Revision deck Flashcards
What antibiotics target small ribosomal unit? How do they work?
Target decoding site: prevents tRNA binding or moving through ribosome
Doxycylin, streptomycin
What antibiotics target large ribosome unit? Function?
Erythromycin
Prevents polypeptide chain elongation
tRNA function?
serves as link between amino acids and mRNA
3 methods of proteins getting into organelles?
nuclear pores: for nuclear proteins
protein translocators: cytosol to ER, mitochondria, peroxisomes
transport vesicles: ER onwards
How do ribosomes know how to get to ER?
signal peptide on protein being made
What is signal peptide?
sequence on n-terminal amino acid (end of polypeptide)
What happens in exocytosis in golgi apparatus?
protein anchored to ER membrane
vesicles from ER fuse with plasma membrane
What happens in endocytosis in golgi apparatus? example?
address label added in golgi apparatus for mannose-6-phosphate
bind to specific receptor in golgi membrane
go to endosome, matures to lysosome
hydrolase enzyme
What is mannose-6-phosphate?
lysosomal sugar chain
What things are degraded by protaosomal degregation?
short half life
key metabolic enzymes
defective proteins
proteins tagged with ubiquitin
What things are degraded by lysosomal degregation? how are they brought into cell?
long half life
membrane proteins
extracellular proteins
endocytosis
examples of lysosomal enzymes? what are they activated by?
lipases
nucleases
proteases
lysosomal acidic environment
What is proteasomal degradation dependent on? Where does it happen?
atp
cytosol in protasomes
What proteins are in PEST sequence?
proline
glutamic acid
serine
threonine
2 ways to segregate molecules?
organelles
multicomponent complexes e.g. organelles
where are proteins made?
cytosol on ribosomes
2 parts of ribosome?
60s+40s=80s
where is polypeptide threaded through?
protein channel translocon on ER membrane
What does electron transport chain require?
cytochrome c on inner membrane
how is apoptosis initiated?
release of cytochrome c from mitochondria to cytosol
peroxisome function? how? example?
degrades fatty acids by beta oxidation egg, oxidative enzymes, catalase
3 types of cytoskeleton?
microtubules
microfilaments
intermediate filaments
3 types of intermediate filaments?
keratin
vinementin (fibroblasts)
laming (nuclei)
intermediate filaments function?
structure and strength
function and composition of microtubules?
cell movement
organelle transport
mitotic spindle
a and b tubulin
2 yes of microtubules?
kinesics: cargo away from centrosome
dyne’s: cargo toward centrosome
axoneme function?
cytoskeleton of cilia and flagella
allow bending
(microtubules and dynein)
what are microfilaments made of and functions?
actin polymers
microvilli, stereo cilia, shape change, cytokenesis
2 cell-cell junctions and their cytoskeleton?
adherens - actin
desmosomes - intermediate filaments
2 cell-ecm junctions and their cytoskeleton?
focal adhesions - actin
hemidesmosomes - intermidate filaments
4 anchoring junctions?
adherens
desmosomes
hemidesmosomes
focal adhesions
gate and fence function (tight junctions)?
gate - regulates paracellular permeability
fence- forms apical and basolateral inter membrane diffusion barrier
gate is middle, fence 2 sides
gap junction composition?
hexameters and connexins
what specialisations do plasma cells have to produce antibodies?
