nucleic acids Flashcards

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1
Q

Describe the structure of nucleotides

A

pentose sugar
phosphate group
nitrogenous base
joined by phosphodiester bond

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2
Q

Nucleotides form the monomers of what?

A

Nucleic acids, DNA and RNA

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2
Q

Name the pentose sugar in DNA and RNA

A

deoxyribose and ribose

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3
Q

Name for a nucleotide with more than one phosphate group

A

phosphorylated nucleotides

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4
Q

What is a phosphorylated nucleotide?

A

A nucleotide with more than one phosphate group

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5
Q

Give an example of a phosphorylated nucleotide

A

ATP adenosine triphosphate (also adp and amp)

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6
Q

Nucleotides may be components of many _______

A

coenzymes

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7
Q

What does ADP stand for?

A

adenosine diphosphate

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8
Q

What does ATP stand for?

A

adenosine triphosphate

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9
Q

What is ATP?

A

energy rich end product of most energy-releasing biochemical processes, drives energy requiring metabolic processes

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10
Q

What are the functions of nucleotides?

A
  • monomers of nucleic acids
  • can become phosphorylated nucleotides
  • regulate many metabolic pathways
  • components of many enzymes
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11
Q

What is NADP?

A

coenzyme, contains adenine nucleotides, used in photosynthesis

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12
Q

What is NAD?

A

coenzyme containing adenine nucleotides, used in respiration

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13
Q

What is FAD?

A

coenzyme containing adenine nucleotides used in respiration

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14
Q

What is coenzyme A?

A

coenzyme containing adenine nucleotide, used in respiration

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15
Q

What is DNA?

A

genetic material used in development and functioning of all organisms;
macromolecule

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16
Q

Describe the structure of DNA

A

two polynucleotide strands run antiparallel,
forming double helix
strands held together by hydrogen bonds through complementary base pairing between nitrogen bases (adenine, guanine, thymine or cytosine)

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17
Q

What is a polymer made of nucleotides called

A

a polynucleotide

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18
Q

Which nucleotide bases are purines

A

Adenine and Guanine

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19
Q

Which nucleotide bases are pyrimidines?

A

Thymine and Cytosine

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20
Q

What are phosphodiester bonds?

A

covalent bond between pentose sugar and phosphate group in a nucleotide

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21
Q

How are the two DNA strands held together?

A

hydrogen bonds between nitrogenous bases

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22
Q

How many bonds connect adenine and thymine?

A

two

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23
Q

Which bonds connect nitrogenous bases in DNA

A

hydrogen

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24
Q

How many bonds connect cytosine and guanine

A

three

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25
Q

What is the name for shape of DNA molecule?

A

double helix

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26
Q

Why is DNA double helix shaped?

A

for stability

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27
Q

What is the difference between purine and pyrimidines?

A

purines have two rings, pyrimidines have three rings

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28
Q

Describe meaning of 5’ and 3’ and how they describe the sugar phosphate backbone of DNA

A

5’ where phosphate attached to 5th carbon of deoxyribose;
3’ where phosphate attached to 3rd carbon;
two polynucleotide strands run in opposite directions, 5 to 3 and 3 to 5

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29
Q

How is DNA organised in eukaryotic cells?

A

genome stored in the nucleus as chromosomes;
small loop in self-replicating mitochondria and chloroplasts

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30
Q

Describe structure of chromosomes

A

DNA/chromatin wound around histone protein

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31
Q

How does DNA in mitochondria/chloroplasts differ to DNA in the nucleus?

A

nucleus DNA wound around histone proteins, other DNA is not

32
Q

How is DNA organised in prokaryotic cells and viruses?

A

found as loop of ‘naked’ DNA in cytoplasm

33
Q

How and when does DNA replication occur?

A

occurs when cells divide during interphase

34
Q

What type of process is DNA replication?

A

semi-conservative

35
Q

Outline process of DNA replication without naming enzymes

A
  • double helix unwinds
  • hydrogen bonds between complimentary bases break
  • strands used as templates and complimentary base pairing
  • occurs between template strands and free nucleotides
    -adjacent nucleotides joined by phosphodiester bonds formed in condensation reactions
36
Q

Outline process of DNA replication and state enzymes which catalyse each step

A
  • DNA unzips using (DNA helicase) breaking hydrogen bonds between complimentary base pairs
  • strands are used as templates and complimentary base pairing between template strand and free nucleotides
  • adjacent nucleotides are joined by phosphodiester bonds using (DNA Polymerase)
    in 5 to 3 direction
37
Q

How do DNA loops in prokaryotes/mitochondria/chloroplasts replicate?

A

semi-conservatively: bubble sprouts from loop, unwinds and unzips. complementary nucleotides join exposed bases, eventually whole loop copied

38
Q

How are phosphodiester bonds formed during replication?

A

hydrolysis of free phosphorylated bases releases energy and phosphate groups used to form bonds

39
Q

In what directions are free bases bonded to exposed DNA during replication?

A

5’ to 3’

40
Q

How are strands replicated in DNA replication?

