Protein metabolism Flashcards

1
Q

basic process
- what initiates it and where
- what is released in the next place
- what does this result in and what happens to them

A
  • in the stomach initiated by pepsin and hydrochloric acid
  • pancreatic proteases and enterocyte proteases are secreted in the small intestine.
  • peptide fragments and free amino acids that are absorbed by the small intestine.
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2
Q

where do amino acids produced during digestion go

A
  • Gut/gastrointestinal tract extracts 40-50% of all amino acids.
  • Remaining AAs enter the hepatic portal vein and are taken up by the liver.
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3
Q

how many aas are used for energy

A
  • ~40% is then catabolized via ureagenesis for energy
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4
Q

digestion in the stomach more detail
- how are the proteins denatured
- what hydrolysis the proteins peptide bonds
- what secretes these things

A
  • highly acidic environment (pH 1.5-3.5)
  • hydrochloric acid and the enzyme pepsin making smaller proteins
  • secreted by gastric glands and mix in the gastric juice
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5
Q

how does pepsin become active

A

When pepsinogen and hydrochloric acid mix in the gastric juice, pepsinogen unfolds forming active enzyme pepsin

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6
Q

digestion in the small intestine more detail
- how are denatured proteins neutralised
- why does this happen
- how are denatured proteins degraded to AAs
- what are AAs used for

A
  • enzyme secretin which acts on the pancreas to secrete bicarbonate.
  • protects the intestinal wall from the high acid stomach acids.
  • by 6 enzymes to (tri/di)peptides, then into single AAs via specific protease enzymes (for each tri/dipeptide)
  • enter circulation for use as a substrate for energy or protein synthesis.
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7
Q

the protein content of the human body
- how vastly present are proteins
- what per cent of male and female mass is protein

A
  • present in every cell in the body, as well as extracellular fluids
  • Men = 16% total protein
  • Women = 14% total protein
  • due to women having more adipose tissue
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8
Q

protein synthesis
- what is the process called
- process

A
  • anabolic signalling
  • Amino acids are sensed and Transported across the muscle cell membrane via SNAT2 & LAT1.
  • stimulating a cascade of protein signalling and phosphorylation (activation) via Sestrin-2.
  • mTOR is translocated to the lysosome to become ‘active’.
  • mTOR then phosphorylates several proteins (S6K1, RPS6, 4E-BP1) to initiate protein translation at the ribosome (mRNA), subsequently increasing protein synthesis.
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9
Q

protein breakdown
- process

A
  • Proteins are marked for degradation by the attachment of E3 ubiquitin ligases MuRF1 and MAFbx
  • the ubiquitin is recognized and degraded by a protease complex, called proteasome.
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10
Q

relationship between protein synthesis and breakdown in healthy compared to older/diseased

A
  • healthy about equal so zero protein balance so protein mass remains stable
  • not case for old/diseased
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11
Q

impact of Exercise on protein turnover and net balance
- relationship between breakdown and synthesis in a fasted state
- relationship between breakdown and synthesis following exercise
- relationship between breakdown and synthesis in a fed state

A
  • breakdown exceeds synthesis so is. negative net balance
  • both protein synthesis and breakdown increase. However, a negative net balance is still apparent.
  • synthesis far exceeds protein breakdown, and a positive protein balance
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12
Q

amino acid degredation
- how do amino acids produce energy
- what is the first step of aa degradation
- what 4 things can happen to glutamate
- what by-product is formed during oxidative deamination

A
  • enter the citric acid cycle at various points following degradation (in the liver) to support energy demand
  • most amino acids transfer their amino group to aketoglutarate by transamination, producing glutamate
  • enter the citric acid cycle to produce aerobic energy, convert back to a-ketoglutarate by losing the amino group via oxidative deamination (via glutamate dehydrogenase), can be converted to glutamine by adding an amino group which then disposes amino groups in other tissues, glutamate can transaminate to pryruvate forming αlpha-ketoglutarate and alanine
  • amino acid from glutamate is given off in the form of ammonia which is converted to urea and excreted during the urea cycle
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13
Q

how many amino acids are
- glucogenic (can produce glucose)
- ketogenic
- both glucogenic and ketogenic

A
  • 14
  • 2
  • 4
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14
Q

transamination
- what is it
- what enzyme catalyses it
- what keto acid is most commonly involved

A
  • transfer of an amino acid from 1 molecule to another
  • aminotransferase
  • alpha ketoglutarate
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15
Q

deamination
- what is it
- what happens to the thing removed

A
  • The amino acid removal of its amino group.
  • Ammonia is formed and converted into urea in the liver, it is excreted in urine and sweat.
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16
Q

use of carbon skeletons for generating energy
- how are they formed
- what happens to them
- when are they used to generate energy

A
  • left over when amino group removed
  • different aa feed into different parts of krebs generating different amounts of NADH and FADH2
  • not as efficient as glucose but used when glucose is low
17
Q

how many amino acids can we not synthesise and how do we get them
- what do we call them

A
  • 9 of 20 amino acids – we consume them in our diet to support protein synthesis.
  • essential aas
18
Q

what are branch chain amino acids (BCAAs)

A

Leucine, Isoleucine and Valine are unique as they bypass degradation by the liver.

19
Q

how many aas can we synthesise and what do we call them

A

11 – non-essential.

20
Q

the 2 glucose producing pathways in the liver

A

○ The Cori cycle (lactate) - lactate produced by anaerobic glycolysis in muscles is transported to the liver and reforms pyruvate. pyruvate is used as a substrate in gluconeogenesis and is converted to glucose, which then returns to the fatiguing muscles
○ Glucose-Alanine cycle (alanine) – alanine is transported to liver where transamination of its amino group to alpha-ketoglutarate occurs forming glutamate and pyruvate. these are used in gluconeogenesis to produce glucose which is transported back to the muscle (up to 15% of total energy demands

21
Q

the urea cycle
- what and where is it
- what is the process (5 steps)
- what happens to the product after the cycle
- what can the urea: nitrogen ratio give an estimate of

A
  • the conversion of ammonia to urea in the mitochondria of liver cells
  • ammonia to carbamoyl phosphate.
  • This links with Ornithine to produce Citrulline
  • then converted to arginine succinate
  • then splits to arginine & fumarate
  • arginine is hydrolyzed via arginase to form urea.
  • enters the blood, is filtered by the kidneys and is excreted in urine
  • whole body protein breakdown
22
Q

plasma aas and contribution to energy expenditure
- total aa conc in plasma
- which 2 aas are the most abundant
- the impact of normal exercise on aa conc
- the impact of exercise over 2 hours on aa conc

A
  • 3-4 mmol/L
  • glutamine and alanine
  • largely unaffected
  • decrease around 30%