RER, golgi apparatus
hepatocyte function?
lipid biosynthesis
leydig cell function?
steroid hormone biosynthesis
3 cilia functions?
mucus clearance
circulate csf
help ovum to uterus
what happens I Alzheimers?
tau protein dissociated from microtubules causing microtubule dissassembly
tay Sachs disease?
build up of gangliosides (lipids) in brain and spinal cord
deficiency In lysosomal enzyme
what are tight junctions composed of? where?
cluadins
epidermis
adherens composition? function?
cadherins
morphogenesis: contractility
desmosome composition? where?
desmosomal cadherins
keratins in epidermis connection
focal adhesion and hemidesmosome composition? focal adhesion function?
integrins
cell migration
what is membrane of gram negative bacteria?
lipopolysaccharide
order of gram staining?
crystal violet
grams iodine
ethanol
safranin
which cells take up residence in tissues?
dendritic cells
macrophages
mast cells
what activates complement? why does this happen?
plasmin
coagulation system activated in response to trauma
3 parts of complement causing inflammation? what do these activates?
c3a, c4a, c5a
mast cells
how do mast cells cause inflammation?
inflammatory mediators e.g. bradykinin
inflammatory lipids
cytokines
name inflammatory lipids?
prostaglandins
leukotrienes
platelet activating factor
name cytokines?
IL - 1,6,8,12 and TNF
Macriphage function? where do they come from?
phagocytose debris and kill with lysosomes, tissue repair
tissue resident or monocytes in blood
how do macrophages kill?
have phagocytic receptors binding microbes
bound material taken into phagosomes and broken down in phagolysosomes
How do toll like receptors work?
recognise PAMPs and then activate macrophages/dendiritic cells
what is interstitial fluid?
portion of plasma not re taken up by blood vessels, instead taken up by lymphatic vessels
where is lymph drained?
upper right body : right subclavian vein
upper left and lower body: left subclavian vein
lymph functions?
carries digestive proteins and fats
transports immune cells
lymph node function?
collects antigen from periphery
activates adaptive immune response
spleen function?
removes cellular waste and old blood cells
controls levels of blood cells
cellular and acellular microorganisms?
cellular: bacteria, fungi, protazoa
acellular- viruses, prions
how does bacteria reproduce?
binary fission
what bacteria is gram stain unreliable?
small, atypical life cycle, atypical structure
name GP cocci and rods, GN cocci and rods.
GP cocci:
staphyloccus aureus
streptococcus pneumonia’s
GP rods:
listeria monocytogenes
corynebacterim diphtheria
GN cocci:
nesseiria meningitidis
GN rods:
salmonella
E COLI
colonisation benefits?
inhibit infection
immune stimulation
vit K and B produced as by products
where are endotoxins found? example? what happens?
gram neg bacteria wall
lipopolysaccharide
when cell dies causes immune stimulation and sepsis
what are super antigens? where found? what happens?
exotoxins
gram positive
produced intracellular and released as mature toxins on infection
staph a, strep pyrogenes
TSS
T cell stimulation
what condition can zika cause?
microcephaly
through mosquitoes
how is monkeypox transmitted?
body fluids
mosquito borne diseases?
zika
elephantitis
malaria
yellow fever
dengue
west nile virus
how is:
plague
leishmanisis
lyme disease
african trypsosomaiis
caused?
fleas
sandflies
ticks
tsetse flies
what does kissing bugs cause?
chronic GI disease
water borne disease?
cholera
salmonella
ecoli
enterovirus
drug for schistosomiasis?
praziquantel
What is involved in innate immune response?
complement
neutrophils
macrophages
how does complement work? what are its activators and outcomes?
series of proteins in plasma, forms complex which is inserted into bacterial wall to kill them
antigen:antibody complexes, pathogen surfaces
inflammatory cell recruitment, opsonisation/killing of pathogens
when is innate and adaptive response?
innate - 4 hrs
adaptive: 96 hrs
how long do neutrophils live?
6-12hrs
primary and secondary neutrophil granules?
primary: lysozyme, myeloperoxidase, proteases/hydrolases
secondary: lysozyme, collegenase, lactoferrin
4 steps of innate migration?
rolling adhesion
tight binding
diapedesis
migration
pseudopodia function?
finger like projections of macrophages encapsulating apoptotic cells
humoral vs cell mediated response?
humoral: B cells make antibodies
cell mediated: T cell attack
what are B cell receptors?
antibodies
what does clonal selection?
antigen
what are epitopes:
things antibodies bind to
what is antibody neutralisation?
blocks adhesion of bacteria and viruses to mucosa
blocks active site of toxin
helper T cell function?
produce cytokines to direct immune response
help B cells and cytotoxic t cells
direct innate responses
what allows thymus to identify T cells?
cd3 complex
what is MHC I involved with?
cd8 cells
recognise antigen presented in context of mHC I in many cells and can be induced to kill
what is MHC II involved with?
