Paper 3A Flashcards
What is a cell?
A basic unit of structure and function in an organism
What does a eukaryote have? Example of some
A true nucleus with a nuclear envelope surrounding the chromosome and membrane bound organismsAnimal and plant cells
What does a prokaryote have? Example of one
Don’t have membrane bound organelleFree floating DNA and plasmids, not a nucleus
What does a plant cell have?
ChloroplastsNucleusCell membraneCell wallVacuoleCytoplasm
What does an animal cell have?
NucleusPlasma membraneMitochondriaRibosomesCytoplasmGolgi apparatusSmooth endoplasmic reticulumRough endoplasmic reticulumNuclear envelopeNucleolusNucleoplasmVesicles
What does a bacteria cell have?
FlagellumPlasmidsFree floating DNACytoplasm - containing ribosomes
What does a yeast cell have?
Cell wallCell membraneVacuoleCytoplasmNucleus
Parts of a chloroplast
Double membraneThylakoidGranaStroma
structure of Nucleus
Nucleus surrounded by a nuclear envelope (a double membrane)Nuclear pores allow the passage of large molecules out of the nucleusNucleoplasm jelly makes up a bulk of the nucleusNucleolus within the nucleoplasm manufactures RNAChromosomes
Function of Nucleus
Store genetic informationControl centre of the cell
Structure of Ribosome
2 sub units (one small one big)Each contain ribosomal RNA and protein
Function of ribosome
Site of protein synthesis
Difference between 70S and 80S ribosomes
80S – eukaryotic cells, 25nm diameter70S – prokaryotic cells, mitochondria, and chloroplasts, slightly smaller than 80S
Structure of mitochondria
Bound by a double membraneOuter membrane = MatricInner membrane = CristaeHas its own strand of DNA
Function of mitochondria
Respiration“Powerhouse of the cell”Aerobic RespirationProduction of ATP
Structure of the cell membrane
Around the whole cell
The function of the cell membrane
Controls what diffuses in and out of the cell
Structure of Rough Endoplasmic Reticulum
Ribosomes present
The function of Rough Endoplasmic Reticulum
Protein synthesisPathway for the transport of materials (like proteins throughout the cell)
Endoplasmic Reticulum general info
‘ER’Connected to the outer nuclear membrane
Structure of Golgi Apparatus
Stack of membranes = flattened sacsMembranes contain small hollow structures called vesicles
The function of the Golgi Apparatus
Transport, modify and store proteins and lipids produced by the Endoplasmic ReticulumMolecules transported to and from the Golgi by vesiclesProduces Lysosomes and secretory enzymesCell post office – receives, sorts and delivers
Structure of Smooth Endoplasmic Reticulum
No ribosomes
The function of smooth endoplasmic reticulum
Synthesize, store and transport lipids and carbohydrates
Cytoplasm
Between the membrane and nucleus, made up of mainly water
Lysosome
MembraneContained up to 50 enzymes
Chloroplast
Outer and Inner membraneOpen space in the stromaThylakoid stacks (Grana) provides surface area
Permanent Vacuole
Large membrane bound sacs
Cell wall
On top of the cell membrane, around the whole cell
Cytoplasm
Houses all the organelleWhere chemical reactions take place
Lysosome
Garbage disposal of the cellRemove useless/dangerous materialFormed when vesicles produced by the Golgi contain useful enzymesContain digestive enzymes to break down waste
Chloroplast
Captures light for photosynthesis
Permanent Vacuole
Provides structure and support for the cell and holds sap/water
Cell wall
Provides structure and support for the cell
What are the 3 main adaptations a cell can have?
number of RER and GolgiNumber of mitochondriaSurface area
How does the number of RER and Golgi affect a cell? What cells would need this adaptation?
Increased protein synthesis and production as well as transport for these proteins (and hormones)Useful for cells that need lots of proteins for example cells that produce enzymes
How does the number of mitochondria affect a cell? What cells would need this adaptation?
Increased respiration which in turn increases energy for cells that need a lot of energyFor example muscle of sperm cells
How does surface area size affect a cell? What cells would need this adaptation?
