Protein Flashcards

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1
Q

What are amino acids made up of?

A

Amino group- H2N
Carboxylic acid group- COOH
R group- a change in R group changes the amino acid

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2
Q

How are amino acids joined together

A

Peptide bonding which is a condensation reaction and joins amino acids together

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3
Q

What is formed by many amino acids

A

A polypeptide

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4
Q

role of R groups

A

R groups are able to interact with each other forming different types of bonds. This leads to a long chain of amino acids folding into complex structures.

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5
Q

what is the Primary structure

A

Sequence of amino acids

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6
Q

what is the Secondary structure

A

Hydrogen bonds between amino group and carboxylic acid group cause the polypeptide to coil into different shapes.

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7
Q

what is the Tertiary structure

A

Folding of the protein into its final shape. This is where R groups interact with each other.

  • hydrogen bonds
  • ionic bonds
  • disulfide bonds
  • hydrophobic and hydrophilic interactions
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8
Q

what is the Quaternary structure

A

Proteins made of several polypeptide chains. The two subunits can be the same or different and can interact the same way as the tertiary structure.

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9
Q

Testing for protein

A

Place protein solution into a test tube and add biuret reagent. If positive a lilac solution is formed.

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10
Q

what are fibrous proteins

A

Fibrous proteins have a structural role and are made up of strong long chains. They are insoluble in water as they have a high proportion of hydrophilic r groups.

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11
Q

describe Keratin

A

A fibrous protein present in hair, nails and skin. There is a high proportion of cysteine a sulfur containing amino acid. There are many strong disulfide bonds forming forming strong, inflexible and insoluble material. The degree of flexibility is determined by the number of bonds.

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12
Q

describe Elastin

A

A fibrous protein found in elastic fibres which are in walls of blood vessels and in the alveoli of the lungs. They allow flexibility to expand but return to their original size. Elastin is a quaternary protein made from stretchy molecules called trapoelastin.

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13
Q

describe Collagen

A

Is a fibrous protein. It is a connective tissue found in skin, tendons, ligaments and the nervous system. They are all made of three polypeptides wound together in a long and strong rope structure. Collagen has flexibility.

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14
Q

what are Globular protein

A

Are compact, water soluble and usually roughly spherical in shape. R groups on the amino acid are kept away from aqueous environments. Hydrophilic R-groups are on the outside of the protein. This means they are soluble in water. They are used to regulating processes such as chemical reactions.

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15
Q

what is Insulin

A

Is a globular protein and a hormone that regulates blood glucose levels. Hormones are transported in blood and need to be soluble. Hormones have to bind to specific receptors on the cell surface membrane.

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16
Q

what are Conjugated protein

A

Are globular proteins that contain a non protein component called a prosthetic group. These proteins are simple. There are different types of prophetic groups, lipids or carbohydrates can combine forming lipoproteins and glycoproteins.

17
Q

what Haemoglobins structure

A

It is a quaternary protein made from 4 polypeptides, 2 alpha and 2 beta sub units. Each sub unit has a haem group containin iron II. Iron II combine reversibly with oxygen.

18
Q

what is Catalases structure

A

Is an quaternary protein containing 4 haem prosthetic groups. Iron II ions allow catalase to interact with hydrogen peroxide and speed up breakdowns. Hydrogen peroxide is a byproduct of metabolism but is damaging to cells if it accumulates.

19
Q

Chromatography

A

The mobile phase moves through the stationary phase. Components spend different amount of time in mobile phase. The longer they spend in the mobile the further they travel.

20
Q

How do you calculate rf values

A

Distance travelled by spot/distance travelled by solvent

21
Q

What are the uses of rf values

A

They are the ratio of the distance travelled by spot to the distance traveled by solvent. You can uses these to identify separate molecules.

22
Q

What bond joins amino acids and what time of reaction is it

A

A peptide bond, formed in condensation reactions

23
Q

What are cations

A

Positively charged ions

24
Q

Give examples of cations

A
Ca²⁺ 
Na⁺ 
K⁺ 
H⁺ 
NH₄⁺
25
Q

What are anions

A

They are negative ions

26
Q

Give examples of anions

A
No₃⁻ 
HCO₃⁻ 
Cl⁻ 
OH⁻ 
PO₄³⁻