-250 adenine nucleotides. Exons, the coding portions, are spliced tgether while the non-coding introns are excised
DNA Transcription Post-transcriptional modification
The newly-transcribed mRNA then receives a cap of modifies guanine and a tial of 50-250 adenine nucleotides. Exons, the coding portions, are spliced together while the non-coding introns are excised. The modified mRNA exits the nucleus and enters the cytoplasm where it will be translated into a protein
RNA Translation
The bases on a strand of mRNA code for different amino acids which assemble to form proteins during the process of translation. Different codons - combinations of three base pairs - correspond to each of the 20 amino acids. tRNA is responsible for decoding the message and adding the appropriate amino acids. Ends when a tRNA reaces a stop codon on the mRNA such as UGA which doesn’t code for an amino acid
RNA Translation Transfer RNA
tRNA is responsible for decoding the message and adding the appropriate amino acids. Each has an anticodon sequence that is complementry to the mRNA. The other end has a specific amino acid attached to it
RNA Translation Ribosomes
Moves along the mRNA strand. Responsible for holding the tRNA in place while the peptide bond between amino acid is taking place. Have three distinct regions: E site, P site and A site. Proteins that are bound for extracellular release, such as neurotransmitters are translated on ribosomes in the rough ER. Proteins destined to stay within the cell are translated in free ribosomes
RNA Translation Ribosomes E site
exit site for the tRNA that has just finished adding its amino acid
RNA Translation Ribosomes P site
For the tRNA that is actively creating a peptide bond int eh growing polypeptide chain
RNA Translation Ribosomes A site
For tRNA that is bringing the amino acid to be added after that occupying the P site
Gene Structure Nucleotide
Composeed of one molecule of the sugar deoxyribose, one phosphate group and one of four nitrogenous bases: adenine, cytosine, guanine or thymine
Gene Structure DNA Structure
Double helix witha sugar-phosphate backbone and rings of paired nucleotide bases. Two hydrogen bonds link A and T while three join G and C
Gene Structure RNA Structure
Can be single or double stranded. Different to DNA in its composition in that the sugar ribose replaces deoxyribose and the nitrogenous base Uracil replaced thymine
Independent Assortment
During metaphase I of meiosis when chromosomes line up at the metaphase plate, there is no force that governs maternal chromosomes to orient themselves towards one pole and paternal chromosomes towards the other. For each homolougous pair, there is a 50% chance that the maternal chromosome will situate itself at a particular pole. Chromosome1 has no effect on the positioning of chromosome 7 - they are independent. Without considering crossing-over, the number of combinations of a daughter cell formed by meiosis of a parent cell with two homologous pairs of chromosomes is four
Linkage
Means genes for two given traits are linked on the same chromosome and will not follow Mendalian laws for independent assortment. Genes that are close together on the same chromosome are more likely to be inherited together. Genes that are farther apart are more likely to be separated by crossing=over and exchange
Recombination Frequency
The rate at which two genes become unlinked. By establishing this, it is possible to create genetic maps which show the locations of the various alleles on the chromosome
Sex-linked genes
Located on sex chromosomes. The X chromosome is much larger than the Y and carries these genes. As females have two X chromosomes, the dominant sex-linked allele is expressed and the recessive is not. In males any allele on the one X chromosome is expressed
Sex-linked genes -Inheritance
A woman can be heterozygous for a recessive sex-linked disease and act as a carrier. She is not affected but there i a 50% probability that her sons will suffer from the disease. The male X chromosome is passed onlyto female offspring. Therefore an affected male can pass the condition to female but not male offspring. If a daughter is homozygous for the recessive allele she will suffer from the condition. If she is heterozygous, she will act as a carrier
Sex-linked genes -Pedigrees
Depict the pattern of inheritance of a particular trait in a family and gives information on gene transfer. Females are represented as circles and males as squares. Solid coloured shapes indicate that an individial has the trait/disease tracked.A dot or partially shaded shape indicates that an individual is a carrier