CD4 cells
recognise antigen presented in context of MHC II on APCs and help them
what 3 signals do T cells require to activate?
antigen presented in MHC
surface molecule costmulation
cytokines
how are B cells activated?
T cells recognise antigen and produces effecter molecules to mature it
what 2 cell tyoes do B cells form?
memory
antibody secreting plasma cells
3 things required for clotting?
clotting factors
ca ions
negative phospholipid surfaces
capsule and pilli function in bateria?
capsule: slimy to avoid phagocytosis
pilli: attachment to host cell
how do bacteria bind to host cells?
adhesins - pilli coated in these
when are eosinophils active?
parasitic worms
allergic reaction
when are basophils active?
allergic reaction
plasma composition?
92% water
8% proteins, immunoglobulins, electrolytes
plasma functions?
collects waste around the body and transports to kidneys
maintain body temp
fibrinogen production
electrolytes maintain blood ph
how long do RBCs live and where are they broken down?
120 days
spleen/liver
how is platelet plug formed?
endothelium disrupted exposing collagen and von willebrand factor
platelets activated and adhere
release granules to recruit more platelets
what happens in extrinsic pathway?
activated when tissue factor III exposed
III binds with Ca and VIIa to activate X
factor VII requires vit K to activate
what happens in intrinsic pathway?
activated by activate dplatelets
IXa, VIIIa, Ca form complex to active X
how is factor VIII activated?
thrombin
what happens in final common pathway?
prothrombin to thrombin (Xa and V)
fibrinogen (soft clot) to fibrin (hard clot) by cross linking
how are clots lysed?
plasminogen converted to active plasmin by tpA
explain order of emergency triage
red - immediate - cardiac arrest
orange - 10-15 mins
yellow -60 mins
green - 4 hrs
blue go home
describe 4 types of shock?
distributive: severe peripheral dilation, anaphylaxis (histamine), sepsis (cytokines), neurogenic
hypovolaemic: loss of intracellular volume, e.g. haemorrhage, burns, trauma, GI bleeding, DKA
cariogenic: pump failure, arrythmia, MI
obstructive: barriers e.g. cardiac tamponade, pulmonary embolism
cardiac output formula?
HR x SV
What is a blood shunt?
take blood from non vital organs to allow heart to pump
triad of blood loss?
decreased coagulation = increased lactic acid in blood
acidosis = decreased heart performance
hypothermia = decreased coagulation
laceration vs incision wound?
laceration -blunt force trauma
incision - slash/stab
start codon and 3 stop codons?
AUG
UGA, UAG,UAA
degeneracy meaning?
different amino acids can make same protein in case of mutation
how do amino acids join?
condensation
sickle cell aneamia cause?
beta globin gene mutation
cystic fibrosis cause? usual function of gene?
CFTR
mucus transport in lungs/pancreas, chloride ion channel
mucus composition?
proteoglycans
glycocalyx function?
physical barrier around cells
Why do lipids appear optically empty?
dissolved in processing
how is Lyme disease contracted?
tick bites
what structure is staphylococcus aureus?
blue cocci in clusters
what cell is in pus?
neutrophils
IL-8 function?
attracts neutrophils
T helper 1 function?
macrophage activaton
which cells are MHC II?
dendritic cells
macrophages
B cells
which cells are MHC I?
nucleated cells
what happens to B cells in spleen?
activation and expansion
which is the first antibody produced in response to infection?
IgM