Regulation of Bacterial Gene expression Flashcards

exam 3

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1
Q

in bacteria, multiple genes can be in the same transcription unit

A

operon

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2
Q

a sequence of DNA bases that is transcribed to give a single, discrete complementary RNA

A

transcription unit

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3
Q

Toxin B and holin

A

operon

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4
Q

positive regulator

A

tcdR

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5
Q

toxin B

A

tcdB

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6
Q

holin

A

tcdE

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7
Q

ToxinA

A

tcdA

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8
Q

negative regulator

A

tcd C

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9
Q

positive regulator, toxin B, holin, Toxin A, negative regulator

A

pathogenicity locus

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10
Q

special region of DNA where RNA polymerase binds for the purpose of initiating transcription

A

Promoter site

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11
Q

a site within the DNA or RNA product at which RNA synthesis stops

A

Termination Site

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12
Q

two key elements of most promoters

A

-35 and -10

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13
Q

blocks elongation

A

rifamycins

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14
Q

blocks initiation

A

lipiarmycins

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15
Q

example of a lipiarmycins

A

fidaxomicin

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16
Q

exampled of rifamycins

A

rifampicin

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17
Q

inhibitors of RNA synthesis that bind to Beta subunit of RNA polymerase

A

Rifamycins and Lipiarmycins

18
Q

necessary for recognition of the promoter region of a gene

A

sigma subunit

19
Q

Release of ______ after initiation of transcription from ______

A

sigma subunit from the holoenzyme

20
Q

alpha-2-Beta-Betaprime-sigma

A

Holoenzyme

21
Q

alpha-2-Beta-Betaprime

A

Core enzyme

22
Q

There is one type of RNA polymerase _______ but many kinds of _______

A

There is one type of RNA polymerase core enzyme but many kinds of sigma-subunits

23
Q

Different ______- recognize promoters with different sequencces

A

sigma subunit

24
Q

encoded in the DNA sequence appearing as a region of dyad symmetry

A

Factor-independent termination

25
Q

binds directly to RNA pol and causes the polymerase to stop and release when reaching the factor-dependent termination

A

Rho factor

26
Q

receptor-dependent termination requires _____ for ______________

A

Rho factor for transcription termination

27
Q

positive regulator and binds upstream of the promoter

A

X

28
Q

negative regulator, a represor binding site that can overlap promoter or be downstream of the promoter

A

Y

29
Q

sigma factor for toxin gene transcription

A

TcdR

30
Q

antibiotic and toxin production in liquid medium

A

Stationary- tcdR

31
Q

tcdR is inactivated by ______ in the _______ phase

A

CodY-Ile is active in the exponential phase

32
Q

tcdR is expressed in the

A

stationary

33
Q

cody only works a repressor when

A

isoleucine is bound

34
Q

more isoleucine in the

A

exponential phase

35
Q

metabolic active phase

A

exponential

36
Q

CoDY is _____ in stationary phase

A

inactive

37
Q

CoDY is ______ in exponential phase

A

active

38
Q

tcdR in nutrient limitation

A

active and toxins synthesized

39
Q

anti sigma factor

A

tcdC

40
Q

tcdC binds to ____ and inactivates it

A

tcdR

41
Q

High toxin production:

a. Mutation in tcdC that inactivates the protein
b. Mutation in tcdR that inactivates the protein
c. Mutation in codY that inactivates the protein
d. Mutation in promoter of tcdB that inactivates the promoter

A

a. Mutation in tcdC that inactivates the protein

AND

c. Mutation in codY that inactivates the protein