Asexual Reproduction
Many unicellular and some multicellular organisms reproduce via asexual reproduction. The process results in offspring that are genetically identical to the parent. There are three types: 1. Binary fission 2. Budding 3. Fragmentation
Asexual Reproduction Binary fission
Occurs in some single-celled organisms such as bacteria and amoeba. Genetic material within the parent cell is replicated while the cell elongates After the DNA is duplicated, the cell dives in half producing two identical daughter cells.The process is similar to mitosis but the latter involves nuclear disintegration and guidance of chromosomes by microtubules
Asexual Reproduction Budding
Yeast cells. Small bud cells are pinched off of from the parent by cell division
Asexual Reproduction Fragmentation
eg earthworms and plantsWhereby an organism may become fragmented into multiple pieces. Some or all of these fragments may grow into complete adults
Prokaryotic Genetic Diversity
- Mutations 2. Transformation 3. Transduction 4. Conjugation
Prokaryotic Genetic Diversity Transformation
Naked DNA from the environment is taken up by the prokaryotic cell and incorporated into its chromosome
Prokaryotic Genetic Diversity Transduction
Bacteriophages (viruses that infect bacteria) carry pieces of DNA from one bacteria to another
Prokaryotic Genetic Diversity Conjugation
Involves direct one-way transfer of genetic material from one organism to another. The donor extends a sex pilus to the recipient. A cytoplasmic bridge then forms between the two cells. A single strand of DNA from the donor’s bacterial chromosome or plasmid is transfered to the recipient. The bridge then breaks and the transferred DNA is taken up by the recipient’s bacterial chromosome or plasmid
Sexual Reproduction
Combines genetic material from two different sources to create offspring. Specialised germ cells undergo meiotic division and come together to form new individuals with new genetic combinations. Unlike mitosis which produces diploid cells (2N), meosis produces haploid gamete cells (1N). Even greater genetic diversity can be generated as genes are exchanged between chromosomes during crossing over during prophase I or meosis
Diploid Species
Have two sets of chromosomes, one from each parent
Gametes
Have half the chromosome number. Referred to as haploid
Chromosome Number in humans
The full complement of genetic material includes 22 chrmosome pairs called autosomes which don’t differ between the sexes and an additional pair of sex chromosomes. Total of 23 pairs
Inheritance Polymorphic traits
For example coat colour in rabbits - multiple alleles with varying degrees of dominance determine the resulting coat colour
Inheritance Polygenic traits
Traits determined by the additive effect of two or more genes
Inheritance Pleiotropic genes
Affect more than one phenotypic characteristic
Inheritance Incomplete dominance
Situation in which one allele doesn’t completely block the expression of another and alleles blend to form the phenotype. eg petal colour in snapdragons. If red (RR) and white (rr) floering plants are produced, the offspring will have pink flowers (Rr)
Inheritance Codominance
Where a heterozygous phenotype expresses both alleles equally. For example, blood types - determined by the alleles IA, IB and i corresponding to different types of antigens in the blood. An individual who is homozygous for IA or IB has an A or B phenotype. An individual who is heterozygous for IA and IB has an AB phenotype
Alleles
Alternative forms of a single gene. For any inherited trait, an individual possesses an allele from each parent
The Principle of Segregation
States that during meiosis, the two alleles from each parent segregate from each other resulting in gametes that each carry one allele for each trait
The Principle of Dominance
States that if the two alleles for a trait are different one allele will be dominant (fully expressed in the individual) and the other will be recessive (will not show itself)
Genotype
The genetic makeup of an organism
Phenotype
Actual physical characteristics of an organism
Test Cross Ratios 1. 100% Bb 2. 50% Bb, 50% bb 3. 25% BB, 50% Bb, 25% bb
1, BB x bb 2. Bb x bb 3. Bb x Bb
Dihybrid cross ratio
A 9:3:3:1 ratio is characterisic of crosses between individuals that are either homozygous recessive or homozygous dominant for two different independently assorting traits
Embryology Fetus
