protein metabolism Flashcards
how much protein will a person contain?
about 1/7 of their weight in kg (over 1/2 of which in skeletal muscle)
what is the continual turnover of proteins per day?
and what is meant by protein turnover?
about 300g
constant use and restoration of protein (between amino acids to protein)
what is muscle protein synthesis?
building up of amino acids into a functioning muscle
what is muscle protein breakdown?
degradation of polypeptide chains (string of amino acids joined by peptide bonds) within muscle
what is meant by net balance?
how to calculate it?
relationship between synthesis and breakdown
net protein balance = protein synthesis - protein breakdown
when will protein and hence muscle be gained?
when the amount of protein synthesis exceeds the amount of protein breakdown
= net positive protein balance
to gain muscle have to always be in this state
does protein turnover always = net balance?
what are they both?
give an example of how they are different?
no
turnover is just what is happening with protein (not looking at whether balancing)
if more synthesis, increase in positive protein balance (net balance) but also increase in turnover (total of what is happening/activity has increased compared to steady state)
describe protein half lifes?
they vary and some may be less than an hour (good to adapt to situations)
others e.g myofibrillar take days/weeks
what is gene expression?
what is needed for it to occur
what is meant by selective egene expression?
process by which genetic info is converted into structures and functions of a cell (requires protein modifcaion to occur)
selecting which genes need expressing in environment placed in to achieve desired outcome
describe tRNA charging?
critical step in protein translation
amino acid + ATP + tRNA to aminoacyl-tRNA + AMP + Pi
what are the 3 stages of translation? (2nd stage of protein synthesis)
1) initiation - 2 parts of ribosome attach to mRNA (requires energy) and call out to 1st tRNA molecule to attach
2) elongation - continual transfer of tRNA molecules to ribosome
peptide bond occurs between AAs and tRNA molecule drops off
3) termination - at end of mRNA at stopcodon and 2 parts of ribosomes split and it disappears
left with polypeptide chain
what is the journey of protein once it is ingested into the body?
several routes
dietary protein to amino acid pools to body proteins/any nitrogen containing compounds (some may be lost through skin and hair)
feed back into pool as can be broken down
AAs once amonia removed can form CHO and fat to use for energy
and some non-essential AAs can be made by CHO and fat
amine group converted into urea and excreted through sweat or urine
is protein stored in the body?
no, it is all functional
what will happen to proteins in a starving situation?
will be degraded (especially analine) into amino acids
amine group removed
converted to form glucose and fat
describe protein synthesis?
DNA
transcription
translation
DNA contains sense and nonsense strand
have letters relating to nucleotides (T&A and C&G)
dna will split into sense and nonsense strands (transcription)
RNA polymerases will make mRNA (has U instead of T)
take mRNA, leaves nucleus via nuclear pore and goes into cytoplasm
translation occurs - tRNA has anticodon (complimentary to mRNA)
attaches, drops off AA and unattaches
ribosome is going along mRNA and asking tRNA molecules to come in to make AA chain
continues until reach stopcodon
what is always the first amino acid in a polypeptide chain?
methionine
MET
what is transcription?
formation of complimentary strand of mRNA based on gene expression
what is translation?
process by which info along mRNA is converted into polypeptide chain
what is post-translational modification?
changes in shape, folding of amino acid chain
what are some transcription factors?
activators - promote transcription by binding onto enhancer sites to enhance transcription
coactivator proteins - send signals which help RNA polymerase to get into correct position
repressors - bind to silencor sites to stop mRNA from being made
what regulates RNA polymerase?
general factors - set general rate
specific factors - change speed of rate
what regulates the rate of transcription?
1) hormones and growth factors
have direct effect by binding to specific receptor in cell
2) secondary messengers
bind to receptors on cell membrane to cell signal