A

leading strand continuously, lagging strand in fragments

41
Q

Which enzymes catalyses the joining of fragments of replicated DNA?

A

ligase

42
Q

Which enzyme catalyses unwinding of DNA?

A

gyrase

43
Q

Which enzyme catalyses unzipping of DNA?

A

DNA helicase

44
Q

Which enzyme catalyses the joining of free phosphorylated nucleotide bases to exposed DNA bases?

A

DNA polymerase

45
Q

What is the product of DNA replication?

A

two DNA molecules, each made of one new strand and one old

46
Q

Example of mutation which could occur during DNA replication

A

wrong nucleotide inserted, point mutation

47
Q

How are mutations prevented during DNA replication?

A

enzymes proofread and edit out incorrect nucleotides

48
Q

What are different versions of a gene called?

A

alleles

49
Q

How are alleles formed?

A

by mutation

50
Q

How does RNA differ from DNA?

A
  • sugar ribose instead of deoxyribose
  • uracil replaces thymine
  • single-stranded
  • shorter
  • three forms: mRNA, tRNA, rRNA
51
Q

State three forms of RNA

A

messenger, ribosomal and transfer

52
Q

Four examples of specific protein shape

A
  • enzyme complementary to substrate;
  • antibodies complementary to pathogen antigens;
  • receptors complementary to cell-signalling molecules;
  • channel proteins hydrophilic insides and lipophilic outside, fit specific molecules
53
Q

Three main features of the genetic code

A

universal, degenerate, non-overlapping

54
Q

What does universal mean?

A

same base triplets code for same amino acids in every organism

55
Q

What does degenerate mean?

A

more than one codon can code for the same amino acid

56
Q

What does non-overlapping mean?

A

bases read in threes, no crossover

57
Q

Outline the process of transcription without stating enzymes

A
  • hydrogen bonds between complimentary bases break
  • gene uncoil
  • temporary hydrogen bonding of RNA nucleotides and unpaired DNA bases on ‘template’ (antisense) strand
  • coding strand produced
  • copy that is complimentary to template strand
  • mRNA formed from adjacent nucleotides
  • joined by phosphodiester bonds
  • mRNA moved out of nucleus through a pore
  • attaches to ribosome
  • next translation
58
Q

Outline the process of transcription stating enzymes

A
  • hydrogen bonds between complimentary bases break
  • gene uncoils
  • (RNA polymerase) catalyses temporary hydrogen bonding of RNA nucleotides and unpaired DNA bases on ‘template’ (antisense) strand
    using (DNA helicase)
    coding strand produced
  • copy that is complimentary to template strand
  • mRNA formed from adjacent nucleotides
  • joined by phosphodiester bonds
  • mRNA moved out of nucleus through a pore
  • attaches to ribosome
  • next translation
59
Q

Describe structure of ribosomes

A

two separate subunits made in nucleus, magnesium ions help bind them in cytoplasm, made protein and ribosomal RNA

60
Q

Which ion helps ribosomal subunits bind?

A

magnesium ions

61
Q

Describe the structure of a transfer RNA molecule (3)

A

single stranded, hairpin shape;
one end trio nucleotides recognise and bind to amino acids;
at loop another triplet (anticodon) attaches to codons on the RNA

62
Q

What is a codon?

A

three nucleotide sequence codes for amino acid on mRNA

63
Q

what is an anticodon?

A

on tRNA attaches to corresponding codon on mRNA during translation to create amino acid chain

64
Q

outline the process of translation at a ribosome

A
  • anticodon tRNA molecules bind by temporary hydrogen bonds
  • to complimentary codon on mRNA molecule
  • ribosome moves along mRNA
  • joins 2 amino acids by peptide bonds
  • ATP needed for polypeptide synthesis
  • polypeptide assembles
    mRNA breaks down
  • components recycled
  • new polypeptide is formed by chaperone proteins
  • help fold into tertiary structure
65
Q

How do amino acids join to form a chain?

A

by polypeptide bonds during translation

66
Q

Which proteins help fold amino acid chain?

A

chaperone proteins

67
Q

What happens to mRNA after translation?

A

breaks down and can be recycled

68
Q

How do anticodons bind to codons during translation?

A

by hydrogen bonds

69
Q

Which enzyme catalyses the bonding of RNA bases to exposed DNA bases in transcription

A

RNA polymerase

70
Q

Which enzymes catalyses the joining of fragments of replicated DNA?

A

ligase

71
Q

Which enzyme catalyses unwinding of DNA?

A

gyrase

72
Q

Which enzyme catalyses unzipping of DNA?

A

DNA helicase

73
Q

Which enzyme catalyses the joining of free phosphorylated nucleotide bases to exposed DNA bases?

A

DNA polymerase

74
Q

What is the product of DNA replication?

A

two DNA molecules, each made of one new strand and one old

75
Q

Example of mutation which could occur during DNA replication

A

wrong nucleotide inserted, point mutation

76
Q

How are mutations prevented during DNA replication?

A

enzymes proofread and edit out incorrect nucleotides

77
Q

What are different versions of a gene called?

A

alleles

78
Q

How are alleles formed?

A

by mutation