Increases room to diffuse but also space to carry thingsRed blood cells have no nucleus, so, therefore, a bigger surface area, so that it can carry more oxygen and waste products
Which is bigger prokaryotes or eukaryotes?
Eukaryotes
Explain DNA in eukaryotes
Membrane-bound in a true nucleus
Explain DNA in prokaryotes
Free-floating or in plasmids, not membrane-bound
Which organelles are present in prokaryotes?
PlasmidFree-floating DNAFlagellumRibosomes
Which organelles are present in eukaryotes?
NucleusRibosomesMitochondriaGolgi ApparatusSERRERVesiclesLysosomes
Are ribosomes membrane-bound?
No, but RER is
Is there any photosynthetic material present in prokaryotes? Why?
No, chloroplasts are too big, but some big bacteria’s do have some photosynthetic material
Which ribosomes are present in prokaryotes?
70S
Which ribosomes are present in eukaryotes?
80S70S (in mitochondria and chloroplasts)
What are cell walls made of in prokaryotes?
murien
What are cell walls made of eukaryotes?
Cellulose
Describe the basics of an antigen
.On the surface of all cells are chemical markers called antigens.Your body recognises the antigens on your cells as your own.Anything with different antigens to yours stimulates an immune response.In an immune response, your body will recognise the antigen as foreign and will attack it
Which molecules can act as anitgens?
. Proteins. Glycoproteins
Why are antigens important?
. Initiate immune response to pathogens. Allowing recognition of faulty cancer cells. Recognition of cells from other organisms of the same species
How does antigenic variation work?
.Some pathogens can mutate which causes changes in the surface antigens.The memory cells from the first infection won’t recognise the different antigens.The immune system must carry out a primary response against the new antigens
What is phagocytosis?
Phagocytosis is when phagocytes (a type of white blood cell) engulf and break down an invading pathogen in order to protect the body, it is a part of the immune system.
What type of response is phagocytosis?
Phagocytosis is a non-specific response
Describe the steps of phagocytosis
- The phagocyte is attracted to the pathogen by detecting the toxins it is releasing2. The phagocyte moved towards one of the pathogens3. The phagocyte begins to surround the microbe. A vacuole forms around it.4. The phagocyte engulfs the pathogen5. The pathogen is inside a vacuole like phagosome in the phagocyte6. Lysosomes fuse with the phagosome and secrete digestive enzymes into the phagosome7. The pathogen inside the phagosome is digested by these enzymes and destroyed
What are the roles of T cells?
.Produces memory T Cells.Stimulates phagocytosis.Kills infected cells – making holes in their membranes.Stimulates B cells to divide
How does an antigen presenting cell come about?
B cells with an antibody that is complementary to the antigen of invading pathogens takes up the surface antigenThis antigen is presented on the surface of the B cell
What happens to an antigen presenting cell?
A T helper cell attaches to the processed antigens on the B cells thereby activating the B cell meaning it produces by mitosis to produce clones
When B cells divide by mitosis what is formed?
They can either become memory cells or plasma cells
Where are memory cells found and what are ready to do?
Memory cells circulate in blood and tissue fluid in readiness to respond to a future infection by the same pathogen whos antigen was used in the process of forming them
What do plasma cells do?
Plasma cells produce antibodies that exactly fit the antigens on the pathogens surface
What do antibodies do?
The antibodies attach to antigens on the pathogen and destroy them
If the same infection occurs again what do memory B cells do?
If the same infection occurs again the memory B cells divide and develop into plasma cells that produce antibodies
List 3 functions of antibodies
.Coat the pathogen with antibodies to make it easier for the phagocyte to engulf it.Coat the pathogen with antibodies to prevent it from entering host cells.Antibodies bind to and neutralise (inactivate) toxins produced by the pathogen
How are B cells and C cells both needed to remove a pathogen from the body?
The responses interact with each other.T cells activate B cells and antibodies coat pathogens making it easier for phagocytes to engulf them
If you see the word humoral in the exam what do you think?
B cells
What produces antibodies?
B cells, more specifically plasma cells
Are antibodies specific?
yes
Name 6 parts of an antibodies structure
- Antigen binding sites2. Variable region3. Constant region4. Light chains5. Heavy chains6. Receptor binding sites
Draw and label antibodies
idk check your revision guide or google if its right?