After eight weeks of growth, an embryo is known as a fetus
Embryology Development of the Fetus
- In the first few weeks, the placenta and unbilical cord form and become the specialised circulatory system between mother and fetus. This system provides nourushment via oxygenated blood in the unmbilical vein and removes metabolic waste via the umbilical arteries
Embryology Umbilical cord development
Develops from two embryonic sacs - the yolk sac ( the site of early blood vessel development) and the allantois (an outpocketing of the gut that contains many blood vessels)
Embryology Placenta
Formed when part of the chorion fuses to the uterine walls. In addition to supplying nutrients and removing waste, prevents toxins and drugs from entering the fetus and functions as an exocrine gland, producing the essential hormones of pregnancy: oestorgen, progesterone and hCG
Embryology Chorion
A membrane that surrounds the amnion
Embryology Amnion
The strong sac that houses the fetus and contains amniotic fluid
RNA Translation Ribosomes E site
exit site for the tRNA that has just finished adding its amino acid
RNA Translation Ribosomes P site
For the tRNA that is actively creating a peptide bond int eh growing polypeptide chain
RNA Translation Ribosomes A site
For tRNA that is bringing the amino acid to be added after that occupying the P site
Gene Structure Nucleotide
Composeed of one molecule of the sugar deoxyribose, one phosphate group and one of four nitrogenous bases: adenine, cytosine, guanine or thymine
Gene Structure DNA Structure
Double helix witha sugar-phosphate backbone and rings of paired nucleotide bases. Two hydrogen bonds link A and T while three join G and C
Gene Structure RNA Structure
Can be single or double stranded. Different to DNA in its composition in that the sugar ribose replaces deoxyribose and the nitrogenous base Uracil replaced thymine
Independent Assortment
During metaphase I of meiosis when chromosomes line up at the metaphase plate, there is no force that governs maternal chromosomes to orient themselves towards one pole and paternal chromosomes towards the other. For each homolougous pair, there is a 50% chance that the maternal chromosome will situate itself at a particular pole. Chromosome1 has no effect on the positioning of chromosome 7 - they are independent. Without considering crossing-over, the number of combinations of a daughter cell formed by meiosis of a parent cell with two homologous pairs of chromosomes is four
Linkage
Means genes for two given traits are linked on the same chromosome and will not follow Mendalian laws for independent assortment. Genes that are close together on the same chromosome are more likely to be inherited together. Genes that are farther apart are more likely to be separated by crossing=over and exchange
Recombination Frequency
The rate at which two genes become unlinked. By establishing this, it is possible to create genetic maps which show the locations of the various alleles on the chromosome
Sex-linked genes
Located on sex chromosomes. The X chromosome is much larger than the Y and carries these genes. As females have two X chromosomes, the dominant sex-linked allele is expressed and the recessive is not. In males any allele on the one X chromosome is expressed
Sex-linked genes -Inheritance
A woman can be heterozygous for a recessive sex-linked disease and act as a carrier. She is not affected but there i a 50% probability that her sons will suffer from the disease. The male X chromosome is passed onlyto female offspring. Therefore an affected male can pass the condition to female but not male offspring. If a daughter is homozygous for the recessive allele she will suffer from the condition. If she is heterozygous, she will act as a carrier
Sex-linked genes -Pedigrees
Depict the pattern of inheritance of a particular trait in a family and gives information on gene transfer. Females are represented as circles and males as squares. Solid coloured shapes indicate that an individial has the trait/disease tracked.A dot or partially shaded shape indicates that an individual is a carrier
Asexual Reproduction
Many unicellular and some multicellular organisms reproduce via asexual reproduction. The process results in offspring that are genetically identical to the parent. There are three types: 1. Binary fission 2. Budding 3. Fragmentation
Asexual Reproduction Binary fission