Why are the variable regions on antibodies called that?
As the binding sites differ
What gives the variable region its specific 3d shape in antibodies?
The sequence of amino acids
In antibodies, where does the constant region bind to?
receptors
Each binding site on an antibodie is c____________ to a specific antigen
complementary
When an antibodies binding site binds to an antigen what is formed?
forms an antigen-antibody complex
Roles of antibodies
.Antibodies do not directly destroy antigens.Agglutination.Markers
What happens in agglutination
Antibodies clump bacteria cells together which is helpful as it means they can be taken in by phagocytes for digestion much more easily since they are easier to locate as they are less spread out
How do antibodies act as markers?
They can act as markers that stimulate phagocytosis
What is a polyclonal antibodie?
.Pathogens can have many antigens on their surface that can activate many B cells.Each of these B cells will clone copies and will produce different antibodies.These are collectively known as polyclonal antibodies
What are monoclonal antibodies?
.It is useful to be able to produce antibodies outside of the human body.It is even better if a single type of antibody can be isolated and cloned on mass.These antibodies are known as monoclonal antibodies
Different between poly and mono clonal antibodies?
Poly - .Made from a variety of B cellsMono - .Made from only one type of B cell
How do pregnancy tests work?
A hormone called HCG is found in the urine of women only when they are pregnant, pregnancy tests can detect these hormones..Monoclonal antibodies that attach to HCG can be mass produced and stuck down to a test strip on a pregnancy test, while on a separate part of the pregnancy test antibodies attached to blue heads can be placed..If your pregnant and wee on it, the HCG in your urine will attach to the antibodies on the blue heads and the urine will carry them down to the test strip where they will attach to the stuck down antibodies and change the colour of the strip – showing a positive result..If you are not pregnant and wee on it, the urine still carries the blue beads and antibodies down the test to the test strip but they won’t attach to the stuck down antibodies, and so a colour change does not occur – a negative result.
How do monoclonal antibodies help diagnose PSA?
.men with prostate cancer tend to have high levels of the protein PSA (prostate specific antigen) in their blood due to the fact they produce so much of it. Through the use of a monoclonal antibody that can interact with it, it is possible to get a measure of the level of PSA in a sample of blood.
Name 3 ethical implications of monoclonal antibodies?
.Use of mice.Death of patients with MS.Drug trials are dangerous
How is the use of mice in the production of monoclonal antibodies an ethical issue? Has any help been put in place?
.Production of monoclonal antibodies includes the use of mice.The formation of tumour cells includes the deliberate inducing of cancer in mice.Guidelines have been drawn up to reduce suffering but many people still believe it is unethical
How is the death of people with MS in treatment with monoclonal antibodies an ethical issue? Has any help been put in place?
.Monoclonal antibodies have saved many lives through diagnosis and treatment.But they have also led to the deaths of some people with multiple sclerosis.Informed consent is needed, where people know all the details of treatment including possible death before they consent to it
How are drug trials with monoclonal antibodies an ethical issue? Has any help been put in place?
.March 2006, 6 healthy volunteers underwent a test for a new monoclonal antibody in London.They all suffered from organ failures, as a result of T cells overproducing chemicals that stimulate an immune response or attack body tissues.All 6 survived, but it still raises questions about the ethics of drug trials
What is immunity?
The ability of an organism to resist immunity
What are the two types of immunity?
.Passive.Active
What is passive immunity, with examples
.Antibodies introduced from an outside source.Abs are not produced by the individual so they are broken down.No memory cells.Short livedFor example – .Anti-venom.Immunity acquired by a foetus from the mother
What is active immunity
.Production of abs is stimulated by the individual.Direct contact with the pathogen/antigen.Takes time to develop.Long lasting
What two forms does active immunity come in?
.Natural – met the disease yourself, normal immune response.Artificial – from a vaccine, induced immune response, few symptoms
How can vaccines be administered?
orally or subcutaneously (injection)
What does a vaccination do?
Generate an immune response
What do vaccines contain and what do they lead to?
.Vaccines contain antigens from the pathogens and lead to the formation of memory cells
When launching an effective vaccine programme, what needs to be thought about?
.Few side effects, as people can be easily discouraged.Should be cheap enough to immunise all vulnerable populations.Ability to produce, store and transport vaccine – requires hi-tech equipment, hygienic conditions and refrigeration.Needs to be administered correctly at the appropriate time – trained staff required.Vaccinate the majority of the population – best at one time so that for a period no individual carries the disease (transmission interrupted) – herd immunity
What is herd immunity?
.When a large enough proportion of a population is vaccinated which makes it difficult for the pathogen to spread.The vaccinated population provide a measure of protection for individuals who have not developed immunity
Basically, what is herd immunity?
.Basically it’s harder for unvaccinated people to come into contact with the pathogen
When is herd immunity best carried out?
.Herd immunity is bet achieved when the vaccinations are carried out at one time.This means that for a short period there are few infected individuals.This interrupts its transmission
Why are vaccinations not 100% effective?
.Vaccinations don’t induce immunity in some individuals (immune system defects).Disease develops immediately after vaccination before immunity is established .Pathogens can mutate frequently, rapidly changing their antigens (like with the flu).Each pathogen has many varieties (100 varieties of the common cold).Some pathogens can ‘hide’ in the immune system, they hide in cells or live in the gut where they are difficult to kill (e.g. cholera).Individuals object to vaccinations- Religious, ethical, medical and safety concerns
What ethical problems arise with vaccinations?
.Animals used in development.Side-effects can cause long term hard – risk against benefit.Who should vaccines be tested on?.Is it fair to test on a population where the target disease is common based on the idea they will gain the most benefit is its success – the vaccination is just a bit of a guess.Is it right to make vaccinations compulsory?.Should expensive vaccination programmes continue when the disease is almost vaccinated?
What is HIV?
human immunodeficiency virus
What does HIV cause?
AIDS – Acquired immune deficiency syndrome
What does HIV do?
Cause aids and HIV gradually destroys the sufferer’s immune system
When did AIDS epidemic start?
1980’s
As of 2015, how many people were living with HIV globally?
36.7 million people
How many people died of HIV last year?
1.1 million
Where did HIV come from?
HIV arose as a human infection:.Western central Africa.The virus ‘jumped’ the species barrier transferred from primates to humans.Possibly due to eating or slaughtering chimpanzees
How can HIV infect us?
The virus can enter the body via infected body fluids:.During sexual intercourse.Drug-taking using infected needles.Blood infection wounds.Blood transfusion and blood products.Mother to child across the placenta during pregnancy and via breast milk or birth
Symptoms of HIV
.Fever.Sore throat.Body rash.Tiredness.Joint pain.Muscle pain.Swollen glands (nodes)
Symptoms of AIDS
.Weight loss.Chronic diarrhoea.Night sweats.Skin problems.Recurrent infections.Serious life threatening illness
Name the 7 parts that make up HIV virus?
- Transmembrane glycoprotein2. Attachment glycoprotein3. Lipid envelope4. Reverse transcriptase5. Matrix6. Capsid7. Genetic material (RNA)
What is reverse transciptase?
enzyme that catalyses the production of DNA from RNA
Because HIV can produce DNA from RNA, what group is it apart of?
retroviruses
Because HIV is a virus what cant it do? So what does it do instead?
.As HIV is a virus, it is unable to replicate on its own.It uses its genetic material to instruct the host cell’s biochemical mechanisms to produce the parts needed to make new HIV
How does HIV infect host cells? (8 steps)
- p120 molecules on the HIV bind to CD4 receptor proteins on T helper lymphocytes and macrophages2. The protein capsid fuses with the cell membrane3. HIV RNA + enzymes enter T cell4. HIV reverse transcriptase converts the viruses RNA to DNA5. The new DNA is moved into the helper T cell’s nucleus where it is inserted into the cell’s DNA6. The HIV DNA in the nucleus creates mRNA using the cells enzymes. This mRNA contains the instructions for making new viral proteins and the RNA from new HIV7. The mRNA leaves the nucleus of the host cell through nuclear pores and uses the cell’s protein synthesis mechanisms to make HIV particles8. The HIV particles bud away from the helper T cell with a piece of its CSM surrounding them which forms their lipid envelope
What does HIV specifically target?
helper T cells
How does HIV lead to aids?