Occurs in some single-celled organisms such as bacteria and amoeba. Genetic material within the parent cell is replicated while the cell elongates After the DNA is duplicated, the cell dives in half producing two identical daughter cells.The process is similar to mitosis but the latter involves nuclear disintegration and guidance of chromosomes by microtubules
Asexual Reproduction Budding
Yeast cells. Small bud cells are pinched off of from the parent by cell division
Asexual Reproduction Fragmentation
eg earthworms and plantsWhereby an organism may become fragmented into multiple pieces. Some or all of these fragments may grow into complete adults
Prokaryotic Genetic Diversity
- Mutations 2. Transformation 3. Transduction 4. Conjugation
Prokaryotic Genetic Diversity Transformation
Naked DNA from the environment is taken up by the prokaryotic cell and incorporated into its chromosome
Prokaryotic Genetic Diversity Transduction
Bacteriophages (viruses that infect bacteria) carry pieces of DNA from one bacteria to another
Prokaryotic Genetic Diversity Conjugation
Involves direct one-way transfer of genetic material from one organism to another. The donor extends a sex pilus to the recipient. A cytoplasmic bridge then forms between the two cells. A single strand of DNA from the donor’s bacterial chromosome or plasmid is transfered to the recipient. The bridge then breaks and the transferred DNA is taken up by the recipient’s bacterial chromosome or plasmid
Sexual Reproduction
Combines genetic material from two different sources to create offspring. Specialised germ cells undergo meiotic division and come together to form new individuals with new genetic combinations. Unlike mitosis which produces diploid cells (2N), meosis produces haploid gamete cells (1N). Even greater genetic diversity can be generated as genes are exchanged between chromosomes during crossing over during prophase I or meosis
Diploid Species
Have two sets of chromosomes, one from each parent
Gametes
Have half the chromosome number. Referred to as haploid
Chromosome Number in humans
The full complement of genetic material includes 22 chrmosome pairs called autosomes which don’t differ between the sexes and an additional pair of sex chromosomes. Total of 23 pairs
Inheritance Polymorphic traits
For example coat colour in rabbits - multiple alleles with varying degrees of dominance determine the resulting coat colour
Inheritance Polygenic traits
Traits determined by the additive effect of two or more genes
Inheritance Pleiotropic genes
Affect more than one phenotypic characteristic
Inheritance Incomplete dominance
Situation in which one allele doesn’t completely block the expression of another and alleles blend to form the phenotype. eg petal colour in snapdragons. If red (RR) and white (rr) floering plants are produced, the offspring will have pink flowers (Rr)
Inheritance Codominance
Where a heterozygous phenotype expresses both alleles equally. For example, blood types - determined by the alleles IA, IB and i corresponding to different types of antigens in the blood. An individual who is homozygous for IA or IB has an A or B phenotype. An individual who is heterozygous for IA and IB has an AB phenotype
Alleles
Alternative forms of a single gene. For any inherited trait, an individual possesses an allele from each parent
The Principle of Segregation
States that during meiosis, the two alleles from each parent segregate from each other resulting in gametes that each carry one allele for each trait
The Principle of Dominance
States that if the two alleles for a trait are different one allele will be dominant (fully expressed in the individual) and the other will be recessive (will not show itself)
Genotype
The genetic makeup of an organism
Phenotype
Actual physical characteristics of an organism
Test Cross Ratios 1. 100% Bb 2. 50% Bb, 50% bb 3. 25% BB, 50% Bb, 25% bb
1, BB x bb 2. Bb x bb 3. Bb x Bb
Dihybrid cross ratio
A 9:3:3:1 ratio is characterisic of crosses between individuals that are either homozygous recessive or homozygous dominant for two different independently assorting traits
Embryology Fetus
After eight weeks of growth, an embryo is known as a fetus
Embryology Development of the Fetus
- In the first few weeks, the placenta and unbilical cord form and become the specialised circulatory system between mother and fetus. This system provides nourushment via oxygenated blood in the unmbilical vein and removes metabolic waste via the umbilical arteries
Embryology Umbilical cord development
Develops from two embryonic sacs - the yolk sac ( the site of early blood vessel development) and the allantois (an outpocketing of the gut that contains many blood vessels)