HIV leads to AIDs by destroying/interfering with T cells normal functioning
How many helper T cells does a healthy human have?
800-1200 helper T cells per mm^3 of blood
How many helper T cells does an AIDS sufferer have?
less than 200 helper T cells per mm^3 of blood
If someone doesn’t have enough T cells what problems arise?
- B cells cannot be stimulated to produce Ab - Cytotoxic T cells cannot be stimulated
With AIDS/HIV can memory cells be affected? What effect does this have?
Memory cells are also sometimes infected and destroyedThis results in an inadequate immune response leaving the body vulnerable to infections and cancer
What are AIDS sufferers prone to?
AIDS sufferers are therefore prone to infections of the lungs, intestine, brain and eyesDiarrhoea and weight loss are common
What type of illness is HIV, why?
It is a secondary illness, not HIV that causes death
How to produce monoclonal antibodies
.Irradiate mouse to induce formation of tumours.Tumours form inside mouse, the cells are removed.Inject different mouse with non-self antigens.B-cells which produce antibodies against the antigens are removed from the spleen.Mix tumour cells with B cells and add detergent.Detergent causes cells to fuse.Fused cells are separated and cultured.Fused cells have features of tumour and B cells – ‘immortal’ and produce antibodies.Culture cells to form clones.Test each clone to identify which one is producing the required antibody.Culture the selected cells on a large scale
Define huminisation
making the monoclonal antibodies suitable for human use (since they come from mouse tissue)
Uses of monoclonal antibodies
.Separating chemicals from mixtures.Immunoassay (detecting concentrations of macromolecules in solutions).Cancer treatment.Transplant surgery
What can antibodies be used to identify?
Antibodies can be used to identify flu, hepatitis, chlamydia and types of cancer
What is a non-specific response?
immediate and same for all pathogens
What are the two nonspecific responses?
.Physical Barrier (skin).Phagocytosis
What is a specific response?
slower and pathogen specific
What are the two specific responses?
.Cell – mediated response (T-Lymphocytes).Humoral response (B-Lymphocytes)
Where do T cells mature?
.T Lymphocytes mature in the thymus gland
What do T cells respond to?
own cells altered by viruses/cancers (foreign material inside body cells) or transplanted tissues
How can different cells display antigens on their surface?
- Phagocytes that have engulfed and hydrolysed a pathogen present some of the pathogens antigens on their surface2. Body cells invaded by a virus present viral antigens on their surface as a distress signal3. Cancer cells are different from normal cells and present antigens on their surface4. Transplanted cells from the same species have different antigens on their cell surface
What are cells that display foreign antigens known as?
antigen-presenting cells
How do T cells become activated?
The phagocyte places antigens from the pathogen on its own cell-surface membraneReceptors on certain helper T-cells fit exactly onto these antigensThis activates other T cells to divide rapidly by mitosis and form a clone
What do cloned T-cells do?
.Develop into memory cells that allow a fast future response to the same pathogen .Stimulate phagocytes to engulf pathogens via phagocytosis .Stimulate B-cells to divide and secrete their antibody .Activate cytotoxic T cells
What do cytotoxic T cells do?
.Cytotoxic T cells kill abnormal body cells
How do cytotoxic T cells kill abnormal body cells?
.They produce a protein called perforin that makes holes in the cell surface membrane.This makes the cell freely permeable, killing it
What are cytotoxic T cells effective against?
.This action is very effective against viruses as they replicate inside cells
What is the ELISA test?
Enzyme linked immunosorbent assay.It uses antibodies to detect the presence and amount of protein in a sample.Highly sensitive
ELISA test method
.Apply sample to surface.The antigens in the sample will attach to this surface.Wash the surface to remove any antigens that aren’t attached.Add the antibody that is specific to the antigen we are trying to detect.Leave to allow binding.Rinse to remove excess antibody.Add a second antibody that will bind with the first antibody.The second antibody has an enzyme attached to it.Add the substrate to the enzyme (must be colourless).The enzyme acts on the substrate.The substrate is converted into coloured products.The amount of antigen present is relative to the intensity of colour that develops
Define pathogen
Disease causing microbe